TCONS_00072706 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00072706
Unique Name	TCONS_00072706
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1819

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_82:476233..487273+

transcript sequence

>TCONS_00072706 ID=TCONS_00072706|Name=TCONS_00072706|organism=Clytia hemisphaerica|type=transcript|length=1819bp
CTCTTCGGTTCTTGATTACTTGCCAAAGGAAGATGTCTTAGAAACTCCTG
ATGAACAGAAACCAGAGACAAGTGCAGATCATTTATTTGCATGGGTCATT
GCTCCAGTGAAAACTGAACAATTTTTCAGTGATGTATGGCAAAGGAAACC
TTTATTCATCAAGAGAAGACAATCGAATTATAATAAAGTGTGGTTCAGTA
CAAAAGAgtttgataatattttgaaaaagCAAAATGTTCAATTCACGAAA
AACTTGGATATAGCTGTATTTCGAAATGGCCAACGAGAAACATTGAATCC
GGACGGAAGAGCGTTTGCACCGATGGTCTGGAGATTTTATAAGGAAGGAT
GTTCTATACGTATGTTAAATCCTGCAACATTCTCGTCCAATGTTTGGCAT
CTGTGTTCAAAACTGCAAGAATATTTTGGATGTCTAGTTGGAGCTAACGT
GTATTTGACACCACCAGCATCACAAGGCTTCGCACCTCACTATGATGATA
TCGAAGCTTTCGTCGTTCAATTAGAAGGCAAAAAGCGATGGAGACTTTAC
TCTCCTAGGGATATCAACGAAACATTGGCAAGACATTCAAGTCAAAATCT
CTCTCCAGACGAGCTTGGAGAACCGATCTTGGACAGAGTTTTGGAAGCAG
GAGACAGTCTATATTTTCCACGTGGGATGATCCATCAAGCCATCACGCAA
GATGATTCACATTCTTTACATTTGACATTGTCTGTTCATCAGAAATGCTG
TTGGAGTGATTACATGGAAAAAttaGTTCCATTGGCACTTCAAGCTGCTA
TAGAGGAAGATATCGATTTCCGAAAAGCTTTACCGATCGGATTTCAAAAC
CATATCGGAATGGCTAATTCAGAAAAGAAAAGTGAGGAACGTAAAAGTTT
CATGAAAACAGCTGAGCAGTTGATGAAGAAATTGGTTTCGTTTGTTTCCA
TCGATGAAGCTGGTGACGAGCTTGCATTGGATCAAATGGAAGAATATCTA
CCTCCATCTCTCAGTGAAGACGAAAAACAGCGATCCGTTTCGGGAACTGG
TGCATTTTGGGACAATAATGACATTAAAATGAAATCGAAAATTACATTGA
AGTCCAGAGTTCGTTTATTGCGACCTGGTATTGTAAGACTGATACCAGAG
GATGAAAACCTACAGATTCACCATACAGTGGGTAATAGTCGACAATACAA
AGAACTTCCATTGAGTGCCACTCAAGTACCATTACAGTACGCTGATATCG
TAGAATACTTCTTGTTGAGTTATCCTGAATATGTTCATGTTAAAGATGCA
CCAATTGATGACGACGAAATCAAGCTTGAACTGGCAGAAAAGCTCTACGA
TCTTGGCTTACTGATGACAGAATAGTGGAGTTGATTAATCCAAAGGTTTT
ATACGCAAggtttttatgcattttttattattttttggaactttttacTA
TAAATAAATATCATATGCATTTCAGTTGCGATAGAAATAGAAATGCTCAT
TCGCTTAGCACTCGATCGGTCGGCTCTTGTGCAAATCAAGTTATGGTGGT
AGATAAATCGTGACGTTGTACTTTGTCATTCATCGTTATCCCATTTATCA
AATAGACTCTGGCTATTTTGATGCACATTTTTATACAAAACTAAATTTTA
GAAGGATAATAGAGGTAAATGTTGTATGAATTATATTTTAATAAACAAAC
GAGAATATATTTATAACATATCATACTTAAATACAAACAACCTCATGTAA
CCTATCCCCCTGCTGTTACGATAAGCCTGATAGACAATACAGCAACTTTT
CAATCATTTtagaacgaac

Run BLAST on NCBI

transcript from alignment at scaffold_82:476233..487273+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00072706 ID=TCONS_00072706|Name=TCONS_00072706|organism=Clytia hemisphaerica|type=transcript|length=11041bp|location=Sequence derived from alignment at scaffold_82:476233..487273+ (Clytia hemisphaerica)
CTCTTCGGTTCTTGATTACTTGCCAAAGGAAGATGTCTTAGAAACTCCTG
ATGAACAGAAACCAGAGACAAGTGCAGATCATTTATTTGCATGGGTCATT
GCTCCAGTGAAAACTGAACAATTTTTCAGGTATCTTCTTTTTGTCTTCTT
TTCAGGTGAATATTTCCACAAATTCGAGAAGGAAacactttcatttttga
aaaacaaatataACGCTAAGATTTACAGTGGAGGTCTTTCAATAATCCTT
TAATGGATGCCAACGACGTCATTTTGTCTTTTCGAATACAATAATCAGAG
AGGAGCTTCtatcaacctcgtccccgtgtatcccaggctttatttacgtt
actgattgacgccagagaataccctggtgctTCCCCCTTTCGaatttctc
aaaacaatacgctTCTTTGTCTAAAATTTTGATTCCCTTTTCAGTGATGT
ATGGCAAAGGAAACCTTTATTCATCAAGAGAAGACAATCGAATTATAATA
AAGTGTGGTTCAGTACAAAAGAgtttgataatattttgaaaaaggtaaAT
CTTTCGAAACAAGTTAGCTTTCTTTAGTAATTGGATCTACTGCCCTTCTT
TTAATAGTTGAATTTATCTTATTTTGTCAGTTTTTCATCTTTTCCAAAAA
TGCCCCTGATTTTTAGCCTTAGCTTGAGAAGTCTTACAAGAGATTTGAGA
TGATTAATTTTTCGTGATTTATTGAATGCTGTCACGTTATGAAAAACGTT
CACTTTTTTTGACGTTGTTATTtgttacatcaatcttcaggtaggtccat
tcagtacgtaatttgttgtttttgatgttattttttctaCAAACCAGCAA
AATGTTCAATTCACGAAAAACTTGGATATAGCTGTATTTCGAAATGGCCA
ACGAGAAACATTGAATCCGGACGGAAGAGCGTTTGCACCGATGGTCTGGA
GATTTTATAAGGTAATATTTCATTCGTCAAGAAAAGCTTTGAAACCTTCT
AGACTTGTgagaaattgaaaacaagagataagtttttattgtctcttttt
tTGGACAAGGCCTGGGCGctttaggcttctgctcatcctctagcgaataG
AGTTTCTTATAGAGTTTCCATATAGGAAGTATATATGTAgaggtctgcga
atcagaccAGGGCACTTGCGACTTCTTTCTTATTTTAGCGATATGTTTAT
GTTTATCTTATTTTAGGAAGGATGTTCTATACGTATGTTAAATCCTGCAA
CATTCTCGTCCAATGTTTGGCATCTGTGTTCAAAACTGCAAGAATATTTT
GGATGTCTAGTTGGAGCTAACGTGTATGTATTTTCCAGAGATATTTTTCT
TCACATCGTTAGAATCTCTATATAATTCATCTGCCAAAGGaaagttttta
tgatttataGTGCCAGTTTATTAATTGTCTATACCCTCTAAAGACAATTA
ATAAACTGGCAATTAATAAACTGGCactataaaatcataaaaactttcCT
TTGGCAGATGAATTGTATATAATTTGTATTCTAAATTCGAAATCTTGGCC
TGTGGATAGCTCCTATGGTCAGAAGCAAAAGCTCAGTATTTATTTATATT
CCTCTTCTTCTCATTCTTAACCCATAGGTATTTGACACCACCAGCATCAC
AAGGCTTCGCACCTCACTATGATGATATCGAAGCTTTCGTCGTTCAATTA
GAAGGCAAAAAGCGATGGAGACTTTACTCTCCTAGGTAAGGGATATTTAT
GCTGttaaaaaaccaaaattttgcaTATTGTCTTGTTTATCGTCCTCAAT
CAACACAGTAAATagtaaaagataaaagaggacGTCAGCTTCgggatttt
tttgatttgattgcaaaaagaacgaataaaacttcttctttttttttttg
gccgaGTTATTCATTAACTTTTAATTTCTATTGTTTCGACCAAGAAACTT
TAATAAAACACTCTTTTATTTAAGTTTCTTGTTTTGACTCTACGGGGAAG
AAACGGGGAGAAAATAAACGAAGGAGAGTAAATTTGTGACGTAAGCATTG
TGTTTCTGTTTTCCCCTCACTCTTTCTTTCAATAATGAATTACATACGAG
ATTGAGggaaagagaaaatatttggatcacagaaattttaactgattttg
ttcgtttgttttgttttgtgcgGTAAATTTTATCGATTCATGCCATTTTG
TCTTGCATACGGATGCAGTAATGCATCAGGTagaaatgtaaaaaataaag
gTTTCTTCAAGATTCCTGATCCAAAGAGATATCACGAACAATGTGCACGT
TGGCTACATAACATGGGGAATTCAAAGTATAATGCTAAAAATTTCGAAGC
TAAAGTACATCATGTTGTATGCAGTgaccattttcaccctgattgTTTCA
AGAGAGATCTAAAGAGAGAACTTTGCCCTGATTACAAGGATACAAGAGCA
AAAAGAGAACTCGTAGACGGAGCAATACCGACTATATTCAAACACCGCAC
TTACGATCAGATTAACATGGATGGTACAAAAATCATGTCAAGACCGCCCA
GTAAAAGAACTTTAAAAATGGAGAGAGCTAATGTAAGACATTCATAAATC
cctaaatttagtttttaaggAGGATAACAAAACTTCTAGCTAGTGATATT
TGTTCACTAAATAGCACAAACTCTTTAACTTCGAATCCTCTTCGTGTCCA
ATAAACTATAATTTCAATTTAAGATATAGTCTTTTAAACGATTTTTTAAG
GTTGTCAAGAAGCTGCTTTTGCAAAATGAACCTCCTAAACCTGGCGGGGA
TACCCAACCGATCGACGATACAGATGAAACAAGTGGAACCATTGTTAATG
AAAACGATTCCTCTGAGATTTTGGATGAAAACACAGGAATAAATATCGAT
ATACGTGTATCAACCACCATCAAAAATAGTATACCGATAAAAAATGAACC
AAGTACTGAACGAAAAACTGTAGAAAAGNGTGTATCAACCACCATCAAAA
ATAGTATCCCGATAAAAAATGAACCAAGTACTGAACGAAAAACTGTAGAA
AAGGAAGTCGTAACCACCCAAATTGCAACCCAAACATATGTTTTGAAAAG
GAAAGAGAAGGGAGAAAATTTAAACCAGAAAGCTTATGAACTTGCCGAAA
GACTAGTTGGTTCCAAAAACATTTCTTTGGCTGATTATCGATTATCAGCT
AATGCCCTTTTAAAACCAGTGTAGTGACCACCAATGGGTTCTGGAAAGGT
GTCTTTTATCTTCTTAACAGCGGATGGAACAACCACTCTTATTTAAGAAA
TATATCTaccttttttgtaattttattcagctttttgaaaattttcttct
gTCTCCTCTTCACAATCAATGTTATTTCAAGAGCGCAAGGGCTCGAGAtt
aaatctttgaagccttcatGTTCAGTGATGCATTTTATCCTTTGAAGTTT
TTCCGCAGCTAATATACCACATACTTTTCTAATGTTAAGTCCTAACGTAT
TGTCCATTCCTATTCGACACTTGCACCATTCCAAATTTTCCAATCTACTG
GATTCTAGATCATCATTGCTTCTGTCACTAGAAGAACTATCACTagacaa
aatcttttgaaattcttCCTTGGAATATTCCGGCTCGTCACCATATCATC
CACCAATTTCTTCGTCAGATTCTATGTATGACGTGCTGGTTGACGAAGTA
TCACTTGATTCATCACGCATCTTTCTCGTacttaggctacgtcatatctt
cctccgtttcgagcgtaaaactcctactcttcgagTAAGAgtaaccttaa
ctttgctctgagccttatttttacagagcatttcagcctcaaagttcctt
atggagttccttatttacatactAGTAGCTGCTAAAtttggattcgcaaa
aattagattccttaaaacttttttccttattctcagcctgggcagttcct
taacaattccttattttttggaccattttcagcctcgagttccttataaa
cgtgttccttaaaaaaacgtgcattgTGTAGTACTGCGTTCTTTTTCGAT
TCCAATGTTTGTAATATTTGTGAAAAAAACTGTCTCTCTTTTTACCGAAA
ATGTTACCACATTTGTTATGTCACATATTTAGAaagatggaaaatatttt
caaatgtcTATTATTGcgcattgagaaaaaaacttcCAAAACATATAcca
taaatttttaaaaattgaaataaaatatatgGTACAAATTTGGGCTGACG
TCCTCTTTAATAGCACTTGTGGAAAACCGACACatttttcatcattagtt
tCACAAGAATCTTAAATTGCACTGAAAGAGACTGAGtcaattttaaatga
aaaagaaattcccaAATGAGTTGCTTTCTCTAGATTTCATTATTACGTTT
TCAACATCGGTGATCTTTTTCTACTTTTAGGGATATCAACGAAACATTGG
CAAGACATTCAAGTCGTAAGTATTGACTTCCATTTTTGTAAATAATCATT
TTCCCGACATATGTAGAGATCTGTGCGTGTATAGGGGTTTCAAAAGAACT
TCTTTTATTGTAGTGCTGTCTTCTTTCAGAAAATCTCTCTCCAGACGAGC
TTGGAGAACCGATCTTGGACAGAGTTTTGGAAGCAGGAGACAGTCTATAT
TTTCCACGTGGGATGATCCATCAAGCCATCACGCAAGATGATTCACATTC
TTTACATTTGACATTGTCTGTTCATCAGAAATGCTGTTGGAGTGATTACA
TGGAAAAAGTATGATTTTCTCTAGTGTCACTTCATATTACAGTACAATCT
TTTTATCTGGACCCTATACCTTGAAATGATCTTGGTCCGTAGGGTAATTT
TTAAAGTcttatttcatttcattttcattttagttaGTTCCATTGGCACT
TCAAGCTGCTATAGAGGAAGATATCGATTTCCGAAAAGCTTTACCGATCG
GATTTCAAAACCATATCGGAATGGCTAATTCAGAAAAGGTAATAGGTGTT
TCTtcagtctacacaatagacagctccaggcttttaggccttactcttgg
tctataggcactgctatatgCGGCCACTAGTAACCCCCACCGGAAATTGC
TTTactaataggtttaaacatattagacaactttcacaaaagatgtttat
taaAACACAGATGATTGGCTTAGGCTTCGAGACTCTCTATTgattcatta
aaacctcagtgcgcatgcgatttatccggagaatttcaatattcaaaacg
agagcagtgctcatatcccgaagcGTAGGatttttacgctcgaaacgaag
gaaggtATATTAAGTAGCCTAGTGCTTCTAACGTTGACTGTATTCATAAA
AGCAACACTTAAAAAAGATCAAGGGATGNTCCCAGAGGAGTTCATAAGAA
ATTGACTGTATTCATAAAAGCAACACTTAAAAAAGATCTAGGGATtcaat
caccttggtaatggtttcaaaacgagatAGTCGTTGCAATCagaataatt
tatgaaaatgccTGTTATGCGTAAAAATGAAAGGATTCGAGTTGACATCC
ATTTAGTAGAATTCCCTCACCTATACCAGTATAACAACTCCTTAGGATTC
ACCTTCCTACCTACCGTTTACTTTCTCTTCTATTTCATAATCCTAGAAAA
GTGAGGAACGTAAAAGTTTCATGAAAACAGCTGAGCAGTTGATGAAGAAA
TTGGTTTCGTTTGTTTCCATCGATGAAGCTGGTGACGAGGTTAGTATGTT
CATTTGAATCGGATCTTTTTAAAGGATTCTCTCTTAACGTAAATATGTAA
GTCTGCGactgcagtcggaggcgacctgaaggctcctcttttgatagcta
tctacccgaagttaggggagggcgccactctttttccctagattgctcca
cttacccttgatcattctcttggtatgacccggctaggGGTTGAACCCGC
AACCAATGCAAGGTCTTAACCATAAATATGGCCGTAAATTTAGTTGAACG
GGTTGAATTTTCCTAAAATCTGATTTGGTACATTATTTCCTTTCTTCTGC
TTAATTAACTTTTGATGTTTGAGATGTGAAAATAGACTTTATCCAGCTTT
ATCGTGTATTTTAATCGtaaaaattttagcgagactaattttagcgaatt
ttccttattttcgctaaaataaatctcgctaaaacacgccgaatcgacag
aacgctaaaatttatccacgcgaaatttctggttatattgccttgattca
tttttatcaatgagaagggtttcagtgcaaagaaatgctagaaaacgaat
tcagtcaataaaatgtaatacgagtattcgctaaaatttatccacgcgaa
attttttgaaatcgtgattcgctaaaataaatccaaaaaaaatcgagatt
tttctggctcgctaatatacgctaaaattagtctcgctaaaatttctacg
attaaagtaactCGGATGCAATTACTTACTATTTGACAAACGAGATTAAT
TCTCCCTTTGTTTTTTAGCTTGCATTGGATCAAATGGAAGAATATCTACC
TCCATCTCTCAGTGAAGGTATGGACAAGAGTTTGTTTTTCATACCAATAG
AAAGAAGTTGATTCATTCTCAACCCGGCCCAATCATATCTAACCACGTTT
CTCATATACTATGTTGTTTCTATTAAATAAGTTCACTTTTTTGCCTGTTT
ATTTTTAGACGAAAAACAGCGATCCGTTTCGGGAACTGGTGCATTTTGGG
ACAATAATGACATTAAAATGAAATCGAAAATTACATTGAAGTCCAGAGTT
CGTTTATTGCGACCTGGTATTGTAAGGTCAGCATCCCCTTCCATTGTTCA
TTGCATTGTTGACTACGCTTCAAAATGAATGGCTGATTGGTctaatcata
gtataagaaagccgcggctggaatatgtaccgtaTTGTCTTTTTCCGTAT
TGTCTTTTgcctgtctccgagctttataagaacattaagatgctcagttt
attattggtagaaagtttttgaatttttcctctTATTtcccttcacaaaa
agttttttaaatgcTAAATATCCTTGAATCTGTActcaatagaacacttg
aattaatttggacatattttaggggtattttgtggaaaaaatagtttttc
gccaaaattgaaattataagaaccatattcaagatgacaactttcttgTC
AGTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTagatttcttattgttgatcttt
cctttacaatgattttataatgcaagtgtattatcaagggtatatcatta
atgtctaaaacacactgagaagtaagtTTTAACGACAAACCagtaaaatt
taccattaaagatacTACATTACTGATCTCTTGATCaaaaaatagtcatc
aaatacgacagagatagaacaacagaagttcagatgttatcattccagcc
gcggctttcttatactatggtctAATTTTATCTATTAGTATGATTTTAAC
TATAGTGGAATCTTTATTCTACATTCCTATCGAAAGGGAACTGAAATCTT
TGCCTGGATACAGTAGCTTcaagataaaaaagagaaaattaaaagatttg
gTTTTTGGGTAAAACTTATGCATCCTTAGTACTTATTGTAGTTTTTCTCA
ATTACAGACTGATACCAGAGGATGAAAACCTACAGATTCACCATACAGTG
GGTAATAGTCGACAATACAAAGAACTTCCATTGAGTGCCACTCAAGTACC
ATTACAGGTAACTTCTTCTTCATTGTTCTTTGGGTTTAGTAAGAACTACC
TTAGGGGAAGaagttttggcgggaatttaatttggtggatggcttgaaaa
attagatttggcggatgaaggacatttttcttacaaaaaaacgcaattaa
attagaaaaaaaaacctgttttaaaagCCTGAAATGgaatagcacacatt
tgggtGAATAAATACAGTAATTTAAATTTGACTGGaaattaatttggcgg
attttgatCAAATCCACCAAAGCCGCCGAATTTACTTtccaacaaaattt
cttcccaagGTAAACACAAGTAAACCAAACTGAACGattgtttcaaataa
aatagTCCAGAGTAACTTTTTTTTCCATCTAAAAAAGAAaggcttatttt
ttttaaactcttCTTCGGAGACCTCAGCTCTTTAACAAAATGAAGGTCAA
GAGctttacttttttcaattttcactgtCCTGAAGTTATTATTACCGAGT
TTTTGTATTGGAGGATATCGAGGgtgacggtaagtgaaatcgatacaaaa
taGAGTCGATAGTTCATGTACAGCTCACCTAAaaagacgacggtattttg
gtatttttaccgtcgtcgagcaaagtttGCGTTATATTgtcccctcgatt
tatctcgaatccTTAAACTTGCTATTGAAGAGGGTCCTGACgatcttttc
atttttgtttcctTTAGTACGCTGATATCGTAGAATACTTCTTGTTGAGT
TATCCTGAATATGTTCATGTTAAAGATGCACCAATTGATGACGACGAAAT
CAAGGTTCCATTGacaattttttggacctacctccgggtaccccggtgga
ggttctataaattaacccatgtccgtccgttcgttcgttcgttcgtccgt
ccgtccgtccgtctgttaccagcttttctcaggattggctcattagtttt
ttctgattttttgcacaatgatgcaaaatggcaatgcccagaacgtgacg
gagcccgatttttgagaaaaaatttatttgggcaaatttgggccaaaaac
tacctaaaaatagggttttttcgactttgtgcaaaatcctgtcatttctt
ttttctgattttttgtacaaagatggagggcaagattctctaaagaatgg
ctgaagtggtttttcccggaaaattcttattcgccttaaaaaacggattt
tcgtattttggggaaattccctttaaccaaataagaaaatatagcttttc
tcaatattgactcataattttcttctgattttttgcacaatgatgcaaaa
tgacaatgcccaaaatgtgacggagctagatttttaaggaaaatatattt
gggcaaatttgtgccaaaaacagcttaaaaggtatTTTGgacctgaatgg
tttaagtgattttcgtatttggggaaattcctttttaccattttacatta
ttcaacacacaagctttNatttttaccattttacattattcaacacacaa
gctttattttccattctgaatttttgtacaattattgtcacttttttctt
attttcatctgatgttaatcattaggtaggtccattcagcatgttgcttg
tttatccTTATGTTTTAATCGTTGATCATATGCATTTATTGCTGAAGTGA
AAGCCCGGTTGACAGCTTCCACCCTGAAGTTAACACGTTCACCATAGATA
CCTTCTCAAAAATTGTAAGAATTGACTCCtttgaaatttcattgaaaGTT
TAACTTTCAGAGTGGCTCATATGGTCTTCCCAACCCTGAACCCAAAGTCT
CATGATAAAAACCAAatcttttgatgtaatttctttttCGTTACAGCTTG
AACTGGCAGAAAAGCTCTACGATCTTGGCTTACTGATGACAGAATAGTGG
AGTTGATTAATCCAAAGGTTTTATACGCAAggtttttatgcattttttat
tattttttggaactttttacTATAAATAAATATCATATGCATTTCAGTTG
CGATAGAAATAGAAATGCTCATTCGCTTAGCACTCGATCGGTCGGCTCTT
GTGCAAATCAAGTTATGGTGGTAGATAAATCGTGACGTTGTACTTTGTCA
TTCATCGTTATCCCATTTATCAAATAGACTCTGGCTATTTTGATGCACAT
TTTTATACAAAACTAAATTTTAGAAGGATAATAGAGGTAAATGTTGTATG
AATTATATTTTAATAAACAAACGAGAATATATTTATAACATATCATACTT
AAATACAAACAACCTCATGTAACCTATCCCCCTGCTGTTACGATAAGCCT
GATAGACAATACAGCAACTTTTCAATCATTTtagaacgaac

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_045129	XLOC_045129	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_82	supercontig	scaffold_82:476233..487273 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	2.85545	2.83035	0.925387	1.28228	0.689913	0.577352	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00072706 vs. Swiss-Prot (Human)
Match: RIOX1 (Ribosomal oxygenase 1 OS=Homo sapiens GN=RIOX1 PE=1 SV=2)

HSP 1 Score: 417.542 bits (1072), Expect = 5.318e-137
Identity = 201/434 (46.31%), Postives = 285/434 (65.67%), Query Frame = 2

Query:   74 ADHLFAWVIAPVKTEQFFSDVWQRKPLFIKRRQSNYNKVWFSTKEFDNILKKQNVQFTKNLDIAVFRNGQRETLNPDGRAFAPMVWRFYKEGCSIRMLNPATFSSNVWHLCSKLQEYFGCLVGANVYLTPPASQGFAPHYDDIEAFVVQLEGKKRWRLYSPRDINETLARHSSQNLSPDELGEPILDRVLEAGDSLYFPRGMIHQAITQDDSHSLHLTLSVHQKCCWSDYMEKLVPLALQAAIEEDIDFRKALPIGFQNHIGMANSEKKSEERKSFMKTAEQLMKKLVSFVSIDEAGDELALDQMEEYLPPSLSEDEKQRSVSGTGAFWDNND-IKMKSKITLKSRVRLLRPGIVRLIPEDENLQIHHTVGNSRQYKELPLSATQVPLQYADIVEYFLLSYPEYVHVKDAPIDDDEIKLELAEKLYDLGLLMTE 1372
            A  LF W+IAP+  + F+  +W+R+ + ++R+   Y +  FST + D++L+ + VQF ++LD A + NG+RETLNP GRA     W  Y+ GCS+R+L P  FS+ VW   + LQE FG + G+NVYLTPP SQGFAPHYDDIEAFV+QLEG+K WR+Y PR   E LA  SS N S D+LGEP+L  VLE GD LYFPRG IHQA  QD  HSLHLTLS +Q+  W D++E ++PLA+QAA+EE+++FR+ LP  F +++G  +S+ K   R +FM+    L+ +L  F  +D   D+ A D + + LPP L++ E+  SV G    W+  + + + +++T ++ V +L+ GI RL+ E  +L +++TV NSR Y        ++  Q AD +E  L SYPE+V V D P D  E +L LA  LYD GLL+T+
Sbjct:  202 AARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDHTYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALPAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRVPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERALSVYGLPIRWEAGEPVNVGAQLTTETEVHMLQDGIARLVGEGGHLFLYYTVENSRVYHLEEPKCLEIYPQQADAMELLLGSYPEFVRVGDLPCDSVEDQLSLATTLYDKGLLLTK 635

The following BLAST results are available for this feature:

BLAST of TCONS_00072706 vs. Swiss-Prot (Human)

BLAST of TCONS_00072706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RIOX1	5.318e-137	46.31	Ribosomal oxygenase 1 OS=Homo sapiens GN=RIOX1 PE=...	[more]

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TCONS_00072706 (transcript) - C. hemisphaerica