TCONS_00072706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072706
Unique NameTCONS_00072706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072706 ID=TCONS_00072706|Name=TCONS_00072706|organism=Clytia hemisphaerica|type=transcript|length=1819bp
CTCTTCGGTTCTTGATTACTTGCCAAAGGAAGATGTCTTAGAAACTCCTG
ATGAACAGAAACCAGAGACAAGTGCAGATCATTTATTTGCATGGGTCATT
GCTCCAGTGAAAACTGAACAATTTTTCAGTGATGTATGGCAAAGGAAACC
TTTATTCATCAAGAGAAGACAATCGAATTATAATAAAGTGTGGTTCAGTA
CAAAAGAgtttgataatattttgaaaaagCAAAATGTTCAATTCACGAAA
AACTTGGATATAGCTGTATTTCGAAATGGCCAACGAGAAACATTGAATCC
GGACGGAAGAGCGTTTGCACCGATGGTCTGGAGATTTTATAAGGAAGGAT
GTTCTATACGTATGTTAAATCCTGCAACATTCTCGTCCAATGTTTGGCAT
CTGTGTTCAAAACTGCAAGAATATTTTGGATGTCTAGTTGGAGCTAACGT
GTATTTGACACCACCAGCATCACAAGGCTTCGCACCTCACTATGATGATA
TCGAAGCTTTCGTCGTTCAATTAGAAGGCAAAAAGCGATGGAGACTTTAC
TCTCCTAGGGATATCAACGAAACATTGGCAAGACATTCAAGTCAAAATCT
CTCTCCAGACGAGCTTGGAGAACCGATCTTGGACAGAGTTTTGGAAGCAG
GAGACAGTCTATATTTTCCACGTGGGATGATCCATCAAGCCATCACGCAA
GATGATTCACATTCTTTACATTTGACATTGTCTGTTCATCAGAAATGCTG
TTGGAGTGATTACATGGAAAAAttaGTTCCATTGGCACTTCAAGCTGCTA
TAGAGGAAGATATCGATTTCCGAAAAGCTTTACCGATCGGATTTCAAAAC
CATATCGGAATGGCTAATTCAGAAAAGAAAAGTGAGGAACGTAAAAGTTT
CATGAAAACAGCTGAGCAGTTGATGAAGAAATTGGTTTCGTTTGTTTCCA
TCGATGAAGCTGGTGACGAGCTTGCATTGGATCAAATGGAAGAATATCTA
CCTCCATCTCTCAGTGAAGACGAAAAACAGCGATCCGTTTCGGGAACTGG
TGCATTTTGGGACAATAATGACATTAAAATGAAATCGAAAATTACATTGA
AGTCCAGAGTTCGTTTATTGCGACCTGGTATTGTAAGACTGATACCAGAG
GATGAAAACCTACAGATTCACCATACAGTGGGTAATAGTCGACAATACAA
AGAACTTCCATTGAGTGCCACTCAAGTACCATTACAGTACGCTGATATCG
TAGAATACTTCTTGTTGAGTTATCCTGAATATGTTCATGTTAAAGATGCA
CCAATTGATGACGACGAAATCAAGCTTGAACTGGCAGAAAAGCTCTACGA
TCTTGGCTTACTGATGACAGAATAGTGGAGTTGATTAATCCAAAGGTTTT
ATACGCAAggtttttatgcattttttattattttttggaactttttacTA
TAAATAAATATCATATGCATTTCAGTTGCGATAGAAATAGAAATGCTCAT
TCGCTTAGCACTCGATCGGTCGGCTCTTGTGCAAATCAAGTTATGGTGGT
AGATAAATCGTGACGTTGTACTTTGTCATTCATCGTTATCCCATTTATCA
AATAGACTCTGGCTATTTTGATGCACATTTTTATACAAAACTAAATTTTA
GAAGGATAATAGAGGTAAATGTTGTATGAATTATATTTTAATAAACAAAC
GAGAATATATTTATAACATATCATACTTAAATACAAACAACCTCATGTAA
CCTATCCCCCTGCTGTTACGATAAGCCTGATAGACAATACAGCAACTTTT
CAATCATTTtagaacgaac
Run BLAST on NCBI

transcript from alignment at scaffold_82:476233..487273+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072706 ID=TCONS_00072706|Name=TCONS_00072706|organism=Clytia hemisphaerica|type=transcript|length=11041bp|location=Sequence derived from alignment at scaffold_82:476233..487273+ (Clytia hemisphaerica)
CTCTTCGGTTCTTGATTACTTGCCAAAGGAAGATGTCTTAGAAACTCCTG ATGAACAGAAACCAGAGACAAGTGCAGATCATTTATTTGCATGGGTCATT GCTCCAGTGAAAACTGAACAATTTTTCAGGTATCTTCTTTTTGTCTTCTT TTCAGGTGAATATTTCCACAAATTCGAGAAGGAAacactttcatttttga aaaacaaatataACGCTAAGATTTACAGTGGAGGTCTTTCAATAATCCTT TAATGGATGCCAACGACGTCATTTTGTCTTTTCGAATACAATAATCAGAG AGGAGCTTCtatcaacctcgtccccgtgtatcccaggctttatttacgtt actgattgacgccagagaataccctggtgctTCCCCCTTTCGaatttctc aaaacaatacgctTCTTTGTCTAAAATTTTGATTCCCTTTTCAGTGATGT ATGGCAAAGGAAACCTTTATTCATCAAGAGAAGACAATCGAATTATAATA AAGTGTGGTTCAGTACAAAAGAgtttgataatattttgaaaaaggtaaAT CTTTCGAAACAAGTTAGCTTTCTTTAGTAATTGGATCTACTGCCCTTCTT TTAATAGTTGAATTTATCTTATTTTGTCAGTTTTTCATCTTTTCCAAAAA TGCCCCTGATTTTTAGCCTTAGCTTGAGAAGTCTTACAAGAGATTTGAGA TGATTAATTTTTCGTGATTTATTGAATGCTGTCACGTTATGAAAAACGTT CACTTTTTTTGACGTTGTTATTtgttacatcaatcttcaggtaggtccat tcagtacgtaatttgttgtttttgatgttattttttctaCAAACCAGCAA AATGTTCAATTCACGAAAAACTTGGATATAGCTGTATTTCGAAATGGCCA ACGAGAAACATTGAATCCGGACGGAAGAGCGTTTGCACCGATGGTCTGGA GATTTTATAAGGTAATATTTCATTCGTCAAGAAAAGCTTTGAAACCTTCT AGACTTGTgagaaattgaaaacaagagataagtttttattgtctcttttt tTGGACAAGGCCTGGGCGctttaggcttctgctcatcctctagcgaataG AGTTTCTTATAGAGTTTCCATATAGGAAGTATATATGTAgaggtctgcga atcagaccAGGGCACTTGCGACTTCTTTCTTATTTTAGCGATATGTTTAT GTTTATCTTATTTTAGGAAGGATGTTCTATACGTATGTTAAATCCTGCAA CATTCTCGTCCAATGTTTGGCATCTGTGTTCAAAACTGCAAGAATATTTT GGATGTCTAGTTGGAGCTAACGTGTATGTATTTTCCAGAGATATTTTTCT TCACATCGTTAGAATCTCTATATAATTCATCTGCCAAAGGaaagttttta tgatttataGTGCCAGTTTATTAATTGTCTATACCCTCTAAAGACAATTA ATAAACTGGCAATTAATAAACTGGCactataaaatcataaaaactttcCT TTGGCAGATGAATTGTATATAATTTGTATTCTAAATTCGAAATCTTGGCC TGTGGATAGCTCCTATGGTCAGAAGCAAAAGCTCAGTATTTATTTATATT CCTCTTCTTCTCATTCTTAACCCATAGGTATTTGACACCACCAGCATCAC AAGGCTTCGCACCTCACTATGATGATATCGAAGCTTTCGTCGTTCAATTA GAAGGCAAAAAGCGATGGAGACTTTACTCTCCTAGGTAAGGGATATTTAT GCTGttaaaaaaccaaaattttgcaTATTGTCTTGTTTATCGTCCTCAAT CAACACAGTAAATagtaaaagataaaagaggacGTCAGCTTCgggatttt tttgatttgattgcaaaaagaacgaataaaacttcttctttttttttttg gccgaGTTATTCATTAACTTTTAATTTCTATTGTTTCGACCAAGAAACTT TAATAAAACACTCTTTTATTTAAGTTTCTTGTTTTGACTCTACGGGGAAG AAACGGGGAGAAAATAAACGAAGGAGAGTAAATTTGTGACGTAAGCATTG TGTTTCTGTTTTCCCCTCACTCTTTCTTTCAATAATGAATTACATACGAG ATTGAGggaaagagaaaatatttggatcacagaaattttaactgattttg ttcgtttgttttgttttgtgcgGTAAATTTTATCGATTCATGCCATTTTG TCTTGCATACGGATGCAGTAATGCATCAGGTagaaatgtaaaaaataaag gTTTCTTCAAGATTCCTGATCCAAAGAGATATCACGAACAATGTGCACGT TGGCTACATAACATGGGGAATTCAAAGTATAATGCTAAAAATTTCGAAGC TAAAGTACATCATGTTGTATGCAGTgaccattttcaccctgattgTTTCA AGAGAGATCTAAAGAGAGAACTTTGCCCTGATTACAAGGATACAAGAGCA AAAAGAGAACTCGTAGACGGAGCAATACCGACTATATTCAAACACCGCAC TTACGATCAGATTAACATGGATGGTACAAAAATCATGTCAAGACCGCCCA GTAAAAGAACTTTAAAAATGGAGAGAGCTAATGTAAGACATTCATAAATC cctaaatttagtttttaaggAGGATAACAAAACTTCTAGCTAGTGATATT TGTTCACTAAATAGCACAAACTCTTTAACTTCGAATCCTCTTCGTGTCCA ATAAACTATAATTTCAATTTAAGATATAGTCTTTTAAACGATTTTTTAAG GTTGTCAAGAAGCTGCTTTTGCAAAATGAACCTCCTAAACCTGGCGGGGA TACCCAACCGATCGACGATACAGATGAAACAAGTGGAACCATTGTTAATG AAAACGATTCCTCTGAGATTTTGGATGAAAACACAGGAATAAATATCGAT ATACGTGTATCAACCACCATCAAAAATAGTATACCGATAAAAAATGAACC AAGTACTGAACGAAAAACTGTAGAAAAGNGTGTATCAACCACCATCAAAA ATAGTATCCCGATAAAAAATGAACCAAGTACTGAACGAAAAACTGTAGAA AAGGAAGTCGTAACCACCCAAATTGCAACCCAAACATATGTTTTGAAAAG GAAAGAGAAGGGAGAAAATTTAAACCAGAAAGCTTATGAACTTGCCGAAA GACTAGTTGGTTCCAAAAACATTTCTTTGGCTGATTATCGATTATCAGCT AATGCCCTTTTAAAACCAGTGTAGTGACCACCAATGGGTTCTGGAAAGGT GTCTTTTATCTTCTTAACAGCGGATGGAACAACCACTCTTATTTAAGAAA TATATCTaccttttttgtaattttattcagctttttgaaaattttcttct gTCTCCTCTTCACAATCAATGTTATTTCAAGAGCGCAAGGGCTCGAGAtt aaatctttgaagccttcatGTTCAGTGATGCATTTTATCCTTTGAAGTTT TTCCGCAGCTAATATACCACATACTTTTCTAATGTTAAGTCCTAACGTAT TGTCCATTCCTATTCGACACTTGCACCATTCCAAATTTTCCAATCTACTG GATTCTAGATCATCATTGCTTCTGTCACTAGAAGAACTATCACTagacaa aatcttttgaaattcttCCTTGGAATATTCCGGCTCGTCACCATATCATC CACCAATTTCTTCGTCAGATTCTATGTATGACGTGCTGGTTGACGAAGTA TCACTTGATTCATCACGCATCTTTCTCGTacttaggctacgtcatatctt cctccgtttcgagcgtaaaactcctactcttcgagTAAGAgtaaccttaa ctttgctctgagccttatttttacagagcatttcagcctcaaagttcctt atggagttccttatttacatactAGTAGCTGCTAAAtttggattcgcaaa aattagattccttaaaacttttttccttattctcagcctgggcagttcct taacaattccttattttttggaccattttcagcctcgagttccttataaa cgtgttccttaaaaaaacgtgcattgTGTAGTACTGCGTTCTTTTTCGAT TCCAATGTTTGTAATATTTGTGAAAAAAACTGTCTCTCTTTTTACCGAAA ATGTTACCACATTTGTTATGTCACATATTTAGAaagatggaaaatatttt caaatgtcTATTATTGcgcattgagaaaaaaacttcCAAAACATATAcca taaatttttaaaaattgaaataaaatatatgGTACAAATTTGGGCTGACG TCCTCTTTAATAGCACTTGTGGAAAACCGACACatttttcatcattagtt tCACAAGAATCTTAAATTGCACTGAAAGAGACTGAGtcaattttaaatga aaaagaaattcccaAATGAGTTGCTTTCTCTAGATTTCATTATTACGTTT TCAACATCGGTGATCTTTTTCTACTTTTAGGGATATCAACGAAACATTGG CAAGACATTCAAGTCGTAAGTATTGACTTCCATTTTTGTAAATAATCATT TTCCCGACATATGTAGAGATCTGTGCGTGTATAGGGGTTTCAAAAGAACT TCTTTTATTGTAGTGCTGTCTTCTTTCAGAAAATCTCTCTCCAGACGAGC TTGGAGAACCGATCTTGGACAGAGTTTTGGAAGCAGGAGACAGTCTATAT TTTCCACGTGGGATGATCCATCAAGCCATCACGCAAGATGATTCACATTC TTTACATTTGACATTGTCTGTTCATCAGAAATGCTGTTGGAGTGATTACA TGGAAAAAGTATGATTTTCTCTAGTGTCACTTCATATTACAGTACAATCT TTTTATCTGGACCCTATACCTTGAAATGATCTTGGTCCGTAGGGTAATTT TTAAAGTcttatttcatttcattttcattttagttaGTTCCATTGGCACT TCAAGCTGCTATAGAGGAAGATATCGATTTCCGAAAAGCTTTACCGATCG GATTTCAAAACCATATCGGAATGGCTAATTCAGAAAAGGTAATAGGTGTT TCTtcagtctacacaatagacagctccaggcttttaggccttactcttgg tctataggcactgctatatgCGGCCACTAGTAACCCCCACCGGAAATTGC TTTactaataggtttaaacatattagacaactttcacaaaagatgtttat taaAACACAGATGATTGGCTTAGGCTTCGAGACTCTCTATTgattcatta aaacctcagtgcgcatgcgatttatccggagaatttcaatattcaaaacg agagcagtgctcatatcccgaagcGTAGGatttttacgctcgaaacgaag gaaggtATATTAAGTAGCCTAGTGCTTCTAACGTTGACTGTATTCATAAA AGCAACACTTAAAAAAGATCAAGGGATGNTCCCAGAGGAGTTCATAAGAA ATTGACTGTATTCATAAAAGCAACACTTAAAAAAGATCTAGGGATtcaat caccttggtaatggtttcaaaacgagatAGTCGTTGCAATCagaataatt tatgaaaatgccTGTTATGCGTAAAAATGAAAGGATTCGAGTTGACATCC ATTTAGTAGAATTCCCTCACCTATACCAGTATAACAACTCCTTAGGATTC ACCTTCCTACCTACCGTTTACTTTCTCTTCTATTTCATAATCCTAGAAAA GTGAGGAACGTAAAAGTTTCATGAAAACAGCTGAGCAGTTGATGAAGAAA TTGGTTTCGTTTGTTTCCATCGATGAAGCTGGTGACGAGGTTAGTATGTT CATTTGAATCGGATCTTTTTAAAGGATTCTCTCTTAACGTAAATATGTAA GTCTGCGactgcagtcggaggcgacctgaaggctcctcttttgatagcta tctacccgaagttaggggagggcgccactctttttccctagattgctcca cttacccttgatcattctcttggtatgacccggctaggGGTTGAACCCGC AACCAATGCAAGGTCTTAACCATAAATATGGCCGTAAATTTAGTTGAACG GGTTGAATTTTCCTAAAATCTGATTTGGTACATTATTTCCTTTCTTCTGC TTAATTAACTTTTGATGTTTGAGATGTGAAAATAGACTTTATCCAGCTTT ATCGTGTATTTTAATCGtaaaaattttagcgagactaattttagcgaatt ttccttattttcgctaaaataaatctcgctaaaacacgccgaatcgacag aacgctaaaatttatccacgcgaaatttctggttatattgccttgattca tttttatcaatgagaagggtttcagtgcaaagaaatgctagaaaacgaat tcagtcaataaaatgtaatacgagtattcgctaaaatttatccacgcgaa attttttgaaatcgtgattcgctaaaataaatccaaaaaaaatcgagatt tttctggctcgctaatatacgctaaaattagtctcgctaaaatttctacg attaaagtaactCGGATGCAATTACTTACTATTTGACAAACGAGATTAAT TCTCCCTTTGTTTTTTAGCTTGCATTGGATCAAATGGAAGAATATCTACC TCCATCTCTCAGTGAAGGTATGGACAAGAGTTTGTTTTTCATACCAATAG AAAGAAGTTGATTCATTCTCAACCCGGCCCAATCATATCTAACCACGTTT CTCATATACTATGTTGTTTCTATTAAATAAGTTCACTTTTTTGCCTGTTT ATTTTTAGACGAAAAACAGCGATCCGTTTCGGGAACTGGTGCATTTTGGG ACAATAATGACATTAAAATGAAATCGAAAATTACATTGAAGTCCAGAGTT CGTTTATTGCGACCTGGTATTGTAAGGTCAGCATCCCCTTCCATTGTTCA TTGCATTGTTGACTACGCTTCAAAATGAATGGCTGATTGGTctaatcata gtataagaaagccgcggctggaatatgtaccgtaTTGTCTTTTTCCGTAT TGTCTTTTgcctgtctccgagctttataagaacattaagatgctcagttt attattggtagaaagtttttgaatttttcctctTATTtcccttcacaaaa agttttttaaatgcTAAATATCCTTGAATCTGTActcaatagaacacttg aattaatttggacatattttaggggtattttgtggaaaaaatagtttttc gccaaaattgaaattataagaaccatattcaagatgacaactttcttgTC AGTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNTTagatttcttattgttgatcttt cctttacaatgattttataatgcaagtgtattatcaagggtatatcatta atgtctaaaacacactgagaagtaagtTTTAACGACAAACCagtaaaatt taccattaaagatacTACATTACTGATCTCTTGATCaaaaaatagtcatc aaatacgacagagatagaacaacagaagttcagatgttatcattccagcc gcggctttcttatactatggtctAATTTTATCTATTAGTATGATTTTAAC TATAGTGGAATCTTTATTCTACATTCCTATCGAAAGGGAACTGAAATCTT TGCCTGGATACAGTAGCTTcaagataaaaaagagaaaattaaaagatttg gTTTTTGGGTAAAACTTATGCATCCTTAGTACTTATTGTAGTTTTTCTCA ATTACAGACTGATACCAGAGGATGAAAACCTACAGATTCACCATACAGTG GGTAATAGTCGACAATACAAAGAACTTCCATTGAGTGCCACTCAAGTACC ATTACAGGTAACTTCTTCTTCATTGTTCTTTGGGTTTAGTAAGAACTACC TTAGGGGAAGaagttttggcgggaatttaatttggtggatggcttgaaaa attagatttggcggatgaaggacatttttcttacaaaaaaacgcaattaa attagaaaaaaaaacctgttttaaaagCCTGAAATGgaatagcacacatt tgggtGAATAAATACAGTAATTTAAATTTGACTGGaaattaatttggcgg attttgatCAAATCCACCAAAGCCGCCGAATTTACTTtccaacaaaattt cttcccaagGTAAACACAAGTAAACCAAACTGAACGattgtttcaaataa aatagTCCAGAGTAACTTTTTTTTCCATCTAAAAAAGAAaggcttatttt ttttaaactcttCTTCGGAGACCTCAGCTCTTTAACAAAATGAAGGTCAA GAGctttacttttttcaattttcactgtCCTGAAGTTATTATTACCGAGT TTTTGTATTGGAGGATATCGAGGgtgacggtaagtgaaatcgatacaaaa taGAGTCGATAGTTCATGTACAGCTCACCTAAaaagacgacggtattttg gtatttttaccgtcgtcgagcaaagtttGCGTTATATTgtcccctcgatt tatctcgaatccTTAAACTTGCTATTGAAGAGGGTCCTGACgatcttttc atttttgtttcctTTAGTACGCTGATATCGTAGAATACTTCTTGTTGAGT TATCCTGAATATGTTCATGTTAAAGATGCACCAATTGATGACGACGAAAT CAAGGTTCCATTGacaattttttggacctacctccgggtaccccggtgga ggttctataaattaacccatgtccgtccgttcgttcgttcgttcgtccgt ccgtccgtccgtctgttaccagcttttctcaggattggctcattagtttt ttctgattttttgcacaatgatgcaaaatggcaatgcccagaacgtgacg gagcccgatttttgagaaaaaatttatttgggcaaatttgggccaaaaac tacctaaaaatagggttttttcgactttgtgcaaaatcctgtcatttctt ttttctgattttttgtacaaagatggagggcaagattctctaaagaatgg ctgaagtggtttttcccggaaaattcttattcgccttaaaaaacggattt tcgtattttggggaaattccctttaaccaaataagaaaatatagcttttc tcaatattgactcataattttcttctgattttttgcacaatgatgcaaaa tgacaatgcccaaaatgtgacggagctagatttttaaggaaaatatattt gggcaaatttgtgccaaaaacagcttaaaaggtatTTTGgacctgaatgg tttaagtgattttcgtatttggggaaattcctttttaccattttacatta ttcaacacacaagctttNatttttaccattttacattattcaacacacaa gctttattttccattctgaatttttgtacaattattgtcacttttttctt attttcatctgatgttaatcattaggtaggtccattcagcatgttgcttg tttatccTTATGTTTTAATCGTTGATCATATGCATTTATTGCTGAAGTGA AAGCCCGGTTGACAGCTTCCACCCTGAAGTTAACACGTTCACCATAGATA CCTTCTCAAAAATTGTAAGAATTGACTCCtttgaaatttcattgaaaGTT TAACTTTCAGAGTGGCTCATATGGTCTTCCCAACCCTGAACCCAAAGTCT CATGATAAAAACCAAatcttttgatgtaatttctttttCGTTACAGCTTG AACTGGCAGAAAAGCTCTACGATCTTGGCTTACTGATGACAGAATAGTGG AGTTGATTAATCCAAAGGTTTTATACGCAAggtttttatgcattttttat tattttttggaactttttacTATAAATAAATATCATATGCATTTCAGTTG CGATAGAAATAGAAATGCTCATTCGCTTAGCACTCGATCGGTCGGCTCTT GTGCAAATCAAGTTATGGTGGTAGATAAATCGTGACGTTGTACTTTGTCA TTCATCGTTATCCCATTTATCAAATAGACTCTGGCTATTTTGATGCACAT TTTTATACAAAACTAAATTTTAGAAGGATAATAGAGGTAAATGTTGTATG AATTATATTTTAATAAACAAACGAGAATATATTTATAACATATCATACTT AAATACAAACAACCTCATGTAACCTATCCCCCTGCTGTTACGATAAGCCT GATAGACAATACAGCAACTTTTCAATCATTTtagaacgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045129XLOC_045129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072706-exon-scaffold_82-1491911889:476233..476361TCONS_00072706-exon-scaffold_82-1491911889:476233..476361Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:476233..476361TCONS_00072706-exon-scaffold_82-1510915933:476233..476361Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:476233..476361TCONS_00072706-exon-scaffold_82-1575043694:476233..476361Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1491911889:476677..476776TCONS_00072706-exon-scaffold_82-1491911889:476677..476776Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:476677..476776TCONS_00072706-exon-scaffold_82-1510915933:476677..476776Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:476677..476776TCONS_00072706-exon-scaffold_82-1575043694:476677..476776Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1491911889:477080..477193TCONS_00072706-exon-scaffold_82-1491911889:477080..477193Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:477080..477193TCONS_00072706-exon-scaffold_82-1510915933:477080..477193Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:477080..477193TCONS_00072706-exon-scaffold_82-1575043694:477080..477193Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1491911889:477449..477555TCONS_00072706-exon-scaffold_82-1491911889:477449..477555Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:477449..477555TCONS_00072706-exon-scaffold_82-1510915933:477449..477555Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:477449..477555TCONS_00072706-exon-scaffold_82-1575043694:477449..477555Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1491911889:477860..477967TCONS_00072706-exon-scaffold_82-1491911889:477860..477967Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:477860..477967TCONS_00072706-exon-scaffold_82-1510915933:477860..477967Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:477860..477967TCONS_00072706-exon-scaffold_82-1575043694:477860..477967Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1491911889:480663..480697TCONS_00072706-exon-scaffold_82-1491911889:480663..480697Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:480663..480697TCONS_00072706-exon-scaffold_82-1510915933:480663..480697Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:480663..480697TCONS_00072706-exon-scaffold_82-1575043694:480663..480697Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1491911889:480812..480990TCONS_00072706-exon-scaffold_82-1491911889:480812..480990Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:480812..480990TCONS_00072706-exon-scaffold_82-1510915933:480812..480990Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:480812..480990TCONS_00072706-exon-scaffold_82-1575043694:480812..480990Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1491911889:481116..481220TCONS_00072706-exon-scaffold_82-1491911889:481116..481220Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:481116..481220TCONS_00072706-exon-scaffold_82-1510915933:481116..481220Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:481116..481220TCONS_00072706-exon-scaffold_82-1575043694:481116..481220Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1491911889:481879..481971TCONS_00072706-exon-scaffold_82-1491911889:481879..481971Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:481879..481971TCONS_00072706-exon-scaffold_82-1510915933:481879..481971Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:481879..481971TCONS_00072706-exon-scaffold_82-1575043694:481879..481971Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1491911889:482751..482799TCONS_00072706-exon-scaffold_82-1491911889:482751..482799Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:482751..482799TCONS_00072706-exon-scaffold_82-1510915933:482751..482799Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:482751..482799TCONS_00072706-exon-scaffold_82-1575043694:482751..482799Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1491911889:482941..483058TCONS_00072706-exon-scaffold_82-1491911889:482941..483058Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:482941..483058TCONS_00072706-exon-scaffold_82-1510915933:482941..483058Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:482941..483058TCONS_00072706-exon-scaffold_82-1575043694:482941..483058Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1491911889:484840..484939TCONS_00072706-exon-scaffold_82-1491911889:484840..484939Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:484840..484939TCONS_00072706-exon-scaffold_82-1510915933:484840..484939Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:484840..484939TCONS_00072706-exon-scaffold_82-1575043694:484840..484939Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1491911889:485650..485736TCONS_00072706-exon-scaffold_82-1491911889:485650..485736Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:485650..485736TCONS_00072706-exon-scaffold_82-1510915933:485650..485736Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:485650..485736TCONS_00072706-exon-scaffold_82-1575043694:485650..485736Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1491911889:486779..487273TCONS_00072706-exon-scaffold_82-1491911889:486779..487273Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1510915933:486779..487273TCONS_00072706-exon-scaffold_82-1510915933:486779..487273Clytia hemisphaericaexon
TCONS_00072706-exon-scaffold_82-1575043694:486779..487273TCONS_00072706-exon-scaffold_82-1575043694:486779..487273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:476233..487273 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 2.85545 2.83035 0.925387 1.28228 0.689913 0.577352 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
BLAST of TCONS_00072706 vs. Swiss-Prot (Human)
Match: RIOX1 (Ribosomal oxygenase 1 OS=Homo sapiens GN=RIOX1 PE=1 SV=2)

HSP 1 Score: 417.542 bits (1072), Expect = 5.318e-137
Identity = 201/434 (46.31%), Postives = 285/434 (65.67%), Query Frame = 2
Query:   74 ADHLFAWVIAPVKTEQFFSDVWQRKPLFIKRRQSNYNKVWFSTKEFDNILKKQNVQFTKNLDIAVFRNGQRETLNPDGRAFAPMVWRFYKEGCSIRMLNPATFSSNVWHLCSKLQEYFGCLVGANVYLTPPASQGFAPHYDDIEAFVVQLEGKKRWRLYSPRDINETLARHSSQNLSPDELGEPILDRVLEAGDSLYFPRGMIHQAITQDDSHSLHLTLSVHQKCCWSDYMEKLVPLALQAAIEEDIDFRKALPIGFQNHIGMANSEKKSEERKSFMKTAEQLMKKLVSFVSIDEAGDELALDQMEEYLPPSLSEDEKQRSVSGTGAFWDNND-IKMKSKITLKSRVRLLRPGIVRLIPEDENLQIHHTVGNSRQYKELPLSATQVPLQYADIVEYFLLSYPEYVHVKDAPIDDDEIKLELAEKLYDLGLLMTE 1372
            A  LF W+IAP+  + F+  +W+R+ + ++R+   Y +  FST + D++L+ + VQF ++LD A + NG+RETLNP GRA     W  Y+ GCS+R+L P  FS+ VW   + LQE FG + G+NVYLTPP SQGFAPHYDDIEAFV+QLEG+K WR+Y PR   E LA  SS N S D+LGEP+L  VLE GD LYFPRG IHQA  QD  HSLHLTLS +Q+  W D++E ++PLA+QAA+EE+++FR+ LP  F +++G  +S+ K   R +FM+    L+ +L  F  +D   D+ A D + + LPP L++ E+  SV G    W+  + + + +++T ++ V +L+ GI RL+ E  +L +++TV NSR Y        ++  Q AD +E  L SYPE+V V D P D  E +L LA  LYD GLL+T+
Sbjct:  202 AARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDHTYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALPAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRVPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERALSVYGLPIRWEAGEPVNVGAQLTTETEVHMLQDGIARLVGEGGHLFLYYTVENSRVYHLEEPKCLEIYPQQADAMELLLGSYPEFVRVGDLPCDSVEDQLSLATTLYDKGLLLTK 635          
The following BLAST results are available for this feature:
BLAST of TCONS_00072706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RIOX15.318e-13746.31Ribosomal oxygenase 1 OS=Homo sapiens GN=RIOX1 PE=... [more]
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