TCONS_00072704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072704
Unique NameTCONS_00072704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1097

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072704 ID=TCONS_00072704|Name=TCONS_00072704|organism=Clytia hemisphaerica|type=transcript|length=1097bp
AAATAGTTTATTTATAACGAGAAGATCTGAGTTGCATAGGTTGTTCTTCG
GtggttttttttgatttcagaaGCCTTGATTGCCTCATAAGTAATTAGTT
GAACTCGACCATGTATTGCTGGATATTGCTGATATTTACACATATTCTGA
TGTACGGCGAAGCATCAACACTTCAAACATACAACTCTGGAATCCGATtc
gaatgcaaaatatttcCCGGTTTTTATATCGGTTTTgaggaaaatgaaat
attggAAAATTCAAATGAAACGTTATTGTATTTAAAAGAAGACAGTATGG
TATCCAATAGAACTTTATGGTTTGTTGAAAAGCAAATCGAATGTAACAAA
AATGATTATGATGGATTCTATCTTCGTTCGTATACTTACCCTCAATATTA
TATGTCTTTAACGATTAAGAATACACTTCAATTGACCAGATCATCTGATT
CAAAAGCATGTCTCATAGCagcagataaagaaaatggtaCAGTGACAATC
GAATTCTCAAAGTCTACAGACTATTCCTTCTTTGGAATTAACGCTGTTAA
CCATACTATTGACTTTGTGACTACCTCTATGGTAGATAATAACATATTTT
TCGAAACTTGGAAGCCGGAATATAACGcaCACCAGGAAACAAAGGGGAAC
TGTGATAGTGCTGGCGGAGCATGGAGCATATGGAGTGATTGGAGTCTTTG
TAGCTCATCATGTGGTAATGATGGAATACAAAAAAGATATCGAAAGTGTT
TCTCTGATCAATGTTTGATTGAATTCGATGTGGATATCAAAACTTGTAAT
CGTCAAAGGTGCCCAGTACAAGCAGACTACTACACAACGCTTTGGAAATG
TTATTACTGGCCTCCCGTTCATGGTCAATGGAGCAATTGGTCAACTGTAA
ACGAAACNATGTTATTACTGGCCTCCCATTCATGGTCAATGGAGCAATTG
GTCAACTGTAAACGAAACATTCCAAAACGAGACGACGTGCCCAGGGAAAC
TTTCGTTCGCAACACGACAGTGCGATTCTCCGACACCAGAGTATTGCGGA
ATGTATTGTGGATCCAGTAGTATCAAGATTGATATATTTCCTGGTAT
Run BLAST on NCBI

protein sequence of TCONS_00072704-protein

>TCONS_00072704-protein ID=TCONS_00072704-protein|Name=TCONS_00072704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MYCWILLIFTHILMYGEASTLQTYNSGIRFECKIFPGFYIGFEENEILEN
SNETLLYLKEDSMVSNRTLWFVEKQIECNKNDYDGFYLRSYTYPQYYMSL
TIKNTLQLTRSSDSKACLIAADKENGTVTIEFSKSTDYSFFGINAVNHTI
DFVTTSMVDNNIFFETWKPEYNAHQETKGNCDSAGGAWSIWSDWSLCSSS
CGNDGIQKRYRKCFSDQCLIEFDVDIKTCNRQRCPVQADYYTTLWKCYYW
PPVHGQWSNWSTVNEXMLLLASHSWSMEQLVNCKRNIPKRDDVPRETFVR
NTTVRFSDTRVLRNVLWIQ
Run BLAST on NCBI

transcript from alignment at scaffold_82:436436..446863+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072704 ID=TCONS_00072704|Name=TCONS_00072704|organism=Clytia hemisphaerica|type=transcript|length=10428bp|location=Sequence derived from alignment at scaffold_82:436436..446863+ (Clytia hemisphaerica)
AAATAGTTTATTTATAACGAGAAGATCTGAGTTGCATAGGTTGTTCTTCG GtggttttttttgatttcagaaGCCTTGATTGCCTCATAAGTAATTAGTT GAACTCGACCATGTATTGCTGGATATTGCTGATATTTACACATATTCTGA TGTACGGCGAAGCATCAACACTTCAAACATACAACTCTGGAATCCGATtc gaatgcaaaatatttcCCGGTTTTTATATCGGTTTTgaggaaaatgaaat attggAAAATTCAAATGAAACGTTATTGTATTTAAAAGAAGACAGTATGG TATCCAATAGAACTTTATGGTTTGTTGAAAAGCAAATCGAATGTAACAAA AATGATTATGATGGATTCTATCTTCGTTCGTATACTTACCCTCAATATTA TATGTCTTTAACGATTAAGAATACACTTCAATTGACCAGATCATCTGATT CAAAAGCATGTCTCATAGCagcagataaagaaaatggtaCAGTGACAATC GAATTCTCAAAGTCTACAGACTATTCCTTCTTTGGAATTAACGCTGTTAA CCATACTATTGACTTTGTGACTACCTCTATGGTAGATAATAACATATTTT TCGAAACTTGGAAGCCGGAATATAACGGTGAGTTATTGGCAAGGCTATGG TTCAACAAACCTTTTTGTtaagttaattttttgttttcattaccATATTG CATCGAACATACACTCCTTTTTTNATGTttagttaattttttgttttcat taccATATTGCGTCGAACATTCACTCCTTTTTTAAACGCCCTCTCAAGCA AATAAGGCCCCTCTTGAAAgaattctttttggctttttcgtTTACTAAGA TGGGCAAACTTCTCAGAAAGGAAAAATCTTTATCCGAAACTTCTTCATAA GAGAAGACAGAAACAGAAAATCTTCTTGATAAaagctttaaaggttttgt ttttagataagagtgctatcgtttgcttactcatcaattttaattcagaa ACGGACACGGATggaagacactgtcccgatatgaaatatgtgtctgagat gaaacgggaacatttatgtaaaaacaaaacctttaagcttTAAGTGTGTA ATaatctaaatattttcatttttcattttagcaCACCAGGAAACAAAGGG GAACTGTGATAGTGGTAagctttttctattgttttatgtttGCTTTTATA AAAGACCTTATGCAAAATCTTAATGGATTCTTAcagattttaaattattt tcatttgtgTATGCAGTTGAAACAAAATTGGGTCAAACTGCGCCACCTAT TAAAGAAACTATCTTTGTAAAAATTAAGCGAACGAagtgactacaaattg tttggATATTTTCCCTCTTTTTAGCCGAAAATTGCTGATTTAGAGTGAAA AAACACAAATGAGCACAGAAATTAGCAATCACAGACACGCTTTTGCAGGG ATAAATGACTaacctatactagacgtcacggctTTTTTTCTACGCTGTAA CGTCTAATCCACTTTGCGACCTTTTCGAATGTTTCACTTTAAAGGTTTGA AGCTCTTGTAGTATCAAAAAATAGTGTATATGTATaggaattgcgaagcg atccaggcaatcactcgattcgcaagttgcaagcaaaatatttatagggt cactaGAATCGTAAATACAAACCCTAGATACAACTGCTCAGGTCCAGGAA GACTTTGCTCCTTTAGAGATTTACTCAAACACTTCAGGCGTACAACAAAC TTACAACGTTTACTTCTACGAATTTGAGGAAGATTATACAAATTGTTTCA CAAATCGTTGGAAAATCAGCAATTTCAAATGAATGTGACTTATataccct aaaaatatttctttaatccATTATGCTCTTCTNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNCTCTTCTCTACTCTCtaagaatattcaataaaaa gttcaaaaattgtttttgctcGGGAAAGTTTGTCTGCCTTAAGCATTGAG TATTTTTAGTTATTAGTgaattagtttttgttttgaacttgttTAACTTC CGGTTTTGAATTCCTTGCGTTtgaaatcgaactttcgaattataaaaaga acattcgaaaactttttttccaaattgcaattttttgatacaccccttaa cgaaagaactaacataaacacccctgtgtcacatacCCGCNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTAAAACATCAC Ccggtttattgagacagggatgtaaaagaaggaggatttcaagactagaa tttaatggaaataaGTCGACTtatacaatttcaaaattcaataatcgTAC GCAGTATAATTGcatcataaattctgaaaaatttaacaatgttctaaaat tatattaaaactatTAGCGCTGTAAGATCTTGagatgaaaattatgaaaa accagataaaaaataaagatctgagattttgaaagaattcttcaacGATG ATACTAATTGCTACTAATGCTCTATATTTTACTGGCtgtgtattttttca aagttgggaaatCTAAAGGCTCTTAATCTTAAGTATGTTGGAGACAAGTA TGACAAGTCTTTCACCCTTGAGTTGTTGACAAccaggagcaaactcttca cataaacTAGCAATTAGCTTTCGCTATGATGCTCCCGATGACAGGCATTT GACAGTGATTGAtcgaaattcagaaaaggcgaaatgccgtgtttattttt gtcagaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNTAGgaatagagaagaagaaactgtcaatagataatttgtaataaatat cCAGGTGATGTCAATCAGACTGTTTGATTACTGTGAAAAAAGGTAATCAC TGAAAGGAAACTGGTATCGCCTCCAAATAGTATAGCTTTCTggtaataaa attgtaaaaattcaaaagtcaaaaacatataATTTACATTTTAGCTTAGA CAAAGTGCAGATCAAGAAAGGTCTGCAGTTTGGAGGCAATGTAAAGTTTC CCTCAAATGATGCAAATTACACTTTTTCACGGGTACCAATCTaatctaaa attttatcaaacgaTAGGTGATAGGTGTTAGATTACcgcaaccaaatcga acagtcacgaaactaaaagattctggtaaagttgaattatgttcgaacga ccctgccgattccccggACTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGG TCACTAGGTTACATCGTCCCgttcttgaacaatttttcgccagctcgatc cccagcacggcctcgtgaagcaacataggctcccttcgggagcaaaaagt gaaaaaaaaatctgtgacttttttctcggctgtattaattgtagcacaga aattaaaaacagttaaagtgcatcataaaaataatgtcaagttTTGTCGA TGTATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNgtattttgacattttacaagtcat taacattaccattaccaacaataaaatcctttaaaatacaATCCCATTTC AATGTTCTATTTCCCTGACCACCAATAcgtattcataaacaacaaacaac aaccacgGAGTCCATATCATCGAGGGTGTCGGccaagcaaaaatttaaaa acaacaacagagAAACAGTTCTTCTTCCACTCAATAAGGGaaggaataaa ttcttccaggttaaccatatccaaaatattttatctttttcccatttcaa aacatactaaaattcCAAATTCATGTTGTGCTCTCTACTACCAAGATCCA ATCATCTAAGGAATGGTTCTCCCACCATCATATAATACAGTTTATTTTCC AGCTTTGAACCTCTTTTTGCAACGAAGCAACAACTCCGTTGAGGCTGCTG TCCTGTTGACGAAgcaataaaaattccatcttctttctttctccagctgc tttcttcgtttcttttcatcaagcaccttttcttttcaaagcaccaacgt ctcttttcaaaaaaacaacaatgattttatttttcaaagacagagtcaac attcgaattcagagtcaacattcgaatatggaaaagttcgaaaatctttt cccgagtcaatgcaacgacttcttgaaaaacgagcgtttgaacgcttcca gcccgcgctgattttccaatctgttttttaaatttcctaatttaGACATT AGGGAGATAATCGAAACAGAAACTCAAGGCAAGATTGTCTCCGCAACATT TAAGATCTGGTATACACCCTCTACACTAAAAACCAATTGTTCCAAATTTA CGGAAGCGACGGATAGAAGAAATGTATGAGAAAGTGCCGCCTGATGGATC GATATGATGTTTTCAGTACCGTAGAAAACGCACATCAATTTTTCCTTGGC GCTCCCCTGGTATatacactgacctttatataaccctggaccaagcaata tctgccatctttgattggagtttttttagaattggtacccaaggagaagc cattgcaatgctaaaaattaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNcgacattagggtaccaattttcaaaaaactc cgatcaaagattttgcttggctgggattgagaagctttgtccagggtata taaaggtcagtgggtatatagaatttaaaggtacatgcacacgatatcaa aactgcttcgctcatgtatattcgcttcgcaaaaatcgaacttgcgtcaa aacacttgaaagacttctaatcgtcaaagtggaactcactaagaaacagg atgaaaaatcccggtttttggtgaggtttttggtgaggtgctcgctgGGA AATGACATACTAGTAGTGGAGTTTACTATATCATTTCCCTGCTTTTTGGT GCCCCAATTAAATTGACGCTTAGTTTGCTTGAAATAAACTACTTTGATCA TTTGGTCAACTCGTTATTAAAAGACGTAGGTCAGTACTTATCTTCCAGGG CTACTAGAAGTGTCTTATCCTAACAAGAATGGCTATTGTTTAAGTTTTGA AGCTCAAATTCTTGATAtccgtaagtcatttttctagcggtaACACCCAA GAGAatccgggatttgacctctctctgttactaaaaatagaaacacggag ctcaaaatccggcttttttcGAATGCTTccccgttaaaaaatatgacgtc atcttgacttacgcatatcaaaaatacagtagcgtagacaagaggggcgc aaaatttgtgtaggagagtagATTTTATGACACTCTCGTTATCTATTCAT Aattaaaaaagataattacagtgtcataaaaatctgctctcccacgcaaa ttttgcgcccctcctgtctacgctactgcaaATAGGCCCCTTGTGTATTT TTTCGCTATCtaataaaatcatttttcgaaatggaaaaaaaaacagatct ttttcgaaaatctttttatttctcattatacTTTAGCTGGCGGAGCATGG AGCATATGGAGTGATTGGAGTCTTTGTAGCTCATCATGTGGTAATGATGG AATACAAAAAAGATATCGAAAGTGTTTCTCTGATCAATGTTTGATTGAAT TCGATGTGGATATCAAAACTTGTAATCGTCAAAGGTGCCCAGGTAgctaa aagtaaataaaatctGACCCTTATATCATAGTACCCAGAGCCACTGGTGG TACCATTTTTTCATGCCATTTCATACCATTTCACTGATGGGCGTTGGTAA AACCCTGAGCTCTATCagaattataaaaaagtgaacGAAGGAACTAAATT CGAGTTTGTTATTATACGACTTCCAGGTACCTTTCTTTTTATGATACTGA GAAAAAGTTCTTTCCTAGTCCTATTTTTTAAACAGGTGTACTGATCTAAT TGTTCTATCCCGAAATTACAAGAATTCTAGCTTTGTTGCCACCGGAGGAg gcctaaagcttctgaggatggcattcatagcttcacgcataaggaagttg ggcaaacatctcataattttgcgcgcgtttttcagtattttagttcaaCT TAACGGTAAGCAGTCTTATCTTACGGTcactctattgttttatcatcatc aaaaagactcttgaagacttttccggagttattttgatctgatgaCTCAT TTTGAtatgtcagtttgtctttttcttatccctggagagttaaatgaatc taaggaaattcccttttctgggaaattccctttttataccacaagtagtt gttaagcgctcttcataggttaaaaatattactctactcaaagtattcga aagttgctaaacgtgtacattagtaaaatcagggatatgttatagcggag ctggataacgcacatttaaaaaagccttgttctatctctgtccctcacat taaaatttgatatgaaatttaacttttttaattacaagctcgtgaaattt ggatttcctcttagccaatgattctgctgctgcatttatcgttcaagagg gtctgtaaaaaattggttaatgacaatttaaaaaaatgagaaacattgtt ttcattagtaaagttataagaagtttcttctctgatattataaatagtac tttttcatttgaaataccgcgctacaccacggggtgcctcactttctaac taatattttcagatagcaagtcggtatgtctgattatggaaaaaatttca ggtcaattgaaacaatatttgtcaaaatatttacgtctgaaatttttaaa gagaaatcatgaaagcttctcaaattcataacacgcgctgataaaaatag atttcatttacaaggaagcttttgggttatcttctacaaatattattttg atgaaaagcgggaacaccatagcaaaatatgtgcaaacgtactgcatgaa tactttgtctgcttcatttttcataaaaacagaacactcaaggggacaga gatggatttctattatcaacagtttacaatagaaaagacaaagaagcaat ccgctaaggaattctcgtccttcatccagctccgctataacatatccctg gtaaaataacatatgaagagcagtatcctcagatatacacgctttttata ggaaaaaacaGTAAGTCATAggattctggctgggctgctcttaaatttat atgagtttttcagccttaaatgtcaatgttaattaaaatggaaacatgta cttctcagtaatttctgaaatcagaggttcagattcttcttaatttgttc ttacgttttggccaaatttcagcctcgtattcttatgaaattgttcttat aaaaaacgtgtaggacaAGGCACGGAtatcactctaagtagactgtaaat cactcccttgacacatttgttagcagttgaaagaattttgtctcagatga gaggtcactcttaacaaaattactgtagggctaagatcattccttttgaa cacAAACTCAACTCTAtatgttcgttttgctgcggtggcaccttaatgaa agttatggctagtataTTTACTAATCCATAGCGCattattctttattttc ctcaaaataactttatataattttcTAAACCTAAGCCTCTAGTGAAGATT TAAGTTTTGATAActaaataattttaattttcgatttttgattcCAGTAC AAGCAGACTACTACACAACGCTTTGGAAATGTTATTACTGGCCTCCCGTT CATGGTCAATGGAGCAATTGGTCAACTGTAAACGAAACNATGTTATTACT GGCCTCCCATTCATGGTCAATGGAGCAATTGGTCAACTGTAAACGAAACA TTCCAAAACGAGACGACGTGCCCAGGGAAACTTTCGTTCGCAACACGACA GTGCGATTCTCCGACACCAGAGTATTGCGGAATGTATTGTGGATCCAGTA GTATCAAGATTGATATATTTCCTGGTAT

Coding sequence (CDS) from alignment at scaffold_82:436436..446863+

>TCONS_00072704 ID=TCONS_00072704|Name=TCONS_00072704|organism=Clytia hemisphaerica|type=CDS|length=3840bp|location=Sequence derived from alignment at scaffold_82:436436..446863+ (Clytia hemisphaerica)
ATGTATTGCTGGATATTGCTGATATTTACACATATTCTGATGTACGGCGA
AGCATCAACACTTCAAACATACAACTCTGGAATCCGATtcgaatgcaaaa
tatttcCCGGTTTTTATATCGGTTTTgaggaaaatgaaatattggAAAAT
TCAAATGAAACGTTATTGTATTTAAAAGAAGACAGTATGGTATCCAATAG
AACTTTATGGTTTGTTGAAAAGCAAATCGAATGTAACAAAAATGATTATG
ATGGATTCTATCTTCGTTCGTATACTTACCCTCAATATTATATGTCTTTA
ACGATTAAGAATACACTTCAATTGACCAGATCATCTGATTCAAAAGCATG
TCTCATAGCagcagataaagaaaatggtaCAGTGACAATCGAATTCTCAA
AGTCTACAGACTATTCCTTCTTTGGAATTAACGCTGTTAACCATACTATT
GACTTTGTGACTACCTCTATGGTAGATAATAACATATTTTTCGAAACTTG
GAAGCCGGAATATAACGcaCACCAGGAAACAAAGGGGAACTGTGATAGTG
CTGGCGGAGCATGGAGCATATGGAGTGATTGGAGTCTTTGTAGCTCATCA
TGTGGTAATGATGGAATACAAAAAAGATATCGAAAGTGTTTCTCTGATCA
ATGTTTGATTGAATTCGATGTGGATATCAAAACTTGTAATCGTCAAAGGT
GCCCAGTACAAGCAGACTACTACACAACGCTTTGGAAATGTTATTACTGG
CCTCCCGTTCATGGTCAATGGAGCAATTGGTCAACTGTAAACGAAACNAT
GTTATTACTGGCCTCCCATTCATGGTCAATGGAGCAATTGGTCAACTGTA
AACGAAACATTCCAAAACGAGACGACGTGCCCAGGGAAACTTTCGTTCGC
AACACGACAGTGCGATTCTCCGACACCAGAGTATTGCGGAATGTATTGTG
GATCCAGTAGATGTATTGCTGGATATTGCTGATATTTACACATATTCTGA
TGTACGGCGAAGCATCAACACTTCAAACATACAACTCTGGAATCCGATtc
gaatgcaaaatatttcCCGGTTTTTATATCGGTTTTgaggaaaatgaaat
attggAAAATTCAAATGAAACGTTATTGTATTTAAAAGAAGACAGTATGG
TATCCAATAGAACTTTATGGTTTGTTGAAAAGCAAATCGAATGTAACAAA
AATGATTATGATGGATTCTATCTTCGTTCGTATACTTACCCTCAATATTA
TATGTCTTTAACGATTAAGAATACACTTCAATTGACCAGATCATCTGATT
CAAAAGCATGTCTCATAGCagcagataaagaaaatggtaCAGTGACAATC
GAATTCTCAAAGTCTACAGACTATTCCTTCTTTGGAATTAACGCTGTTAA
CCATACTATTGACTTTGTGACTACCTCTATGGTAGATAATAACATATTTT
TCGAAACTTGGAAGCCGGAATATAACGcaCACCAGGAAACAAAGGGGAAC
TGTGATAGTGCTGGCGGAGCATGGAGCATATGGAGTGATTGGAGTCTTTG
TAGCTCATCATGTGGTAATGATGGAATACAAAAAAGATATCGAAAGTGTT
TCTCTGATCAATGTTTGATTGAATTCGATGTGGATATCAAAACTTGTAAT
CGTCAAAGGTGCCCAGTACAAGCAGACTACTACACAACGCTTTGGAAATG
TTATTACTGGCCTCCCGTTCATGGTCAATGGAGCAATTGGTCAACTGTAA
ACGAAACNATGTTATTACTGGCCTCCCATTCATGGTCAATGGAGCAATTG
GTCAACTGTAAACGAAACATTCCAAAACGAGACGACGTGCCCAGGGAAAC
TTTCGTTCGCAACACGACAGTGCGATTCTCCGACACCAGAGTATTGCGGA
ATGTATTGTGGATCCAGTAGATGTATTGCTGGATATTGCTGATATTTACA
CATATTCTGATGTACGGCGAAGCATCAACACTTCAAACATACAACTCTGG
AATCCGATtcgaatgcaaaatatttcCCGGTTTTTATATCGGTTTTgagg
aaaatgaaatattggAAAATTCAAATGAAACGTTATTGTATTTAAAAGAA
GACAGTATGGTATCCAATAGAACTTTATGGTTTGTTGAAAAGCAAATCGA
ATGTAACAAAAATGATTATGATGGATTCTATCTTCGTTCGTATACTTACC
CTCAATATTATATGTCTTTAACGATTAAGAATACACTTCAATTGACCAGA
TCATCTGATTCAAAAGCATGTCTCATAGCagcagataaagaaaatggtaC
AGTGACAATCGAATTCTCAAAGTCTACAGACTATTCCTTCTTTGGAATTA
ACGCTGTTAACCATACTATTGACTTTGTGACTACCTCTATGGTAGATAAT
AACATATTTTTCGAAACTTGGAAGCCGGAATATAACGcaCACCAGGAAAC
AAAGGGGAACTGTGATAGTGCTGGCGGAGCATGGAGCATATGGAGTGATT
GGAGTCTTTGTAGCTCATCATGTGGTAATGATGGAATACAAAAAAGATAT
CGAAAGTGTTTCTCTGATCAATGTTTGATTGAATTCGATGTGGATATCAA
AACTTGTAATCGTCAAAGGTGCCCAGTACAAGCAGACTACTACACAACGC
TTTGGAAATGTTATTACTGGCCTCCCGTTCATGGTCAATGGAGCAATTGG
TCAACTGTAAACGAAACNATGTTATTACTGGCCTCCCATTCATGGTCAAT
GGAGCAATTGGTCAACTGTAAACGAAACATTCCAAAACGAGACGACGTGC
CCAGGGAAACTTTCGTTCGCAACACGACAGTGCGATTCTCCGACACCAGA
GTATTGCGGAATGTATTGTGGATCCAGTAGATGTATTGCTGGATATTGCT
GATATTTACACATATTCTGATGTACGGCGAAGCATCAACACTTCAAACAT
ACAACTCTGGAATCCGATtcgaatgcaaaatatttcCCGGTTTTTATATC
GGTTTTgaggaaaatgaaatattggAAAATTCAAATGAAACGTTATTGTA
TTTAAAAGAAGACAGTATGGTATCCAATAGAACTTTATGGTTTGTTGAAA
AGCAAATCGAATGTAACAAAAATGATTATGATGGATTCTATCTTCGTTCG
TATACTTACCCTCAATATTATATGTCTTTAACGATTAAGAATACACTTCA
ATTGACCAGATCATCTGATTCAAAAGCATGTCTCATAGCagcagataaag
aaaatggtaCAGTGACAATCGAATTCTCAAAGTCTACAGACTATTCCTTC
TTTGGAATTAACGCTGTTAACCATACTATTGACTTTGTGACTACCTCTAT
GGTAGATAATAACATATTTTTCGAAACTTGGAAGCCGGAATATAACGcaC
ACCAGGAAACAAAGGGGAACTGTGATAGTGCTGGCGGAGCATGGAGCATA
TGGAGTGATTGGAGTCTTTGTAGCTCATCATGTGGTAATGATGGAATACA
AAAAAGATATCGAAAGTGTTTCTCTGATCAATGTTTGATTGAATTCGATG
TGGATATCAAAACTTGTAATCGTCAAAGGTGCCCAGTACAAGCAGACTAC
TACACAACGCTTTGGAAATGTTATTACTGGCCTCCCGTTCATGGTCAATG
GAGCAATTGGTCAACTGTAAACGAAACNATGTTATTACTGGCCTCCCATT
CATGGTCAATGGAGCAATTGGTCAACTGTAAACGAAACATTCCAAAACGA
GACGACGTGCCCAGGGAAACTTTCGTTCGCAACACGACAGTGCGATTCTC
CGACACCAGAGTATTGCGGAATGTATTGTGGATCCAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045128XLOC_045128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072704-exon-scaffold_82-1491911889:436436..437062TCONS_00072704-exon-scaffold_82-1491911889:436436..437062Clytia hemisphaericaexon
TCONS_00072704-exon-scaffold_82-1510915933:436436..437062TCONS_00072704-exon-scaffold_82-1510915933:436436..437062Clytia hemisphaericaexon
TCONS_00072704-exon-scaffold_82-1575043694:436436..437062TCONS_00072704-exon-scaffold_82-1575043694:436436..437062Clytia hemisphaericaexon
TCONS_00072704-exon-scaffold_82-1491911889:437567..437599TCONS_00072704-exon-scaffold_82-1491911889:437567..437599Clytia hemisphaericaexon
TCONS_00072704-exon-scaffold_82-1510915933:437567..437599TCONS_00072704-exon-scaffold_82-1510915933:437567..437599Clytia hemisphaericaexon
TCONS_00072704-exon-scaffold_82-1575043694:437567..437599TCONS_00072704-exon-scaffold_82-1575043694:437567..437599Clytia hemisphaericaexon
TCONS_00072704-exon-scaffold_82-1491911889:444422..444577TCONS_00072704-exon-scaffold_82-1491911889:444422..444577Clytia hemisphaericaexon
TCONS_00072704-exon-scaffold_82-1510915933:444422..444577TCONS_00072704-exon-scaffold_82-1510915933:444422..444577Clytia hemisphaericaexon
TCONS_00072704-exon-scaffold_82-1575043694:444422..444577TCONS_00072704-exon-scaffold_82-1575043694:444422..444577Clytia hemisphaericaexon
TCONS_00072704-exon-scaffold_82-1491911889:446583..446863TCONS_00072704-exon-scaffold_82-1491911889:446583..446863Clytia hemisphaericaexon
TCONS_00072704-exon-scaffold_82-1510915933:446583..446863TCONS_00072704-exon-scaffold_82-1510915933:446583..446863Clytia hemisphaericaexon
TCONS_00072704-exon-scaffold_82-1575043694:446583..446863TCONS_00072704-exon-scaffold_82-1575043694:446583..446863Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072704-proteinTCONS_00072704-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:436436..446863 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.569783 0.278722 0.409045 0 0 0.302848 1.6795 0.52527 0.194229 1.00545 11.3854 10.5212 3.76644 4.38142 1.51046 1.27507 10.8718 9.0381 1.75272 2.84787 0.288497 0 0.487627 0.435996 0.499808 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top