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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072692 ID=TCONS_00072692|Name=TCONS_00072692|organism=Clytia hemisphaerica|type=transcript|length=6760bpRun BLAST on NCBI protein sequence of TCONS_00072692-protein >TCONS_00072692-protein ID=TCONS_00072692-protein|Name=TCONS_00072692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2065bp LDVTTIKIIRSYYLKLNQIKMSANLETWLAEENSIVQKADNEKQVYLYDWRun BLAST on NCBI transcript from alignment at scaffold_82:311265..333111+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072692 ID=TCONS_00072692|Name=TCONS_00072692|organism=Clytia hemisphaerica|type=transcript|length=21847bp|location=Sequence derived from alignment at scaffold_82:311265..333111+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_82:311265..333111+ >TCONS_00072692 ID=TCONS_00072692|Name=TCONS_00072692|organism=Clytia hemisphaerica|type=CDS|length=198336bp|location=Sequence derived from alignment at scaffold_82:311265..333111+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072692 vs. Swiss-Prot (Human)
Match: HTR5B (HEAT repeat-containing protein 5B OS=Homo sapiens GN=HEATR5B PE=1 SV=2) HSP 1 Score: 1543.48 bits (3995), Expect = 0.000e+0 Identity = 870/2113 (41.17%), Postives = 1282/2113 (60.67%), Query Frame = 2
Query: 86 LAEENSIVQKADNEKQVYLYDWLDRLIEYLKGGTASNAEIKAIQPKIVNSLHKLLEINCSPATRQQLGKCYATLFNVGTTMGLFETVNKFFDIIKTRDDSPSHMAIKLSAICCVGDVYQSLGRMVGTLFDVGLQSLIKLLYKTEVQTKCEILLCMQKMLLGLQNAASYGYKDMYKACKVCLVDKTMSVRWAAAKCALELSKHAHFMCTTDLESMVSICLKALDNSNYDVRVQVSQLLGVLMAGSQTPN--TEKGSKVKKISIEDMFSLMAAXXXXXXXXXXXSG-EM-----NESREIRVGVTQAYVVFFREMGVKWVTKYLSGVIIHILELAASQKSNSTHIDAVYARKCVSFILNSVLSAMLPERSQIQAVKELCRIIVKQMNLIHETITSASKSSDIAMNVEVTGTQHVLVCALRELGNLVMGLTSSLKSCFDET---ITEAVFSTLIHPSPAVKLSAAWCIRACAIALPSNITNLIDGCLKKINSLKSSPEAVTGYGYTLAAIIGGLHRCPLGIPSGKARSLFLMTTNMLDDGGKGNRLSMAKIKTGWVLLGAICTMGPSFVKSCLAKMIQLWTSVFPDG-PDIDAEKGRGSLKTWQRTLENRAGALCSLNSFVINCRSLLVPDVLRKIMIPIEAALSSLSMFPLLLKVHGGQLQVSIASFKCRLYSLLVNLQPTFFEGSFTPLIRDLVGEFTMADRKGAVTTSLLQKLCHKDDSILLGSWMQDTDHKDVEEQLQVNSASGSGAFEHDSSCIYGKYE-DHNVPGPLPLGVAVIDAAISLFGHIFPCVSNKHRGQLMSHFNECIVKNKGVRQQAIQTNIFTAFLAALKNLAENKSLFGENTVRMHASSLVQEALANTDNILRCAAGEALGRMAQVMNDTNFVAQMAQTSFEKCQKTPDAVIRTGHALALGCLHRYVGGMGSGHHLTNSVSILMALAKDPSSSLVQIWSLHGLTQIADSGGPMFRTYVDQTLYTVTNLLLQTPPSLTEVHQCLGKCVGALITAIGPEFQDTSKTVARFRLFCLASCSIMQKHPDSLVRSEAIRCLQQLHMFAPNVVNLNILIPHLCHQLLSPHLILRKSSVECLRQLAHREAKDICDLGRKIINDNEEVVKKMYASN-------------------------RGLEGLLFSLLDAETDPNMLKHIRETITSMLQALADGDLKHWLGLCKQVLLASN-------VXXXXXXXXXXXXXXXXXXXAVVLSKKADDKLVITPKWPTRVFAMECIRMILQVCK-SHQEHVDLALARKMKEENSSAEYLVTQLTELVRIAFIAGTSSNDLLKLEGMKTLQDVVMLFAKSPDPDISGHLILEQFQAQVGTALRPAFADNIPPDVTAMACEVCSSWIGCGISRDINDVKRIQQLLVHSLEKIGTSQEDEQHAVKREYSESSYTLETLAVLKAWAQIYIAAVKHGKEEEQNRKAPLRADEDD----DEVDALSIXXXXXXXNLMEVIIKDINQLVKYWLGVARDYAVLTLPKQYSSQIPNNTGNFFSTETSSMVRPHYKQSWPPMVHAISLWLSSVAFIDEEKTKIGAVDECRMKVSMDSNME---------KEFNEINNDRFDLISGICVEAMCSPLSSYPDGTMEACICSMVALLHSPYGRSRVASNKQLAIELLIVSHRLLLTSESTIVQKNILEIIEKCAIAFHEKIQK-----SEDG---------GQGTIESEIVAKKSVVFSLLEVCTFLVSKYAKDLVISSGLSTGNVSRKPAFTCDSMKLMATILSILAYIPNLCTPSASLVCLPTVMFLSTTVLKYIATNVNDDFIEIDQLKETFGQICKSFKIIITSKHTKDETS-SKGWCSLIQSAMLAILQVPTICPDYSSVSGPHSPVLVLWENILMLLSIFIFQSPVECISKTNLLXSIFILQTPVECISKTNLLTDAIQRFVAVIKNGHHKLRLSSFKCLESLMKSEERSISRPFIVSCVPEIVALLEDAQVNKVNTEIELLNYKESITVLELTLSLMTE-GLDSMMAVYITTLVNLLYDSNTLGKANSFSRALHEHCIQRLTATGPLYPDAFKACMTRSPELKVKLTEGIK-----ASSAIRKAPAKSVAAAQPQIKLKMNF 6184
L E ++ Q + ++ V++++WL L + L A+ ++K Q K+V L L+ + P TR+ L K A L+++G T +F+T++K DII+ +DD+ +++ KL+A+ CVG Y+ +GRM+G+ F + +L+K L E Q + EIL+ +QK+L GL AA+ ++D+YK + L D++M+VR A AKC LEL A FM T +LE++ ++C KAL+NSNY VRV VS+LLG +MA + P T VK+ + +++ LMA GFL+GG GFLKSG EM + +RE+RVGVTQAYVVF +G +W+ + + + H+L+L + ++ TH++AVY+R+CVSFIL + + ++L E++QI A KE+C+ I KQM + E + + + + + ++ +QHV+VCAL+ELG+LV L ++ E + E V S L+HPS A +L+AAWC+R A+ALP +T +D C +++N+LK+SPEAV+GY + +AA++GG+H+CPLGIP K + + + ++L + +RLS+ + + GW+LLGA+ T+GPS V+ L KM+ LW +VFP +++AEK RG TWQ TLE RAGALC++ SFV +C LL DV+RK+M PIE A++ +S P ++K HG L+ S A + RLY +L L P +EGSF L+R+LV EFT+ D TTSLL+ LCH DDS+LLGSW+Q+TDHK +E+QLQ NSASGSGA EHD S IY + VPGPLPLGV+VIDA+++LFG +FP VS KHR Q++ HF EC+ + KGVRQQA+Q NIFTA L+ALK LAENKS G VR A +LV L N + ILRCAAGEALGRMAQV+ + F+A+MAQ SF+K + D V RTGH+LALGCLHRYVGG+GSG HL SVSIL+ALA+D +S VQ WSLH L I DS GPM+R YV+ TL V LLL PPS TEVHQCLG+C+GA+IT +GPE Q T + R CL C+I Q H DSLV++ AI CLQQLHMFAP VNL+ L+P LC L S HL+LR+++V CLRQLA REA ++C+ + + + K+ ++N GLEGLLF +LD ETD + I +T+ ML +LA L HWL LCK VL AS+ + E DD+ L ++ K + P+W TRVFA +C+ I+ +C+ + Q H DLALAR K N + + LV L++L+R+AF+A T ++ L++ G++ L+D++ FA P+P+ GH+ILEQ+QA VG ALRPAF+ + P D+ A AC+VCS+WIG G+ D+ND++R+ LLV SL+K+ + Y ES+ T+E LAVLKAWA++Y+ A+ KE E K ++ +DD +D L +L+ ++ ++ L + WL +DYA+LTLP ++SSQ+P + G F++ ET R HY+ SW P++HA++LWL+S F E T+ A+ + K S N+ K EIN DR LI G+ ++ +CSP P + AC+ ++ LL SPY R +A ++ + +ELL V HRLLLT + VQ + ++++ A + +Q+ +ED G+G ++ KS+VF+ +E+ F++ ++ L S +++ K + +S +L+A ++IL+ +P+LC+P+ + LPT++FL +LK A D +Q+ + K I+T K E K W +LI+S + IL+ P+ SV P + + ML +I ++F+ E I +L + RF + + ++ ++ L S+ + R++S P+I S P +V L+ + N+ + IELL +E I VLE ++L E ++A+ + TL++ L D N+ A+S S+ LHE +Q L GPLYP AFK M +PELKV+L ++ + A + PA ++ +A P IKLK +F
Sbjct: 8 LLNEEALAQITEAKRPVFIFEWLRFLDKVLVA--ANKTDVKEKQKKLVEQLTGLISSSPGPPTRKLLAKNLAALYSIGDTFTVFQTLDKCNDIIRNKDDTAAYLPTKLAAVACVGAFYEKMGRMLGSAFPETVNNLLKSLKSAESQGRSEILMSLQKVLSGLGGAAASSHRDIYKNARSLLTDRSMAVRCAVAKCLLELQNEAVFMWTAELENIATLCFKALENSNYGVRVAVSKLLGTVMATALMPKQATVMRQNVKRATFDEVLELMATGFLRGGSGFLKSGGEMLKVGGSVNREVRVGVTQAYVVFVTTLGGQWLERSFATFLSHVLDLVSHPRATQTHVEAVYSRRCVSFILRATVGSLLGEKAQIAAAKEICQAIGKQMKAV-EAVVNDTSGENKSGAADIAASQHVMVCALQELGSLVQSLNATASPLIQEASIGLLEIVTSVLLHPSMAARLAAAWCLRCVAVALPFQLTPFLDRCAERLNNLKTSPEAVSGYSFAMAALLGGVHQCPLGIPHAKGKMVVSIAEDLLRTAAQNSRLSLQRTQAGWLLLGALMTLGPSVVRYHLPKMLLLWRNVFPRSLKELEAEKARGDSFTWQVTLEGRAGALCAMRSFVAHCPELLTEDVIRKLMTPIECAMTMMSHIPSVMKAHGAHLKASAAMVRLRLYDILALLPPKTYEGSFNALLRELVAEFTLTDNSANTTTSLLRSLCHYDDSVLLGSWLQETDHKSIEDQLQPNSASGSGALEHDPSSIYLRIPAGEAVPGPLPLGVSVIDASVALFGVVFPHVSYKHRLQMLDHFAECVKQAKGVRQQAVQLNIFTAVLSALKGLAENKSTLGPEEVRKSALTLVMGPLDNPNPILRCAAGEALGRMAQVVGEATFIARMAQYSFDKLKSARDVVSRTGHSLALGCLHRYVGGIGSGQHLKTSVSILLALAQDGTSPEVQTWSLHSLALIVDSSGPMYRGYVEPTLSLVLTLLLTVPPSHTEVHQCLGRCLGAIITTVGPELQGNGATTSTIRSSCLVGCAITQDHSDSLVQAAAISCLQQLHMFAPRHVNLSSLVPSLCVHLCSSHLLLRRAAVACLRQLAQREAAEVCEYAMSLAKNTGD--KESSSANVSPFAPGVSSRTDIHCRHQGVNITETGLEGLLFGMLDRETDRKLCSDIHDTLGHMLSSLAVEKLSHWLMLCKDVLAASSDMSTATLLSSGKDEEAEKKDEMDDDTMFTTLGEEDKSKPFVAPRWATRVFAADCLCRIINLCENADQAHFDLALARSAKLRNPTNDLLVLHLSDLIRMAFMAATDHSNQLRMAGLQALEDIIKKFASVPEPEFPGHVILEQYQANVGAALRPAFSQDTPSDIIAKACQVCSTWIGSGVVSDLNDLRRVHNLLVSSLDKVQAGKGSSSQL----YRESATTMEKLAVLKAWAEVYVVAMNIKKEAESKPKRAIKNTDDDDDDCGTIDELP------PDSLITLVQPELPTLSRLWLAALKDYALLTLPAEFSSQLPPDGGAFYTPETIDTARLHYRNSWAPILHAVALWLNSTGFTCSESTEAAAISGLQ-KRSTSVNLNQASGAVGSAKSLPEINKDRMHLILGVSIQFLCSPRPEEPIEHVTACLQALHTLLDSPYARVHIAEDQLIGVELLSVLHRLLLTWNPSSVQLLVTGVVQQIVRAAQDYLQEKRNTLNEDDMEKEACTVLGEGGDSGGLIPGKSLVFATMELLMFILVRHMPHLSTKVSDSPSHIATKTRLSEESARLVAATVTILSDLPSLCSPAGCMTILPTILFLIARILKDTAIKSAD-----NQVPPPVSAALQGIKSIVTLSMAKTEAGVQKQWTALIRSTLACILEYSQ--PE-DSVPTP--------DEVSMLTAI-----------------ALFLWSASNEIIGVQSLQNGCMNRFKNALNSCDPWVQAKCYQLLLSVFQHSNRALSTPYIHSLAPIVVEKLKAVERNRPASNIELLAVQEGIKVLETLVALGEEQNRVQLLALLVPTLISYLLDENSFASASSASKDLHEFALQNLMHIGPLYPHAFKTVMGAAPELKVRLETAVRASQASKAKAAARQPAPAIHSA-PTIKLKTSF 2070 The following BLAST results are available for this feature:
BLAST of TCONS_00072692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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