TCONS_00072691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072691
Unique NameTCONS_00072691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2166

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072691 ID=TCONS_00072691|Name=TCONS_00072691|organism=Clytia hemisphaerica|type=transcript|length=2166bp
tttttaatctgaagATCCAATTCAATCAAGAtggaattttaagattttat
ggCTTTTGGGCAAAATTTACCATCAAATTGGTAAAAAGCaacaatcttca
aaatttataCAAGATGTGAAAAGATTGTTCCAATAACAGAAatacttttt
atcaaaaaatggtGAGTGGAAGTATCGACAAAAAGGACTTTTTTGGTGAC
GAAAAAGTCATCGAAAGTGGGAAACCAGAGCCTGTAaaaccaaaaaaaga
tattgaaaaGCTTGAAAAACATGAGAAATGGTATATCAGATTGAAAAGCA
AGTTAAAATCACCTTTACAATTGACACTATGGATTCTTTCTTACTTTGCA
TTTTTATTCGTCGGTGGTTTGTGAATCAAATTGATCGAGGAAGATAACGA
CCGTACACTCAAGAACTCGCGACGTGAAAATTTGTTAGCAGTCTTAAACA
AATATAACTTCACTGCCAACAATACAATGATCAAAGACATTATAAAGGCA
GCAATGAAGGTTTATTCTGTGAAAGGACTTTATGTTGATAATTTAGAAGC
AGAAGTAGAATCAACCTGGACCTTTTCAGGTGGTCTTTTCTTCACCGCAA
CCCTGGTCACCACTATTGGTTATGGCGATCGGTATCCATTGACAACAGGG
GGCCGTTGGTTTACCATTGTCTATGCTCTCTTTGGAATCCCGCTCACTGG
TGTCATTCTCACAAAGATTGGTTTCAGATTGACCAAACTTGTCAAGAAAA
TGGATAATTTACTCACAAAACCAATCAAGAAAACTCTCGgtGTTTTGGCA
GCAGAGTCAGAGAATCGAATAAAGTTTTACGTTCGAATTATTCAACTGTT
GATTGTGgttgctttgtttttgttgttgttttggatAATCCCTGCTATCA
TCATGGTCGAAATTGAAGAGGAATGGGATCTAATCACTGCCATTTATTTC
TGCTTCATCACCATAACAACCGTGGGACTGGGAGATATAACACCAGGGAC
GTCAGACGTGAGCGTGGAATTGGGAGATGAAGCATTCAGTGCCAGTAATA
TGAAAGCAGCAGCGTTACAGGTATCAACGCTACTTTACTTCTTACTCGGC
TTGTCAGCGTTGACCATTATTCTCGGTCTCGTCACCTCCATGTTACATCA
TTTAGCTGATCAAGCCAAGTCAAAAGCGGAACAAGGCATGAACATGCTTG
GAAATGTTCGTCAAAGCGTGATGGATAAAACAAGACGTTTAACAGGTGCA
CCCCCCTCACCTCAGAAAAAGTCGGTAACAGAAAAATCACCTGAACTAGC
CTCAGTTCCTGAAGAACATGAAACAGATGGTATAGATCAAGCACCTGAAC
TGTCCATGGATGCTTTATTAGCAACAGAATCAGAGGCTAGTGAGAGCCTT
TTCAACTTAGGCTATGATGATGACGAAACCAAAAGCGATAAAGCTGGAAG
TCCTGTCAAAGTCAATCAGAAGCATAAAGAAAGAACTGACTCCAAAACCA
GTTTAATCGGGCAAGAAAATCATTTACCTAATATTGTGTAAAGAAGATCG
AACATTCATAAATTTtcgctcaaaatattttttattaaatattttgggTA
AACAAGAAAAGCAATTTATTTTCTAATCGTAAACGCATTTGTAAATAGTT
GATCCATATAAATGCAAAATTTCGCATTTCAAAATACATTTATATTCATT
TTGCATTAAAACAAactaatattttaaaaaacacaacaaaattgATTATA
CAAATTTGCATGATCCTTTTTGAAAAGGCTAGAAAACCACGGGAATAAGA
TAGTTTGTCTTTTGGTTTAGGAATGTAAATCTGAAAATTCTcgtttttag
aaatttagaaaaagctGAATTTTTGATTGACACGGGGACTAATATGTTAC
TATCATTactaataaataaaaataacaacacCCTAAAAACCACTGATAAT
ATCTACAATTTTTCAAGCCAAGTACGAACGCCATCGACTTTTACTTCTCC
CTCAACTTGTGTGTTCTTCAAATTACATTCGCAAAACTCAACTTTGATTG
GATTGACATGCGAGAATTCAAAGTCTTTCCCTTGCTTACCGATGAAAGCA
TTTCTACTGGATGAATAATCGTCAATTCCAAGTAAAGCTGCCGAACGAGT
TTGCCGAAGTTTGTtt
Run BLAST on NCBI

protein sequence of TCONS_00072691-protein

>TCONS_00072691-protein ID=TCONS_00072691-protein|Name=TCONS_00072691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MIKDIIKAAMKVYSVKGLYVDNLEAEVESTWTFSGGLFFTATLVTTIGYG
DRYPLTTGGRWFTIVYALFGIPLTGVILTKIGFRLTKLVKKMDNLLTKPI
KKTLGVLAAESENRIKFYVRIIQLLIVVALFLLLFWIIPAIIMVEIEEEW
DLITAIYFCFITITTVGLGDITPGTSDVSVELGDEAFSASNMKAAALQVS
TLLYFLLGLSALTIILGLVTSMLHHLADQAKSKAEQGMNMLGNVRQSVMD
KTRRLTGAPPSPQKKSVTEKSPELASVPEEHETDGIDQAPELSMDALLAT
ESEASESLFNLGYDDDETKSDKAGSPVKVNQKHKERTDSKTSLIGQENHL
PNIV
Run BLAST on NCBI

transcript from alignment at scaffold_82:252247..256479+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072691 ID=TCONS_00072691|Name=TCONS_00072691|organism=Clytia hemisphaerica|type=transcript|length=4233bp|location=Sequence derived from alignment at scaffold_82:252247..256479+ (Clytia hemisphaerica)
tttttaatctgaagATCCAATTCAATCAAGAtggaattttaagattttat
ggCTTTTGGGCAAAATTTACCATCAAATTGGTAAAAAGCaacaatcttca
aaatttataCAAGATGTGAAAAGATTGTTCCAATAACAGAAatacttttt
atcaaaaaatggtGAGTGGAAGTATCGACAAAAAGGACTTTTTTGGTGAC
GAAAAAGTCATCGAAAGTGGGAAACCAGAGCCTGTAaaaccaaaaaaaga
tattgaaaaGCTTGAAAAACATGAGAAATGGTATATCAGATTGAAAAGCA
AGTTAAAATCACCTTTACAATTGACACTATGGATTCTTTCTTACTTTGCA
TTTTTATTCGTCGGTGGTTTGTGAATCAAATTGATCGAGGAAGATAACGA
CCGTACACTCAAGAACTCGCGACGTGAAAATTTGTTAGCAGTCTTAAACA
AATATAACTTCACTGCCAACAATACAATGATCAAAGACATTATAAAGGCA
GCAATGAAGGTTTATTCTGTGAAAGGACTTTATGTTGATAATTTAGAAGC
AGAAGTAGAATCAACCTGGACCTTTTCAGGTGGTCTTTTCTTCACCGCAA
CCCTGGTCACCACTATTGGTAAGAGTTTCAATTTATTGACTCACTGTTTC
ACTCCTTTGTGATTTTACTATCGCCCTTTCGCACACCCCTCTCTCACAGC
CCCGGTCGAACTCTTTTCCTCAATNTGCCCTTTcgcacacccctgtctca
cagccccggtcgAACTCTTTTCCTCAATGGGaataaaattcctattgaaa
ttccaattctattgttctattcCAAGATTaaaacccagtggggatggttt
tagagtgcaacttaaacattaaatttcgagtggagatgaaatcaaagtta
attttccagtggggctgaaattccagggtattttcccaccgggaacAAAA
TTTTCGCTAACTTTTCCAGTGGGTTTGTGACACAAGGGTGTATAAACACT
CGGTTTTTCATTTAACTGAGagtttttcaatttattgacTCACAGTCTCA
CTCCTTTGTGATTTTACTTCATTTAACTGGCCTGTCTCGATTGTTTTTTC
ATGATTACTATCTACGTTTAAAGAGCTTCTCTCTTTCattcattaatttt
ttactGACCCCGTACTGAAGAACCGAAGCTGCAATCACATTTTCAGGTCT
GTTCAAAGAACATGTATCTCACTGAGCCGTCtgaatgaatttgaaaaaat
tgaacaacaaGATTCAACCACACTTAAAATTGCAGTATCTTACTAAATCT
GCCCATTTCTTTATGAGTGACACAATTTACGGATCAGGGATGGGGTTGCT
TAAGCATTCTAagtcatttttgagaaatttgctttgaccacccctgatat
tataccatatttatatTTGCTTCAAGTGCTGTCGTTTGCCAtgcttagat
tatctaaaaagctttacTATACAAGATAGTGAAAGAAATTTGGCTTGAGC
CTTAACAGCCTGTTTGGTTATATGAAAATGTATATTGTTTAATATTTTCT
CAATGGTCATAGGTTATGGCGATCGGTATCCATTGACAACAGGGGGCCGT
TGGTTTACCATTGTCTATGCTCTCTTTGGAATCCCGCTCACTGGTGTCAT
TCTCACAAAGATTGGTTTCAGATTGACCAAACTTGTCAAGAAAATGGATA
ATTTACTCACAAAACCAATCAAGAAAACTCTCGGTTAGTAGTATgctttt
catatttcaaaagttctttCAGGCTAACATTAATCCACTCGAAGTTATCT
TTCAAAACTCTATAGAAAATTAAGTATTGCAATAAAGATTTGAATTGATA
AATTGAATCATCTTTAGTTACGAAagtgtttcttaaaatttttaaggtGT
TTTGGCAGCAGAGTCAGAGAATCGAATAAAGTTTTACGTTCGAATTATTC
AACTGTTGATTGTGgttgctttgtttttgttgttgttttggatAATCCCT
GCTATCATCATGGTCGAAATTGAAGAGGAATGGGATCTAATCACTGCCAT
TTATTTCTGCTTCATCACCATAACAACCGTGGGACTGGGTAAGAGTCAAC
CCATTTCAAATACCCAGGACAACAACAATATCAATACCCAGCTCCGAGTA
ATTTCTCCTGTCAAATAGTGAATAAGACTAAAAAGAATTGTTTATTTCAT
TCAACGATCTTACAAAATTTAATCAAAactatgtgccgcccttaagggta
ctttttttggacttccaaagccCCGCTAAAGGtcgaaaaaataggaaaat
ttcaactttttaacccctgaaagatcgaaatttggtcaaaattggtcaaa
tttgtcccgctaagggtcgtgaAATccccaaaaattttcattagttttct
cctttttagtcccggtaagggtcctcCAAAGTTCGAATGTacccccccgt
cagctcacaACACTAGTACCCCCGGGGTTTCAATGTTGACATGTTGTACT
ATTTGCAGGAGATATAACACCAGGGACGTCAGACGTGAGCGTGGAATTGG
GAGATGAAGCATTCAGTGCCAGTAATATGAAAGCAGCAGCGTTACAGGTA
GGGATTATTACTTTCATGTCAGAAATTaaagtactttaatgggataaact
ttcgtggggattaaatttcgcggtcgggcctatccgcgaaattcaaaaat
ttcgaagggacttaatttttgaaatacgcattatttgcgcttctttgatg
caagtagccattgaaatagtatttatttgatatattttgagttttgttta
gaaatatttcgcggataagaaccttccaaatttaatccccgcgaaagttt
atcccattaaagtaatcaATTGTGAATATTCTTCAAAAAGCTCTATACAT
GACTCTTTGATAAGGTTGTACTAATACCTATTGAGTTTCAATTAAATAGC
GTTCAGTACTAGTTTCTTCAGTTTCTGCTCAAAAATCCGCTTCAACATta
tacatttttcttttaaccTTATATTTAGTTGTTAATATTCCAGGCGGGTC
GAAGTTACAAATTTTTGAGACCCGGGTGTAATAGTCTACCCATAGTTTTT
CCATGATTGAATAccattttttctaatttcatcACAGGTATCAACGCTAC
TTTACTTCTTACTCGGCTTGTCAGCGTTGACCATTATTCTCGGTCTCGTC
ACCTCCATGTTACATCATTTAGCTGATCAAGCCAAGTCAAAAGCGGAACA
AGGCATGAACATGCTTGGAAATGTTCGTCAAAGCGTGATGGATAAAACAA
GACGTTTAACAGGTGCACCCCCCTCACCTCAGAAAAAGTCGGTAACAGAA
AAATCACCTGAACTAGCCTCAGTTCCTGAAGAACATGAAACAGATGGTAT
AGATCAAGCACCTGAACTGTCCATGGATGCTTTATTAGCAACAGAATCAG
AGGCTAGTGAGAGCCTTTTCAACTTAGGCTATGATGATGACGAAACCAAA
AGCGATAAAGCTGGAAGTCCTGTCAAAGTCAATCAGAAGCATAAAGAAAG
AACTGACTCCAAAACCAGTTTAATCGGGCAAGAAAATCATTTACCTAATA
TTGTGTAAAGAAGATCGAACATTCATAAATTTtcgctcaaaatatttttt
attaaatattttgggTAAACAAGAAAAGCAATTTATTTTCTAATCGTAAA
CGCATTTGTAAATAGTTGATCCATATAAATGCAAAATTTCGCATTTCAAA
ATACATTTATATTCATTTTGCATTAAAACAAactaatattttaaaaaaca
caacaaaattgATTATACAAATTTGCATGATCCTTTTTGAAAAGGCTAGA
AAACCACGGGAATAAGATAGTTTGTCTTTTGGTTTAGGAATGTAAATCTG
AAAATTCTcgtttttagaaatttagaaaaagctGAATTTTTGATTGACAC
GGGGACTAATATGTTACTATCATTactaataaataaaaataacaacacCC
TAAAAACCACTGATAATATCTACAATTTTTCAAGCCAAGTACGAACGCCA
TCGACTTTTACTTCTCCCTCAACTTGTGTGTTCTTCAAATTACATTCGCA
AAACTCAACTTTGATTGGATTGACATGCGAGAATTCAAAGTCTTTCCCTT
GCTTACCGATGAAAGCATTTCTACTGGATGAATAATCGTCAATTCCAAGT
AAAGCTGCCGAACGAGTTTGCCGAAGTTTGTtt

Coding sequence (CDS) from alignment at scaffold_82:252247..256479+

>TCONS_00072691 ID=TCONS_00072691|Name=TCONS_00072691|organism=Clytia hemisphaerica|type=CDS|length=5325bp|location=Sequence derived from alignment at scaffold_82:252247..256479+ (Clytia hemisphaerica)
ATGATCAAAGACATTATAAAGGCAGCAATGAAGGTTTATTCTGTGAAAGG
ACTTTATGTTGATAATTTAGAAGCAGAAGTAGAATCAACCTGGACCTTTT
CAGGTGGTCTTTTCTTCACCGCAACCCTGGTCACCACTATTGGTTATGGC
GATCGGTATCCATTGACAACAGGGGGCCGTTGGTTTACCATTGTCTATGC
TCTCTTTGGAATCCCGCTCACTGGTGTCATTCTCACAAAGATTGGTTTCA
GATTGACCAAACTTGTCAAGAAAATGGATAATTTACTCACAAAACCAATC
AAGAAAACTCTCGgtGTTTTGGCAGCAGAGTCAGAGAATCGAATAAAGTT
TTACGTTCGAATTATTCAACTGTTGATTGTGgttgctttgtttttgttgt
tgttttggatAATCCCTGCTATCATCATGGTCGAAATTGAAGAGGAATGG
GATCTAATCACTGCCATTTATTTCTGCTTCATCACCATAACAACCGTGGG
ACTGGGAGATATAACACCAGGGACGTCAGACGTGAGCGTGGAATTGGGAG
ATGAAGCATTCAGTGCCAGTAATATGAAAGCAGCAGCGTTACAGGTATCA
ACGCTACTTTACTTCTTACTCGGCTTGTCAGCGTTGACCATTATTCTCGG
TCTCGTCACCTCCATGTTACATCATTTAGCTGATCAAGCCAAGTCAAAAG
CGGAACAAGGCATGAACATGCTTGGAAATGTTCGTCAAAGCGTGATGGAT
AAAACAAGACGTTTAACAGGTGCACCCCCCTCACCTCAGAAAAAGTCGGT
AACAGAAAAATCACCTGAACTAGCCTCAGTTCCTGAAGAACATGAAACAG
ATGGTATAGATCAAGCACCTGAACTGTCCATGGATGCTTTATTAGCAACA
GAATCAGAGGCTAGTGAGAGCCTTTTCAACTTAGGCTATGATGATGACGA
AACCAAAAGCGATAAAGCTGGAAGTCCTGTCAAAGTCAATCAGAAGCATA
AAGAAAGAACTGACTCCAAAACCAGTTTAATCGGGCAAGAAAATCATTTA
CCTAATATTGTGTAAATGATCAAAGACATTATAAAGGCAGCAATGAAGGT
TTATTCTGTGAAAGGACTTTATGTTGATAATTTAGAAGCAGAAGTAGAAT
CAACCTGGACCTTTTCAGGTGGTCTTTTCTTCACCGCAACCCTGGTCACC
ACTATTGGTTATGGCGATCGGTATCCATTGACAACAGGGGGCCGTTGGTT
TACCATTGTCTATGCTCTCTTTGGAATCCCGCTCACTGGTGTCATTCTCA
CAAAGATTGGTTTCAGATTGACCAAACTTGTCAAGAAAATGGATAATTTA
CTCACAAAACCAATCAAGAAAACTCTCGgtGTTTTGGCAGCAGAGTCAGA
GAATCGAATAAAGTTTTACGTTCGAATTATTCAACTGTTGATTGTGgttg
ctttgtttttgttgttgttttggatAATCCCTGCTATCATCATGGTCGAA
ATTGAAGAGGAATGGGATCTAATCACTGCCATTTATTTCTGCTTCATCAC
CATAACAACCGTGGGACTGGGAGATATAACACCAGGGACGTCAGACGTGA
GCGTGGAATTGGGAGATGAAGCATTCAGTGCCAGTAATATGAAAGCAGCA
GCGTTACAGGTATCAACGCTACTTTACTTCTTACTCGGCTTGTCAGCGTT
GACCATTATTCTCGGTCTCGTCACCTCCATGTTACATCATTTAGCTGATC
AAGCCAAGTCAAAAGCGGAACAAGGCATGAACATGCTTGGAAATGTTCGT
CAAAGCGTGATGGATAAAACAAGACGTTTAACAGGTGCACCCCCCTCACC
TCAGAAAAAGTCGGTAACAGAAAAATCACCTGAACTAGCCTCAGTTCCTG
AAGAACATGAAACAGATGGTATAGATCAAGCACCTGAACTGTCCATGGAT
GCTTTATTAGCAACAGAATCAGAGGCTAGTGAGAGCCTTTTCAACTTAGG
CTATGATGATGACGAAACCAAAAGCGATAAAGCTGGAAGTCCTGTCAAAG
TCAATCAGAAGCATAAAGAAAGAACTGACTCCAAAACCAGTTTAATCGGG
CAAGAAAATCATTTACCTAATATTGTGTAAATGATCAAAGACATTATAAA
GGCAGCAATGAAGGTTTATTCTGTGAAAGGACTTTATGTTGATAATTTAG
AAGCAGAAGTAGAATCAACCTGGACCTTTTCAGGTGGTCTTTTCTTCACC
GCAACCCTGGTCACCACTATTGGTTATGGCGATCGGTATCCATTGACAAC
AGGGGGCCGTTGGTTTACCATTGTCTATGCTCTCTTTGGAATCCCGCTCA
CTGGTGTCATTCTCACAAAGATTGGTTTCAGATTGACCAAACTTGTCAAG
AAAATGGATAATTTACTCACAAAACCAATCAAGAAAACTCTCGgtGTTTT
GGCAGCAGAGTCAGAGAATCGAATAAAGTTTTACGTTCGAATTATTCAAC
TGTTGATTGTGgttgctttgtttttgttgttgttttggatAATCCCTGCT
ATCATCATGGTCGAAATTGAAGAGGAATGGGATCTAATCACTGCCATTTA
TTTCTGCTTCATCACCATAACAACCGTGGGACTGGGAGATATAACACCAG
GGACGTCAGACGTGAGCGTGGAATTGGGAGATGAAGCATTCAGTGCCAGT
AATATGAAAGCAGCAGCGTTACAGGTATCAACGCTACTTTACTTCTTACT
CGGCTTGTCAGCGTTGACCATTATTCTCGGTCTCGTCACCTCCATGTTAC
ATCATTTAGCTGATCAAGCCAAGTCAAAAGCGGAACAAGGCATGAACATG
CTTGGAAATGTTCGTCAAAGCGTGATGGATAAAACAAGACGTTTAACAGG
TGCACCCCCCTCACCTCAGAAAAAGTCGGTAACAGAAAAATCACCTGAAC
TAGCCTCAGTTCCTGAAGAACATGAAACAGATGGTATAGATCAAGCACCT
GAACTGTCCATGGATGCTTTATTAGCAACAGAATCAGAGGCTAGTGAGAG
CCTTTTCAACTTAGGCTATGATGATGACGAAACCAAAAGCGATAAAGCTG
GAAGTCCTGTCAAAGTCAATCAGAAGCATAAAGAAAGAACTGACTCCAAA
ACCAGTTTAATCGGGCAAGAAAATCATTTACCTAATATTGTGTAAATGAT
CAAAGACATTATAAAGGCAGCAATGAAGGTTTATTCTGTGAAAGGACTTT
ATGTTGATAATTTAGAAGCAGAAGTAGAATCAACCTGGACCTTTTCAGGT
GGTCTTTTCTTCACCGCAACCCTGGTCACCACTATTGGTTATGGCGATCG
GTATCCATTGACAACAGGGGGCCGTTGGTTTACCATTGTCTATGCTCTCT
TTGGAATCCCGCTCACTGGTGTCATTCTCACAAAGATTGGTTTCAGATTG
ACCAAACTTGTCAAGAAAATGGATAATTTACTCACAAAACCAATCAAGAA
AACTCTCGgtGTTTTGGCAGCAGAGTCAGAGAATCGAATAAAGTTTTACG
TTCGAATTATTCAACTGTTGATTGTGgttgctttgtttttgttgttgttt
tggatAATCCCTGCTATCATCATGGTCGAAATTGAAGAGGAATGGGATCT
AATCACTGCCATTTATTTCTGCTTCATCACCATAACAACCGTGGGACTGG
GAGATATAACACCAGGGACGTCAGACGTGAGCGTGGAATTGGGAGATGAA
GCATTCAGTGCCAGTAATATGAAAGCAGCAGCGTTACAGGTATCAACGCT
ACTTTACTTCTTACTCGGCTTGTCAGCGTTGACCATTATTCTCGGTCTCG
TCACCTCCATGTTACATCATTTAGCTGATCAAGCCAAGTCAAAAGCGGAA
CAAGGCATGAACATGCTTGGAAATGTTCGTCAAAGCGTGATGGATAAAAC
AAGACGTTTAACAGGTGCACCCCCCTCACCTCAGAAAAAGTCGGTAACAG
AAAAATCACCTGAACTAGCCTCAGTTCCTGAAGAACATGAAACAGATGGT
ATAGATCAAGCACCTGAACTGTCCATGGATGCTTTATTAGCAACAGAATC
AGAGGCTAGTGAGAGCCTTTTCAACTTAGGCTATGATGATGACGAAACCA
AAAGCGATAAAGCTGGAAGTCCTGTCAAAGTCAATCAGAAGCATAAAGAA
AGAACTGACTCCAAAACCAGTTTAATCGGGCAAGAAAATCATTTACCTAA
TATTGTGTAAATGATCAAAGACATTATAAAGGCAGCAATGAAGGTTTATT
CTGTGAAAGGACTTTATGTTGATAATTTAGAAGCAGAAGTAGAATCAACC
TGGACCTTTTCAGGTGGTCTTTTCTTCACCGCAACCCTGGTCACCACTAT
TGGTTATGGCGATCGGTATCCATTGACAACAGGGGGCCGTTGGTTTACCA
TTGTCTATGCTCTCTTTGGAATCCCGCTCACTGGTGTCATTCTCACAAAG
ATTGGTTTCAGATTGACCAAACTTGTCAAGAAAATGGATAATTTACTCAC
AAAACCAATCAAGAAAACTCTCGgtGTTTTGGCAGCAGAGTCAGAGAATC
GAATAAAGTTTTACGTTCGAATTATTCAACTGTTGATTGTGgttgctttg
tttttgttgttgttttggatAATCCCTGCTATCATCATGGTCGAAATTGA
AGAGGAATGGGATCTAATCACTGCCATTTATTTCTGCTTCATCACCATAA
CAACCGTGGGACTGGGAGATATAACACCAGGGACGTCAGACGTGAGCGTG
GAATTGGGAGATGAAGCATTCAGTGCCAGTAATATGAAAGCAGCAGCGTT
ACAGGTATCAACGCTACTTTACTTCTTACTCGGCTTGTCAGCGTTGACCA
TTATTCTCGGTCTCGTCACCTCCATGTTACATCATTTAGCTGATCAAGCC
AAGTCAAAAGCGGAACAAGGCATGAACATGCTTGGAAATGTTCGTCAAAG
CGTGATGGATAAAACAAGACGTTTAACAGGTGCACCCCCCTCACCTCAGA
AAAAGTCGGTAACAGAAAAATCACCTGAACTAGCCTCAGTTCCTGAAGAA
CATGAAACAGATGGTATAGATCAAGCACCTGAACTGTCCATGGATGCTTT
ATTAGCAACAGAATCAGAGGCTAGTGAGAGCCTTTTCAACTTAGGCTATG
ATGATGACGAAACCAAAAGCGATAAAGCTGGAAGTCCTGTCAAAGTCAAT
CAGAAGCATAAAGAAAGAACTGACTCCAAAACCAGTTTAATCGGGCAAGA
AAATCATTTACCTAATATTGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045120XLOC_045120Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072691-exon-scaffold_82-1491911889:252247..252864TCONS_00072691-exon-scaffold_82-1491911889:252247..252864Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1510915933:252247..252864TCONS_00072691-exon-scaffold_82-1510915933:252247..252864Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1575043694:252247..252864TCONS_00072691-exon-scaffold_82-1575043694:252247..252864Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1491911889:253809..253979TCONS_00072691-exon-scaffold_82-1491911889:253809..253979Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1510915933:253809..253979TCONS_00072691-exon-scaffold_82-1510915933:253809..253979Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1575043694:253809..253979TCONS_00072691-exon-scaffold_82-1575043694:253809..253979Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1491911889:254143..254334TCONS_00072691-exon-scaffold_82-1491911889:254143..254334Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1510915933:254143..254334TCONS_00072691-exon-scaffold_82-1510915933:254143..254334Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1575043694:254143..254334TCONS_00072691-exon-scaffold_82-1575043694:254143..254334Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1491911889:254755..254843TCONS_00072691-exon-scaffold_82-1491911889:254755..254843Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1510915933:254755..254843TCONS_00072691-exon-scaffold_82-1510915933:254755..254843Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1575043694:254755..254843TCONS_00072691-exon-scaffold_82-1575043694:254755..254843Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1491911889:255384..256479TCONS_00072691-exon-scaffold_82-1491911889:255384..256479Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1510915933:255384..256479TCONS_00072691-exon-scaffold_82-1510915933:255384..256479Clytia hemisphaericaexon
TCONS_00072691-exon-scaffold_82-1575043694:255384..256479TCONS_00072691-exon-scaffold_82-1575043694:255384..256479Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072691-proteinTCONS_00072691-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:252247..256479 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.107725	0.125281	0.0239402	0.0237193	0.202737	0.0910256	0.1388	0.0514417	0.614351	0.26073	0.594531	0.717709	6.953	6.61376	0.578011	0.700672	0.317246	0.567763	15.9413	15.532	2.37997	1.63459	0.855273	1.07522	0.938818	1.21309	0.0589858	0.0953586	0	0.0243648
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0032802pore_dom_K_chnl
IPR013099K_chnl_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005267potassium channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0071805potassium ion transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071805 potassium ion transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005267 potassium channel activity
Blast
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BLAST of TCONS_00072691 vs. Swiss-Prot (Human)
Match: KCNK9 (Potassium channel subfamily K member 9 OS=Homo sapiens GN=KCNK9 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.284e-22
Identity = 94/358 (26.26%), Postives = 155/358 (43.30%), Query Frame = 3 
Query:  333 ILSYFAFLFVGGL*IKLIEEDNDRTLKNSRRENLLAVLNKYNFTANNTMIKDIIKAAMKVYSVKGLYVDNLEAEVESTWTFSGGLFFTATLVTTIGYGDRYPLTTGGRWFTIVYALFGIPLTGVILTKIGFRLTKLVKKMDNLLTKPIKKTLGV----LAAESENRIKFYVRXXXXXXXXXXXXXXXXXXPAIIMVEIEEEWDLITAIYFCFITITTVGLGDITPGTSDVSVELGDEAFSASNMKAAALQVS-TLLYFLLGLSALTIILGLVT-SMLHHLADQAKSKAEQGMNMLGNVRQSVMDKTRRLTGAPPSPQKKSVTEKSPELASVP-----EEHETDGIDQAPELSMDALLA 1373
            I+  F +L VG      +E D++   +   +   + +  KYN ++ +    +++           L  +   A V+  W F+G  +F  T++TTIGYG   P T  G+ F + YA+ GIPLT V+   +G R+   V+     L K IKK  G+    ++ E+   + F+  +  L I  A F                EEW    A Y+CFIT+TT+G GD       V+++      +   ++   L V+ + +Y L+GL+ +   L LV    L   ++  +  AE+  ++ GN    V+          P P +       P+L SV         +  G   AP+ S  A LA
Sbjct:   12 IVCTFTYLLVGAAVFDALESDHEMREEEKLKAEEIRIKGKYNISSEDYRQLELVI----------LQSEPHRAGVQ--WKFAGSFYFAITVITTIGYGHAAPGTDAGKAFCMFYAVLGIPLTLVMFQSLGERMNTFVR----YLLKRIKKCCGMRNTDVSMENMVTVGFFSCMGTLCIGAAAFSQC-------------EEWSFFHAYYYCFITLTTIGFGDY------VALQ------TKGALQKKPLYVAFSFMYILVGLTVIGAFLNLVVLRFLTMNSEDERRDAEERASLAGNRNSMVIHIPEE-----PRPSRPRYKADVPDLQSVCSCTCYRSQDYGGRSVAPQNSFSAKLA 323
The following BLAST results are available for this feature:
BLAST of TCONS_00072691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNK91.284e-2226.26Potassium channel subfamily K member 9 OS=Homo sap... [more]
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