TCONS_00072688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072688
Unique NameTCONS_00072688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072688 ID=TCONS_00072688|Name=TCONS_00072688|organism=Clytia hemisphaerica|type=transcript|length=1338bp
aaactttcaaaaccgcgtaaaatcagaacatttcaactttttcaagtcgg
tgatacttttttttgtcatatttatatttattttttgctgctAATTCTCG
TGTACTAGGTTCCAAATAGACGNtacttttttttgtcatatttatattta
ttttttgctgctAATTCTCCTTTAAGATGAAATAGAAGCaatacaaatga
aatggttCATTAAAGTATACCTGGTAACATGTTATAGTATCCTGGAGTAA
GCACagaaaaaagagcaaaatagcCTGTGCTGCAGTTGTGGGATGGTAGT
GGTCACCGACAAACCTATCATTAGGACTAAAATACTTGAccaatgaaaaa
atagttttaaccaaaacattccccacaaaatttggtgaaaagtcataaaa
tttcagcttcatagcctcactagttaaaaaatgtcggccaattttctaac
aggggggggggcacaaagtgcccccctctcagtaggtagggttgAACAAA
CAGCACAATCTGACTCAGTGGAATGCGTTTCAAATTCTGCAATTGTCTGA
GGTTTTGGGTTTGAGACTCGGTTCAACTGACGAGCCCATTTTGCACATAA
TTTCTTAGGGTGGATAGATAACCAGGCatttgaaatatcatatttaaaCA
ACTTTCTAATTTCCTCTTTGCATTCAAGTGCATATCCTGGCATGGGTGCA
ATGACTTCACCACGACAAAGACGACATATACTAGAAAGTTTTTTAATGTG
GTCATCGGCCATTTTAAACAATTAACTAGATATTTAgggatcaaaaaaaa
tttaattacgGTCTTTTAGTGTGATGTGATATCGAAAGAAACAAGTGCCT
TGAAGTGCCTCGATAAGCTACTgacatgattttttttgtattcGATCGAG
AAAAGGTCAAGAAATACTGGGATGAAGTTTCAAATAATAAATCATAGAAA
TGGCTCCAGAAATTCAACTTCTCTTCTGTTAAGTTCTACAGGTCCTGAGC
TTTTTTTGTGCTGGTGTTTTATGGAGAGAATGTAAAATACCAATTCCTAT
GTCGCCTTATGGCCAAGTACAATCTCAAAGCACTGATCGTCTGGACTGTT
TGACCTCGTGAAAGGGTGACTTATATTGTCTTCTTACAATGTTTTTAACG
AATAACAAGATTTTTTAGTTTAGTCCTGGATTTGTTTCGAGATTTTTAAA
ATTAACCAGGAACTATGAACtattaaacaaaatttttctaaatattatcT
GATGATGTTACAGACTTAATTTGCGAGGGCGAATAAAACGATAATATCTA
GTCGGATAATACTtgatatttttgtctattttttgttG
Run BLAST on NCBI

transcript from alignment at scaffold_82:244023..245360+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072688 ID=TCONS_00072688|Name=TCONS_00072688|organism=Clytia hemisphaerica|type=transcript|length=1338bp|location=Sequence derived from alignment at scaffold_82:244023..245360+ (Clytia hemisphaerica)
aaactttcaaaaccgcgtaaaatcagaacatttcaactttttcaagtcgg tgatacttttttttgtcatatttatatttattttttgctgctAATTCTCG TGTACTAGGTTCCAAATAGACGNtacttttttttgtcatatttatattta ttttttgctgctAATTCTCCTTTAAGATGAAATAGAAGCaatacaaatga aatggttCATTAAAGTATACCTGGTAACATGTTATAGTATCCTGGAGTAA GCACagaaaaaagagcaaaatagcCTGTGCTGCAGTTGTGGGATGGTAGT GGTCACCGACAAACCTATCATTAGGACTAAAATACTTGAccaatgaaaaa atagttttaaccaaaacattccccacaaaatttggtgaaaagtcataaaa tttcagcttcatagcctcactagttaaaaaatgtcggccaattttctaac aggggggggggcacaaagtgcccccctctcagtaggtagggttgAACAAA CAGCACAATCTGACTCAGTGGAATGCGTTTCAAATTCTGCAATTGTCTGA GGTTTTGGGTTTGAGACTCGGTTCAACTGACGAGCCCATTTTGCACATAA TTTCTTAGGGTGGATAGATAACCAGGCatttgaaatatcatatttaaaCA ACTTTCTAATTTCCTCTTTGCATTCAAGTGCATATCCTGGCATGGGTGCA ATGACTTCACCACGACAAAGACGACATATACTAGAAAGTTTTTTAATGTG GTCATCGGCCATTTTAAACAATTAACTAGATATTTAgggatcaaaaaaaa tttaattacgGTCTTTTAGTGTGATGTGATATCGAAAGAAACAAGTGCCT TGAAGTGCCTCGATAAGCTACTgacatgattttttttgtattcGATCGAG AAAAGGTCAAGAAATACTGGGATGAAGTTTCAAATAATAAATCATAGAAA TGGCTCCAGAAATTCAACTTCTCTTCTGTTAAGTTCTACAGGTCCTGAGC TTTTTTTGTGCTGGTGTTTTATGGAGAGAATGTAAAATACCAATTCCTAT GTCGCCTTATGGCCAAGTACAATCTCAAAGCACTGATCGTCTGGACTGTT TGACCTCGTGAAAGGGTGACTTATATTGTCTTCTTACAATGTTTTTAACG AATAACAAGATTTTTTAGTTTAGTCCTGGATTTGTTTCGAGATTTTTAAA ATTAACCAGGAACTATGAACtattaaacaaaatttttctaaatattatcT GATGATGTTACAGACTTAATTTGCGAGGGCGAATAAAACGATAATATCTA GTCGGATAATACTtgatatttttgtctattttttgttG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045118XLOC_045118Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072688-exon-scaffold_82-1491911889:244023..245360TCONS_00072688-exon-scaffold_82-1491911889:244023..245360Clytia hemisphaericaexon
TCONS_00072688-exon-scaffold_82-1510915933:244023..245360TCONS_00072688-exon-scaffold_82-1510915933:244023..245360Clytia hemisphaericaexon
TCONS_00072688-exon-scaffold_82-1575043694:244023..245360TCONS_00072688-exon-scaffold_82-1575043694:244023..245360Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:244023..245360 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.478478 0.391789 0.114317 0.386548 1.46443 1.30222 2.06375 2.24308 3.6936 3.01223 2.60905 3.15934 1.91447 2.8624 1.30724 1.14051 1.28846 1.09595 1.87065 2.16218 2.58252 3.16976 0.849039 1.24624 1.41012 1.50195 2.89589 2.62485 1.11178 1.56888
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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