TCONS_00072682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072682
Unique NameTCONS_00072682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072682 ID=TCONS_00072682|Name=TCONS_00072682|organism=Clytia hemisphaerica|type=transcript|length=358bp
tacaGATTCGTCTAATACGATATTAAAGGGGTGCAGATTTTTATCGTTCT
TATCGTCATTAGCGAGTTGAtatattcgagataaatcgaaggagacggta
taaagcaaagttgacatgtcgccgaaatcgccgtccactttgctcagAGA
CGGTGAAAAAAAtgccgtcgtctgtttaggtcagtaaaggcgatatagag
ccgtacatcaattatcgactttgttttgcatCGACTTCATTTACCGTCGC
GCttgatatcctccgatacaacAACTTGATATTTCTTTTAGGTGGACGGT
TTTCATGACATTAAAGACATTGTGGTTCAAAGAAAGCGAAGCGTTATCTA
TGATCTTG
Run BLAST on NCBI

transcript from alignment at scaffold_82:139041..139398+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072682 ID=TCONS_00072682|Name=TCONS_00072682|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at scaffold_82:139041..139398+ (Clytia hemisphaerica)
tacaGATTCGTCTAATACGATATTAAAGGGGTGCAGATTTTTATCGTTCT
TATCGTCATTAGCGAGTTGAtatattcgagataaatcgaaggagacggta
taaagcaaagttgacatgtcgccgaaatcgccgtccactttgctcagAGA
CGGTGAAAAAAAtgccgtcgtctgtttaggtcagtaaaggcgatatagag
ccgtacatcaattatcgactttgttttgcatCGACTTCATTTACCGTCGC
GCttgatatcctccgatacaacAACTTGATATTTCTTTTAGGTGGACGGT
TTTCATGACATTAAAGACATTGTGGTTCAAAGAAAGCGAAGCGTTATCTA
TGATCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045114XLOC_045114Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072682-exon-scaffold_82-1491911889:139041..139398TCONS_00072682-exon-scaffold_82-1491911889:139041..139398Clytia hemisphaericaexon
TCONS_00072682-exon-scaffold_82-1510915933:139041..139398TCONS_00072682-exon-scaffold_82-1510915933:139041..139398Clytia hemisphaericaexon
TCONS_00072682-exon-scaffold_82-1575043694:139041..139398TCONS_00072682-exon-scaffold_82-1575043694:139041..139398Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:139041..139398 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.476211	0.235545	1.68583	1.58254	0.963296	0.253736	0.918367	0.291845	1.01874	0.506747	0	0.16441	0.329755	0.657819	0.405613	0.145095	0.71498	0.366416	0	0	0.494415	0	0	1.07755	0	0	0.65298	0	0	0.612409
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top