TCONS_00072681 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072681
Unique NameTCONS_00072681
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072681 ID=TCONS_00072681|Name=TCONS_00072681|organism=Clytia hemisphaerica|type=transcript|length=330bp
CGAAggttcctctttcgatagctatcgaCCCAAATGTAGGGGAGAGGGCT
ACTCTTTCTCCCTGGGTtgttccacttacccttgatccatCCTTTTAATT
GCTGAGTATTTAAGCTCAGATGCATTAAGTATTATTTCGTAGTCTTTGGT
ATGACTTGGCAAGGGATTAAACCCACGACCTTGGGCGTCATAGCCGAATT
CTCTTCTTTACCTATTTTACACTGTGGTGTAAGTACGTCGTTAATTAGTT
CGATGTCTTTTTTTTAGTTTACAAGACAAAGCGTATTCTACTTTCGAAGA
TTTTAAAGTTTCAAGTACGGCTGGTCTTCT
Run BLAST on NCBI

transcript from alignment at scaffold_82:54988..55317+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072681 ID=TCONS_00072681|Name=TCONS_00072681|organism=Clytia hemisphaerica|type=transcript|length=330bp|location=Sequence derived from alignment at scaffold_82:54988..55317+ (Clytia hemisphaerica)
CGAAggttcctctttcgatagctatcgaCCCAAATGTAGGGGAGAGGGCT ACTCTTTCTCCCTGGGTtgttccacttacccttgatccatCCTTTTAATT GCTGAGTATTTAAGCTCAGATGCATTAAGTATTATTTCGTAGTCTTTGGT ATGACTTGGCAAGGGATTAAACCCACGACCTTGGGCGTCATAGCCGAATT CTCTTCTTTACCTATTTTACACTGTGGTGTAAGTACGTCGTTAATTAGTT CGATGTCTTTTTTTTAGTTTACAAGACAAAGCGTATTCTACTTTCGAAGA TTTTAAAGTTTCAAGTACGGCTGGTCTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045114XLOC_045114Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072681-exon-scaffold_82-1491911889:54988..55317TCONS_00072681-exon-scaffold_82-1491911889:54988..55317Clytia hemisphaericaexon
TCONS_00072681-exon-scaffold_82-1510915933:54988..55317TCONS_00072681-exon-scaffold_82-1510915933:54988..55317Clytia hemisphaericaexon
TCONS_00072681-exon-scaffold_82-1575043694:54988..55317TCONS_00072681-exon-scaffold_82-1575043694:54988..55317Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:54988..55317 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.293195 0 0.663942 1.73623 0 0 0 0 0 0 0 0 0 0.216489 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top