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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072664 ID=TCONS_00072664|Name=TCONS_00072664|organism=Clytia hemisphaerica|type=transcript|length=885bp
TGTTGCCATGACATTGACGATCGCTGCTCTAATCACTGCAATCCAATTCT
GGTTACGACTTGCCACCTTCCTTCATGGACCTCTAAAGTCATTTCTACTT
CATGTACTCCATGACCCTTCATACAATGGTCTACCTCAAGACCCTCAAAA
ACTATATCAAGCACTCTCGACACCTGCCAATCGAAAGACGATAAATGACT
TGAAGAATGGAAAGAAcggaaaaaagaaagttttacaaCAAGATCAGGTG
GATGCATTACTACCTCCTACTGGAAACGCAACCGACTCATCTCAATTTGA
TGTTACACTCATCTGTATTTTGATTATCAATTTTACCAATCTTCCTGCTC
CTCTCAAAGGATGGAAAAACAAAAATCCACCTGCAACTGACTTGAGTATC
GGTGCATTTGTAATTCGTGCGAGAGAATGGCGAAATTACATTCACCACAC
AGATCCAgataaaatcaatcaaacagAATTTAATCAGAAATGGATGGAAG
GAGAGCAAATCATCAACAATCTTGGCTTCACTTACGACACAATGCAGCTG
AAAACAATGTCATTGGACCTAAAGTACGAGAAGGTTGTCAAATCTATGTA
TTTGTATCTAGAGAGAAAGCAAGAAACACTTTCTAAACAACAGATGGCCC
TCGCTGCTCAACATACGGCCCTGGATACTAAACAGACGGCGCTGGATACC
AAACAGACGGCGCTGGATACTAAACAGACAACCCTGGATACTAAACAGAC
GGCGCTGGATTCCAAACAGACAGCCCTAGCAGACAAGCAGGCAGCCCTTG
AGAATCAACACAAATCCCTCGACAACCAACAAGCATCATTATCTCAAGAT
GTTACAGATTTACAAATTTCAACAACTCAAAAACT Run BLAST on NCBI protein sequence of TCONS_00072664-protein >TCONS_00072664-protein ID=TCONS_00072664-protein|Name=TCONS_00072664-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
VAMTLTIAALITAIQFWLRLATFLHGPLKSFLLHVLHDPSYNGLPQDPQK
LYQALSTPANRKTINDLKNGKNGKKKVLQQDQVDALLPPTGNATDSSQFD
VTLICILIINFTNLPAPLKGWKNKNPPATDLSIGAFVIRAREWRNYIHHT
DPDKINQTEFNQKWMEGEQIINNLGFTYDTMQLKTMSLDLKYEKVVKSMY
LYLERKQETLSKQQMALAAQHTALDTKQTALDTKQTALDTKQTTLDTKQT
ALDSKQTALADKQAALENQHKSLDNQQASLSQDVTDLQISTTQK Run BLAST on NCBI transcript from alignment at scaffold_81:85496..86485+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072664 ID=TCONS_00072664|Name=TCONS_00072664|organism=Clytia hemisphaerica|type=transcript|length=990bp|location=Sequence derived from alignment at scaffold_81:85496..86485+ (Clytia hemisphaerica)
TGTTGCCATGACATTGACGATCGCTGCTCTAATCACTGCAATCCAATTCT
GGTTACGACTTGCCACCTTCCTTCATGGACCTCTAAAGTCATTTCTACTT
CATGTACTCCATGACCCTTCATACAATGGTCTACCTCAAGACCCTCAAAA
ACTATATCAAGCACTCTCGACACCTGCCAATCGAAAGACGATAAATGACT
TGAAGAATGGAAAGAAcggaaaaaagaaagttttacaaCAAGATCAGGTG
GATGCATTACTACCTCCTACTGGAAACGCAACCGACTCATCTCAATTTGA
TGTTACACTCATCTGTATTTTGATTATCAATTTTACCAATCTTCCTGCTC
CTCTCAAAGGATGGAAAAACAAAAATCCACCTGCAACTGACTTGAGTATC
GGTGCATTTGTAATTCGTGCGAGAGAATGGCGAAATTACATTCACCACAC
AGATCCAgataaaatcaatcaaacagAATTTAATCAGAAATGGATGGAAG
GAGAGCAAATCATCAACAATCTTGGCTTCACTTACGACACAATGCAGCTG
AAAACAATGTCATTGGACCTAAAGTACGAGAAGGTTGTCAAATCTATGTA
TTTGTATCTAGAGAGAAAGCAAGAAACACTTTCTAAACAACAGATGGCCC
TCGCTGCTCAACATACGGCCCTGGATACTAAACATACGGCCCTGGATACG
AAACATACGGCCCTAGCTACTCAACATACGGCCCTGGATACTAAACATAC
GGCCCTGGATACTAAACATACGGCCCTGGATACTAAACAGACGGCGCTGG
ATACCAAACAGACGGCGCTGGATACTAAACAGACAACCCTGGATACTAAA
CAGACGGCGCTGGATTCCAAACAGACAGCCCTAGCAGACAAGCAGGCAGC
CCTTGAGAATCAACACAAATCCCTCGACAACCAACAAGCATCATTATCTC
AAGATGTTACAGATTTACAAATTTCAACAACTCAAAAACT Coding sequence (CDS) from alignment at scaffold_81:85496..86485+ >TCONS_00072664 ID=TCONS_00072664|Name=TCONS_00072664|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_81:85496..86485+ (Clytia hemisphaerica)
GTTGCCATGACATTGACGATCGCTGCTCTAATCACTGCAATCCAATTCTG
GTTACGACTTGCCACCTTCCTTCATGGACCTCTAAAGTCATTTCTACTTC
ATGTACTCCATGACCCTTCATACAATGGTCTACCTCAAGACCCTCAAAAA
CTATATCAAGCACTCTCGACACCTGCCAATCGAAAGACGATAAATGACTT
GAAGAATGGAAAGAAcggaaaaaagaaagttttacaaCAAGATCAGGTGG
ATGCATTACTACCTCCTACTGGAAACGCAACCGACTCATCTCAATTTGAT
GTTACACTCATCTGTATTTTGATTATCAATTTTACCAATCTTCCTGCTCC
TCTCAAAGGATGGAAAAACAAAAATCCACCTGCAACTGACTTGAGTATCG
GTGCATTTGTAATTCGTGCGAGAGAATGGCGAAATTACATTCACCACACA
GATCCAgataaaatcaatcaaacagAATTTAATCAGAAATGGATGGAAGG
AGAGCAAATCATCAACAATCTTGGCTTCACTTACGACACAATGCAGCTGA
AAACAATGTCATTGGACCTAAAGTACGAGAAGGTTGTCAAATCTATGTAT
TTGTATCTAGAGAGAAAGCAAGAAACACTTTCTAAACAACAGATGGCCCT
CGCTGCTCAACATACGGCCCTGGATACTAAACAGACGGCGCTGGATACCA
AACAGACGGCGCTGGATACTAAACAGACAACCCTGGATACTAAACAGACG
GCGCTGGATTCCAAACAGACAGCCCTAGCAGACAAGCAGGCAGCCCTTGA
GAATCAACACAAATCCCTCGACAACCAACAAGCATCATTATCTCAAGATG
TTACAGATTTACAAATTTCAACAACTCAAAAAGTTGCCATGACATTGACG
ATCGCTGCTCTAATCACTGCAATCCAATTCTGGTTACGACTTGCCACCTT
CCTTCATGGACCTCTAAAGTCATTTCTACTTCATGTACTCCATGACCCTT
CATACAATGGTCTACCTCAAGACCCTCAAAAACTATATCAAGCACTCTCG
ACACCTGCCAATCGAAAGACGATAAATGACTTGAAGAATGGAAAGAAcgg
aaaaaagaaagttttacaaCAAGATCAGGTGGATGCATTACTACCTCCTA
CTGGAAACGCAACCGACTCATCTCAATTTGATGTTACACTCATCTGTATT
TTGATTATCAATTTTACCAATCTTCCTGCTCCTCTCAAAGGATGGAAAAA
CAAAAATCCACCTGCAACTGACTTGAGTATCGGTGCATTTGTAATTCGTG
CGAGAGAATGGCGAAATTACATTCACCACACAGATCCAgataaaatcaat
caaacagAATTTAATCAGAAATGGATGGAAGGAGAGCAAATCATCAACAA
TCTTGGCTTCACTTACGACACAATGCAGCTGAAAACAATGTCATTGGACC
TAAAGTACGAGAAGGTTGTCAAATCTATGTATTTGTATCTAGAGAGAAAG
CAAGAAACACTTTCTAAACAACAGATGGCCCTCGCTGCTCAACATACGGC
CCTGGATACTAAACAGACGGCGCTGGATACCAAACAGACGGCGCTGGATA
CTAAACAGACAACCCTGGATACTAAACAGACGGCGCTGGATTCCAAACAG
ACAGCCCTAGCAGACAAGCAGGCAGCCCTTGAGAATCAACACAAATCCCT
CGACAACCAACAAGCATCATTATCTCAAGATGTTACAGATTTACAAATTT
CAACAACTCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072664-exon-scaffold_81-1491911889:85496..86157 | TCONS_00072664-exon-scaffold_81-1491911889:85496..86157 | Clytia hemisphaerica | exon |
| TCONS_00072664-exon-scaffold_81-1510915933:85496..86157 | TCONS_00072664-exon-scaffold_81-1510915933:85496..86157 | Clytia hemisphaerica | exon |
| TCONS_00072664-exon-scaffold_81-1575043694:85496..86157 | TCONS_00072664-exon-scaffold_81-1575043694:85496..86157 | Clytia hemisphaerica | exon |
| TCONS_00072664-exon-scaffold_81-1491911889:86263..86485 | TCONS_00072664-exon-scaffold_81-1491911889:86263..86485 | Clytia hemisphaerica | exon |
| TCONS_00072664-exon-scaffold_81-1510915933:86263..86485 | TCONS_00072664-exon-scaffold_81-1510915933:86263..86485 | Clytia hemisphaerica | exon |
| TCONS_00072664-exon-scaffold_81-1575043694:86263..86485 | TCONS_00072664-exon-scaffold_81-1575043694:86263..86485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_81 | supercontig | scaffold_81:85496..86485 + |
Blast
The following BLAST results are available for this feature:
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