TCONS_00072656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072656
Unique NameTCONS_00072656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072656 ID=TCONS_00072656|Name=TCONS_00072656|organism=Clytia hemisphaerica|type=transcript|length=326bp
ATTTTTATTCCCCCACGAATCTCTGGGGGAATAAATGTAAAAAGTTACAG
ACGATacggtgtcgaggaaaaagccgtggtcgtctggtacaggctaaCCT
GCACCAGACTTAATCTCACATATTGCGTAGCTTAGTATTGCCTCCATCTA
CCTACTCTGTATCAGAGTGTATCTCATGTTTATCTCGTTTCGTAGTACTA
Cagccaatgaattttgaaattagccgtagatatcgggtctgtgtacagac
cgTACGacaatgaaatttgaaattaaaaaccgTCAGTAATACCTGCtatg
caaaatgtttttttctgtaACTTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_80:249242..249567

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072656 ID=TCONS_00072656|Name=TCONS_00072656|organism=Clytia hemisphaerica|type=transcript|length=326bp|location=Sequence derived from alignment at scaffold_80:249242..249567 (Clytia hemisphaerica)
AAAAAGTtacagaaaaaaacattttgcataGCAGGTATTACTGAcggttt ttaatttcaaatttcattgtCGTAcggtctgtacacagacccgatatcta cggctaatttcaaaattcattggctGTAGTACTACGAAACGAGATAAACA TGAGATACACTCTGATACAGAGTAGGTAGATGGAGGCAATACTAAGCTAC GCAATATGTGAGATTAAGTCTGGTGCAGGttagcctgtaccagacgacca cggctttttcctcgacaccgtATCGTCTGTAACTTTTTACATTTATTCCC CCAGAGATTCGTGGGGGAATAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045100XLOC_045100Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072656-exon-scaffold_80-1491911889:249242..249567TCONS_00072656-exon-scaffold_80-1491911889:249242..249567Clytia hemisphaericaexon
TCONS_00072656-exon-scaffold_80-1510915933:249242..249567TCONS_00072656-exon-scaffold_80-1510915933:249242..249567Clytia hemisphaericaexon
TCONS_00072656-exon-scaffold_80-1575043694:249242..249567TCONS_00072656-exon-scaffold_80-1575043694:249242..249567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_80supercontigscaffold_80:249242..249567 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.683064 1.32298 2.45353 4.01043 4.04467 2.36487 0.510848 3.19542 0.856365 1.72314 1.0802 1.57114 3.10414 2.14428 0.90115 0.659013 2.62852 0.996082 2.25625 2.10692 0.299697 0.428983 0.422849 0.352014 5.10192 2.07273 1.84006 0.51006 1.45097 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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