TCONS_00072654 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072654
Unique NameTCONS_00072654
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072654 ID=TCONS_00072654|Name=TCONS_00072654|organism=Clytia hemisphaerica|type=transcript|length=286bp
TGCTGCTGAGAAAGttgagctgaaattttgcactgGTAACACTTGTAGTA
ATAGTAAGATACATTTCACTGAATGGAACAAATATTTGTACGAAGCTTCA
TAATAAAACCATTATTACCATGATTTTATGGTTCTACAATGAGACTTGGA
CATTATGGACATATGAATTTTTTAGCGTAAGAAGAATTTATTATATCAAT
GCAATTAATTAAAGGACTTGGAACGATGCTATCATTGTACGAAAATGGTA
TGGTATAATGTATGTCAGATCTAGTTTGAAAGCTTG
Run BLAST on NCBI

transcript from alignment at scaffold_80:176146..176431

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072654 ID=TCONS_00072654|Name=TCONS_00072654|organism=Clytia hemisphaerica|type=transcript|length=286bp|location=Sequence derived from alignment at scaffold_80:176146..176431 (Clytia hemisphaerica)
CAAGCTTTCAAACTAGATCTGACATACATTATACCATACCATTTTCGTAC AATGATAGCATCGTTCCAAGTCCTTTAATTAATTGCATTGATATAATAAA TTCTTCTTACGCTAAAAAATTCATATGTCCATAATGTCCAAGTCTCATTG TAGAACCATAAAATCATGGTAATAATGGTTTTATTATGAAGCTTCGTACA AATATTTGTTCCATTCAGTGAAATGTATCTTACTATTACTACAAGTGTTA CcagtgcaaaatttcagctcaaCTTTCTCAGCAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045098XLOC_045098Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072654-exon-scaffold_80-1491911889:176146..176431TCONS_00072654-exon-scaffold_80-1491911889:176146..176431Clytia hemisphaericaexon
TCONS_00072654-exon-scaffold_80-1510915933:176146..176431TCONS_00072654-exon-scaffold_80-1510915933:176146..176431Clytia hemisphaericaexon
TCONS_00072654-exon-scaffold_80-1575043694:176146..176431TCONS_00072654-exon-scaffold_80-1575043694:176146..176431Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_80supercontigscaffold_80:176146..176431 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.37313 15.8638 7.50728 3.02401 0 0 1.17761 0 4.18626 5.22344 10.223 2.35692 4.14605 1.69016 3.6855 5.36038 4.56348 1.53726 6.13421 6.54902 15.58 11.7296 26.0025 18.9027 0 0 18.7991 15.6669 14.3416 15.6217
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top