TCONS_00072652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072652
Unique NameTCONS_00072652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072652 ID=TCONS_00072652|Name=TCONS_00072652|organism=Clytia hemisphaerica|type=transcript|length=227bp
CTCTCACTCACTAGACCCAGACTTTTTCCCCAATAATAAACATCATCAAT
ATATATAATAAACTTTTTACATTCTACCAGACAAAAACATAATCCTTTTG
TCCTGTCATTTAATTACTTTAGGATAATACATAATTAATTAGAAAGTCAA
TTATAGAAAAATAAGTCATTTCAATAAAGATAATAAAACTAATATAGTAT
CTTCGAATGTTCGAATTTGTAAGTAGG
Run BLAST on NCBI

transcript from alignment at scaffold_80:141908..142134

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072652 ID=TCONS_00072652|Name=TCONS_00072652|organism=Clytia hemisphaerica|type=transcript|length=227bp|location=Sequence derived from alignment at scaffold_80:141908..142134 (Clytia hemisphaerica)
CCTACTTACAAATTCGAACATTCGAAGATACTATATTAGTTTTATTATCT
TTATTGAAATGACTTATTTTTCTATAATTGACTTTCTAATTAATTATGTA
TTATCCTAAAGTAATTAAATGACAGGACAAAAGGATTATGTTTTTGTCTG
GTAGAATGTAAAAAGTTTATTATATATATTGATGATGTTTATTATTGGGG
AAAAAGTCTGGGTCTAGTGAGTGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045096XLOC_045096Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072652-exon-scaffold_80-1491911889:141908..142134TCONS_00072652-exon-scaffold_80-1491911889:141908..142134Clytia hemisphaericaexon
TCONS_00072652-exon-scaffold_80-1510915933:141908..142134TCONS_00072652-exon-scaffold_80-1510915933:141908..142134Clytia hemisphaericaexon
TCONS_00072652-exon-scaffold_80-1575043694:141908..142134TCONS_00072652-exon-scaffold_80-1575043694:141908..142134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_80supercontigscaffold_80:141908..142134 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.43209	0	0	1.22739	38.85	35.4228	25.6417	36.0081	13.0719	18.5048	28.0644	15.4967	29.4764	13.0099	13.8418	10.8032	19.1311	21.3139	18.8456	48.069	6.42779	3.13525	8.89306	4.62004	35.689	61.5798	6.07727	4.86437	3.68946	1.25299
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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