TCONS_00072651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072651
Unique NameTCONS_00072651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072651 ID=TCONS_00072651|Name=TCONS_00072651|organism=Clytia hemisphaerica|type=transcript|length=233bp
CACGGCCGGCTAAAGAGGTCccactgaaacaggggtgtttCAAAATGTAT
CTTTGATTAATTCGCAGACTTTGAAAAACAGAACAATGCATCCAGCAAAA
GTGGACCTagaaaaaaatcctaaattGTTTTTTGAACTTGGAAATAAATg
ctattaaaattcaaaattcgtAAAAAAGTTCTGTTTTAAGGGTATATAAT
AAACAAATCATAATGAGTAATTCTATGCACAAT
Run BLAST on NCBI

transcript from alignment at scaffold_80:141533..141765

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072651 ID=TCONS_00072651|Name=TCONS_00072651|organism=Clytia hemisphaerica|type=transcript|length=233bp|location=Sequence derived from alignment at scaffold_80:141533..141765 (Clytia hemisphaerica)
ATTGTGCATAGAATTACTCATTATGATTTGTTTATTATATACCCTTAAAA
CAGAACTTTTTTacgaattttgaattttaatagcATTTATTTCCAAGTTC
AAAAAACaatttaggatttttttctAGGTCCACTTTTGCTGGATGCATTG
TTCTGTTTTTCAAAGTCTGCGAATTAATCAAAGATACATTTTGaaacacc
cctgtttcagtggGACCTCTTTAGCCGGCCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045095XLOC_045095Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072651-exon-scaffold_80-1491911889:141533..141765TCONS_00072651-exon-scaffold_80-1491911889:141533..141765Clytia hemisphaericaexon
TCONS_00072651-exon-scaffold_80-1510915933:141533..141765TCONS_00072651-exon-scaffold_80-1510915933:141533..141765Clytia hemisphaericaexon
TCONS_00072651-exon-scaffold_80-1575043694:141533..141765TCONS_00072651-exon-scaffold_80-1575043694:141533..141765Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_80supercontigscaffold_80:141533..141765 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.07265	0	1.29423	2.42329	5.08981	2.10152	12.2387	0	5.35604	7.64816	1.14324	2.45375	3.77852	2.32371	6.42067	6.71877	2.91992	2.84847	1.15423	0	2.16163	4.82302	5.52138	0	2.23465	5.69189
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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