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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072649 ID=TCONS_00072649|Name=TCONS_00072649|organism=Clytia hemisphaerica|type=transcript|length=1793bp
CAAAAACGTACAAGAATCGGTTGACACTCTTAGAAAGGATCTTCTAAAAG
AGAAAACGGAGAGTGAAAAATATGTCCAAGCAGCTCAGGGAGTTGTTGAT
CTTGCAAACACTATAGTCAATAATTGGCAGAAATTTACTTCTAACGACCC
TTTACAAATCACATCTGGAGCTATTGCAATTATCGGTTCTATTGCCGGGG
CTGTCGGAGGGCCGATTGGTCTTTTGGTCTCTGGCGTATGTGGCCTCTTG
ACTGGCTTCTTGTCACTATTTGGTGGTAACAGTGGTCCATCTCTCGGGGA
TGTCGTTGATCAAGTGATTCGAAAAGCTCTTAATGATTACAAGGATGAAA
CAATCCACGCTCAGGTGATTGGTTCCTTAAAGGAGACAACAGCTCACATA
GCGAATTTGAATGGTGTAGCTTTGTACAATGATGGTCAAATGACGGATGT
TGAAAAATCATTTCTAACAAGTATAGATTTTTCAACAATTGGAGTCGAAA
CTCTTGGTGAACTTCAAGaacaattgaataaaaacaaactgacTCAAGAT
CCACCGACAGCGACTAGATTGGCAAATTATTGCTACTTCTACTGCATGAT
ATCACTATTGAAGCGCATTGTCTTAACCTTGCAGTGTAGCCTTCTTCGAC
AAAACAGTATGGAGTCCATCCACGCTGGCGTCGCTAATTACTTGTACAAA
ACCTTACCGAAAGAAGATCAAAAGGCGCTGAGCTTCTTAACTGAGCTGCC
TGATCAGGAGAACGATCACTGGTGGTGGCTCTACATCCGTCTTCATACTG
ATCTAAGTCAACCTCAACGTGAGATAATGTCAgcctttttcaaacaaatt
ggCTTGGAAATGAAAGGCCAACTATGCACAATCTACAATAATGCTGTTTT
TCAGAATATCGTTGCTGCAGAAACCTGGTATGACAGCGATAGACGGTATA
TCATTGCTCGAGctgatgaaaatttctgcaatTATCTTTTTAGAATAGTA
GGGTCTAAAGATAACTGTTCAATCTATTCAGTTAAATTTTGCGAATACTT
ATACCCAGAAGCTACTGTGCGAGATAACACGTATAGGTGCGTATTTTCAT
GGCGAAAAGGAGTCACGGTCAACGAAGGTCAATGGAATCTTTCCGATAAT
TCTATATTGAGTATTTACCGAAATGAGTTTATGTACTGCTATCAAAATTA
TGTTGTTACGAAAGTCGGCGGTAATGATCCGGATGAGGGAATGTGGAATG
TAAATAATGTGGATTTTGGAGATGACTTTGGTGATTGTTTTAACAGAATG
GGAGAGTTAAAACAATCATAAACTGCCTAAAATAATTCAAAGCTCAGTTG
TGCAACTGACGTTTCTGTTATTTCTATTCtatttcttaaaatcagtgttt
ttcatttgttatTGTGCGTAAATCCGGTTAATCGCGATAGTCGggttcga
tttcccgatctttccggtttgatttcccgatttAGTTTGCGTTTGCGCTC
GCTCTTACTTAGGTATActctttaaaattttatgttagatatatCATAGT
ATaagctttcttatactatggatATATCAAAAAAGGCTGACCACGATGAT
AAAGATGTTTGCATAATGGTTAACTACTCAAAAATGACAATTACTGAAGT
TTTTTGCAGCCGTCATTACGGCTGTTTTATTTATACTTGATCACTTATCC
TTGTTTTTGGTAGAGAAAATTTGGTTAAGCTGAGGTTAACCTTAATGTTT
TTCTAAGTCTATCTTTATTagttagctctagtttagacggctc Run BLAST on NCBI protein sequence of TCONS_00072649-protein >TCONS_00072649-protein ID=TCONS_00072649-protein|Name=TCONS_00072649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
KNVQESVDTLRKDLLKEKTESEKYVQAAQGVVDLANTIVNNWQKFTSNDP
LQITSGAIAIIGSIAGAVGGPIGLLVSGVCGLLTGFLSLFGGNSGPSLGD
VVDQVIRKALNDYKDETIHAQVIGSLKETTAHIANLNGVALYNDGQMTDV
EKSFLTSIDFSTIGVETLGELQEQLNKNKLTQDPPTATRLANYCYFYCMI
SLLKRIVLTLQCSLLRQNSMESIHAGVANYLYKTLPKEDQKALSFLTELP
DQENDHWWWLYIRLHTDLSQPQREIMSAFFKQIGLEMKGQLCTIYNNAVF
QNIVAAETWYDSDRRYIIARADENFCNYLFRIVGSKDNCSIYSVKFCEYL
YPEATVRDNTYRCVFSWRKGVTVNEGQWNLSDNSILSIYRNEFMYCYQNY
VVTKVGGNDPDEGMWNVNNVDFGDDFGDCFNRMGELKQS Run BLAST on NCBI transcript from alignment at scaffold_80:2097..3889 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072649 ID=TCONS_00072649|Name=TCONS_00072649|organism=Clytia hemisphaerica|type=transcript|length=1793bp|location=Sequence derived from alignment at scaffold_80:2097..3889 (Clytia hemisphaerica)
gagccgtctaaactagagctaactAATAAAGATAGACTTAGAAAAACATT
AAGGTTAACCTCAGCTTAACCAAATTTTCTCTACCAAAAACAAGGATAAG
TGATCAAGTATAAATAAAACAGCCGTAATGACGGCTGCAAAAAACTTCAG
TAATTGTCATTTTTGAGTAGTTAACCATTATGCAAACATCTTTATCATCG
TGGTCAGCCTTTTTTGATATatccatagtataagaaagcttATACTATGa
tatatctaacataaaattttaaagagTATACCTAAGTAAGAGCGAGCGCA
AACGCAAACTaaatcgggaaatcaaaccggaaagatcgggaaatcgaacc
CGACTATCGCGATTAACCGGATTTACGCACAataacaaatgaaaaacact
gattttaagaaataGAATAGAAATAACAGAAACGTCAGTTGCACAACTGA
GCTTTGAATTATTTTAGGCAGTTTATGATTGTTTTAACTCTCCCATTCTG
TTAAAACAATCACCAAAGTCATCTCCAAAATCCACATTATTTACATTCCA
CATTCCCTCATCCGGATCATTACCGCCGACTTTCGTAACAACATAATTTT
GATAGCAGTACATAAACTCATTTCGGTAAATACTCAATATAGAATTATCG
GAAAGATTCCATTGACCTTCGTTGACCGTGACTCCTTTTCGCCATGAAAA
TACGCACCTATACGTGTTATCTCGCACAGTAGCTTCTGGGTATAAGTATT
CGCAAAATTTAACTGAATAGATTGAACAGTTATCTTTAGACCCTACTATT
CTAAAAAGATAattgcagaaattttcatcagCTCGAGCAATGATATACCG
TCTATCGCTGTCATACCAGGTTTCTGCAGCAACGATATTCTGAAAAACAG
CATTATTGTAGATTGTGCATAGTTGGCCTTTCATTTCCAAGccaatttgt
ttgaaaaaggcTGACATTATCTCACGTTGAGGTTGACTTAGATCAGTATG
AAGACGGATGTAGAGCCACCACCAGTGATCGTTCTCCTGATCAGGCAGCT
CAGTTAAGAAGCTCAGCGCCTTTTGATCTTCTTTCGGTAAGGTTTTGTAC
AAGTAATTAGCGACGCCAGCGTGGATGGACTCCATACTGTTTTGTCGAAG
AAGGCTACACTGCAAGGTTAAGACAATGCGCTTCAATAGTGATATCATGC
AGTAGAAGTAGCAATAATTTGCCAATCTAGTCGCTGTCGGTGGATCTTGA
gtcagtttgtttttattcaattgttCTTGAAGTTCACCAAGAGTTTCGAC
TCCAATTGTTGAAAAATCTATACTTGTTAGAAATGATTTTTCAACATCCG
TCATTTGACCATCATTGTACAAAGCTACACCATTCAAATTCGCTATGTGA
GCTGTTGTCTCCTTTAAGGAACCAATCACCTGAGCGTGGATTGTTTCATC
CTTGTAATCATTAAGAGCTTTTCGAATCACTTGATCAACGACATCCCCGA
GAGATGGACCACTGTTACCACCAAATAGTGACAAGAAGCCAGTCAAGAGG
CCACATACGCCAGAGACCAAAAGACCAATCGGCCCTCCGACAGCCCCGGC
AATAGAACCGATAATTGCAATAGCTCCAGATGTGATTTGTAAAGGGTCGT
TAGAAGTAAATTTCTGCCAATTATTGACTATAGTGTTTGCAAGATCAACA
ACTCCCTGAGCTGCTTGGACATATTTTTCACTCTCCGTTTTCTCTTTTAG
AAGATCCTTTCTAAGAGTGTCAACCGATTCTTGTACGTTTTTG Coding sequence (CDS) from alignment at scaffold_80:2097..3889 >TCONS_00072649 ID=TCONS_00072649|Name=TCONS_00072649|organism=Clytia hemisphaerica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_80:2097..3889 (Clytia hemisphaerica)
TTATGATTGTTTTAACTCTCCCATTCTGTTAAAACAATCACCAAAGTCAT
CTCCAAAATCCACATTATTTACATTCCACATTCCCTCATCCGGATCATTA
CCGCCGACTTTCGTAACAACATAATTTTGATAGCAGTACATAAACTCATT
TCGGTAAATACTCAATATAGAATTATCGGAAAGATTCCATTGACCTTCGT
TGACCGTGACTCCTTTTCGCCATGAAAATACGCACCTATACGTGTTATCT
CGCACAGTAGCTTCTGGGTATAAGTATTCGCAAAATTTAACTGAATAGAT
TGAACAGTTATCTTTAGACCCTACTATTCTAAAAAGATAattgcagaaat
tttcatcagCTCGAGCAATGATATACCGTCTATCGCTGTCATACCAGGTT
TCTGCAGCAACGATATTCTGAAAAACAGCATTATTGTAGATTGTGCATAG
TTGGCCTTTCATTTCCAAGccaatttgtttgaaaaaggcTGACATTATCT
CACGTTGAGGTTGACTTAGATCAGTATGAAGACGGATGTAGAGCCACCAC
CAGTGATCGTTCTCCTGATCAGGCAGCTCAGTTAAGAAGCTCAGCGCCTT
TTGATCTTCTTTCGGTAAGGTTTTGTACAAGTAATTAGCGACGCCAGCGT
GGATGGACTCCATACTGTTTTGTCGAAGAAGGCTACACTGCAAGGTTAAG
ACAATGCGCTTCAATAGTGATATCATGCAGTAGAAGTAGCAATAATTTGC
CAATCTAGTCGCTGTCGGTGGATCTTGAgtcagtttgtttttattcaatt
gttCTTGAAGTTCACCAAGAGTTTCGACTCCAATTGTTGAAAAATCTATA
CTTGTTAGAAATGATTTTTCAACATCCGTCATTTGACCATCATTGTACAA
AGCTACACCATTCAAATTCGCTATGTGAGCTGTTGTCTCCTTTAAGGAAC
CAATCACCTGAGCGTGGATTGTTTCATCCTTGTAATCATTAAGAGCTTTT
CGAATCACTTGATCAACGACATCCCCGAGAGATGGACCACTGTTACCACC
AAATAGTGACAAGAAGCCAGTCAAGAGGCCACATACGCCAGAGACCAAAA
GACCAATCGGCCCTCCGACAGCCCCGGCAATAGAACCGATAATTGCAATA
GCTCCAGATGTGATTTGTAAAGGGTCGTTAGAAGTAAATTTCTGCCAATT
ATTGACTATAGTGTTTGCAAGATCAACAACTCCCTGAGCTGCTTGGACAT
ATTTTTCACTCTCCGTTTTCTCTTTTAGAAGATCCTTTCTAAGAGTGTCA
ACCGATTCTTGTACGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072649-exon-scaffold_80-1491911889:2097..3889 | TCONS_00072649-exon-scaffold_80-1491911889:2097..3889 | Clytia hemisphaerica | exon |
| TCONS_00072649-exon-scaffold_80-1510915933:2097..3889 | TCONS_00072649-exon-scaffold_80-1510915933:2097..3889 | Clytia hemisphaerica | exon |
| TCONS_00072649-exon-scaffold_80-1575043694:2097..3889 | TCONS_00072649-exon-scaffold_80-1575043694:2097..3889 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_80 | supercontig | scaffold_80:2097..3889 . |
Blast
The following BLAST results are available for this feature:
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