TCONS_00072648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072648
Unique NameTCONS_00072648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072648 ID=TCONS_00072648|Name=TCONS_00072648|organism=Clytia hemisphaerica|type=transcript|length=358bp
attgactttagacagccaactaTTTTCCCACTTTAGTTCACAATTAGAAA
AGGCAGGGTGAAAAGTGGGTAGTCTAAACTATAGCTTATAGTTATAGTTT
ATTGGCCAATCTTTAAACCATGCATAATATCTCCTGAGCTTAGAGTACAA
CATATGTGCAgcctttctttttttcttttttgagggGCGGTAAAACAACC
AggtagattcgctggattgCAGGATTGGGATTTCCATGTCAACCTTCAAG
ATCTGGTGTTTTGATATTAATCCAAATAGGTAGAGGGGACTGAGAATTAG
TCAAAGTGTGCAAAAAGCTGGCAATTTGAATCCTTGAAAGGGGAATTTCG
ACCACGCC
Run BLAST on NCBI

transcript from alignment at scaffold_80:1625..1982

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072648 ID=TCONS_00072648|Name=TCONS_00072648|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at scaffold_80:1625..1982 (Clytia hemisphaerica)
GGCGTGGTCGAAATTCCCCTTTCAAGGATTCAAATTGCCAGCTTTTTGCA
CACTTTGACTAATTCTCAGTCCCCTCTACCTATTTGGATTAATATCAAAA
CACCAGATCTTGAAGGTTGACATGGAAATCCCAATCCTGcaatccagcga
atctaccTGGTTGTTTTACCGCccctcaaaaaagaaaaaaagaaaggcTG
CACATATGTTGTACTCTAAGCTCAGGAGATATTATGCATGGTTTAAAGAT
TGGCCAATAAACTATAACTATAAGCTATAGTTTAGACTACCCACTTTTCA
CCCTGCCTTTTCTAATTGTGAACTAAAGTGGGAAAAtagttggctgtcta
aagtcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045092XLOC_045092Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072648-exon-scaffold_80-1491911889:1625..1982TCONS_00072648-exon-scaffold_80-1491911889:1625..1982Clytia hemisphaericaexon
TCONS_00072648-exon-scaffold_80-1510915933:1625..1982TCONS_00072648-exon-scaffold_80-1510915933:1625..1982Clytia hemisphaericaexon
TCONS_00072648-exon-scaffold_80-1575043694:1625..1982TCONS_00072648-exon-scaffold_80-1575043694:1625..1982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_80supercontigscaffold_80:1625..1982 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.476211	0	0	0	0	0	0.306122	0.286588	0.200647	0	0.241233	0	0.316713	0	0.676021	0.580379	0	0.183208	0	0	0.230214	0	0.273007	0	1.02257	0.228156	0	0	1.05711	1.61555
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top