TCONS_00072646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072646
Unique NameTCONS_00072646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072646 ID=TCONS_00072646|Name=TCONS_00072646|organism=Clytia hemisphaerica|type=transcript|length=1370bp
TGTGAcccttttgaaaacaattttgttacaatGATCAACAGACATGTTCG
ctagaaaataaaacaaaatggcggaaaATTATGCTAGAACCTTATATTCA
TATTTTGCTAGAGAATCAAACGAGCTTTCATTTGATAGTGGAGTTGTGtt
gaaaattgtcgaaaaacaAGTCAGTGGTTGGTGGCTTGCCATTGATGAAT
CTCGTTCTATGCTAAAGACACTGGTGGAGCTCACTATGGTAACCCTGACG
AAGTCTTGATGTTGGAGTCGAAACAAAACAAGGATACTCTTAATAatcat
gaagatttttttaGTTCTGGATTGAAAAGATCAGCCGAGGATGCCCGTAG
ACTTGCTCAAGAGTATGTTTCCCCTGATGTGTTTTCTAATAATGTCACTA
CCAACAAGGATCGAAAGAGCTATGTATATGACATAGATAACAAATCGAAT
CAAGCCTTCGATAGCAAGAATGACGAGGCtagaattcaaattttgaatgc
TCTGTCTGACCCAAAGAAAGAATTGATACTCACTCATGATAGCTACCTAA
AGACCATGGATGACGAAGAGGCGCGAAAGGTTTTTGAGAGGTCCAATATT
CATCCGTATATTTACACCCAAATTCCTGGTCATTCAGCCAGCTGCAAAGA
AAGCCCTTCTCAACGTTTTCGTGTCAGCGTTAAAAACAAAGTAGGggagt
tttttattcaaaaagtgaCTCGTAAAGATGCCGAATTATCATTATCAATA
GAAAAGGAAGGATCATTTTTGGTGCGTGAAAGTGAAAGCAGTCCTGGTGA
TCTCACCATCTCGATCAAGCGACAAAAACACATTGGTCATGTTTGGATTG
GCAAAACAAAGAACGGAAAGTTTCTTTGCAAAGAAACGAACCATTATAAC
AGTATTGAAAATATCATCGGAAAATATGTATCAACATTTCTAGTGTCAAA
AGGAGGACAAGCTGTTCAATTGTCCGTCAACGATGAAGATATTATCTCAA
ATGAAGTCAACGATTACAATTCGTTCAAGAAGAAATCTTATTACATAGGC
AGCTTGTCACAACAAGCTTGTGAAGACAGATTGAAAGATACTGCAAATGG
TTCCTTCTTGTTAAGCGAGGTCGATAAGgAAAGAAAATGGATGTTGTCAG
CCAAATTCCCTGCGATCGTGGGGCATTTTTACATCACTCTCGATAAAAAC
TATTCAATATGGCCATGTTTTCATTCGATTCATTCAGCTCTTATCAAACA
ATCAAAGGAGTTGTCGAagtagcctccgtctcggaagaggactgggcctg
aatttgcggacgttttcacagtttcactttcgttttcggctatgcgacag
cgttttcaagcagaaagcag
Run BLAST on NCBI

protein sequence of TCONS_00072646-protein

>TCONS_00072646-protein ID=TCONS_00072646-protein|Name=TCONS_00072646-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MLESKQNKDTLNNHEDFFSSGLKRSAEDARRLAQEYVSPDVFSNNVTTNK
DRKSYVYDIDNKSNQAFDSKNDEARIQILNALSDPKKELILTHDSYLKTM
DDEEARKVFERSNIHPYIYTQIPGHSASCKESPSQRFRVSVKNKVGEFFI
QKVTRKDAELSLSIEKEGSFLVRESESSPGDLTISIKRQKHIGHVWIGKT
KNGKFLCKETNHYNSIENIIGKYVSTFLVSKGGQAVQLSVNDEDIISNEV
NDYNSFKKKSYYIGSLSQQACEDRLKDTANGSFLLSEVDKERKWMLSAKF
PAIVGHFYITLDKNYSIWPCFHSIHSALIKQSKELSK
Run BLAST on NCBI

transcript from alignment at scaffold_80:386749..389681-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072646 ID=TCONS_00072646|Name=TCONS_00072646|organism=Clytia hemisphaerica|type=transcript|length=2933bp|location=Sequence derived from alignment at scaffold_80:386749..389681- (Clytia hemisphaerica)
TGTGACCCTTTTGAAAACAATTTTGTTACAATGATCAACAGACATGTTCG
CTAGAAAATAAAACAAAATGGCGGAAAATTATGCTAGAACCTTATATTCA
TATTTTGCTAGAGAATCAAACGAGCTTTCATTTGATAGTGGAGTTGTGTT
GAAAATTGTCGAAAAACAAGTCAGTGGTTGGTGGCTTGCCATTGATGAAT
CTCGTTCTATGCTAAAGACACTGGTGGAGCTCACTATGGTAACCCTGACG
AAGTCTTGATGTTGGAGTCGAAACAAAACAAGGATACTCTTAATAATCAT
GAAGATTTTTTTAGTTCTGGATTGAAAAGATCAGCCGAGGATGCCCGTAG
ACTTGCTCAAGAGTATGTTTCCCCTGATGTGTTTTCTAATAATGTCACTA
CCAACAAGGATCGAAAGAGCTATGTATATGACATAGATAACAAATCGAAT
CAAGCCTTCGATAGCAAGAATGACGAGGCTAGAATTCAAATTTTGAATGC
TCTGTCTGACCCAAAGAAAGAATTGATACTCACTCATGATAGCTACCTAA
AGACCATGGATGACGAAGAGGCGCGAAAGGTTTTTGAGAGGTCCAATATT
CATCCGTATATTTACACCCAAATTCCTGGTCATTCAGCCAGCTGCAAAGA
AAGCCCTTCTCAACGTTTTCGTGTCAGCGTTAAAAACAAAGTAGGGGAGT
TTTTTATTCAAAAAGTGACTCGTAAAGATGCCGAATTATCATTATCAATA
GAAAAGGAAGGATCATTTTTGGTGCGTGAAAGTGAAAGCAGTGTAGGTAT
TTTAAGCAGGATTTTTTGAAACCTTTGCCATGTACAGTTTGTCCAGAGAA
AAATTAACTGGTGTGACCCCCCCTCCCCCCCCCCCCCCTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCCCAGCTTACTGGAGAATTTGTCCTGAATTCCATCTCCA
GTGGGAAAATATCCGAAAATTCCAGCCCAACTGGAAAATTGACTTAATTC
CCATTTGAAATTAAATAGAAACAAATGTACTCTTACAGCATCAAAGTGGA
TTTTTTGAACTTGAAACAAAAGAATTTCTTTTCCAGATATAGGGAATTCT
ATAAGATTTTTATCACTGCTGAGGGAAAAGTTCCACTGGGACTACGTAAG
GGACAGGCAGGGGTGTTAATGAATTTTGAAGATTTCAATTTTTATAAATT
CTGTTCCACGGTATAAGCCAAAAACAATGAAATCATTTTTTCTAGAAAAG
GCTGCGCGAAAATTGAAATTCGAGGACAATAAGTAGTTATTCCAAGAACA
ATAATGTTTCCTATAAACGCATTCAACGTTACAGCTTTTTTGAGTTTTAA
TTTAACTTTCTTTTCACAGCCTGGTGATCTCACCATCTCGATCAAGCGAC
AAAAACACATTGGTCATGTTTGGATTGGCAAAACAAAGAACGGAAAGTTT
CTTTGCAAAGAAACGAACCATTATAACAGTATTGAAAATATCATCGGAAA
ATATGTATCAACATTTCTAGTGTCAAAAGGAGGACAAGCTGTTCAATTGT
CCGTCAACGATGAAGATATTATCTCAAATGAAGTCAACGATTACAATTCG
TTCAAGAAGAAATCTTATTACATAGGCAGCTTGTCACAACAAGCTTGTGA
AGACAGATTGAAAGATACTGCAAATGGTTCCTTCTTGTTAAGCGAGGTCG
ATAAGGTAGGTGGATTTAACAACACGTTCTGCAATACTGTCTCTTTTTTT
TCTTCTAGTAGCCCAGCTGCCACACGACGTTGTTTCAACGTTCATCTAAC
GTTAAATGGATGTTGTGAACGTTAAATAAACGTCAAAAAACGTTGTGTGT
CAGCTGGGAGTAGGATGTGAATCGTTTTCAACAAGCGTTTGAAGATATTC
ATCTACTTACGTTTTTTTTAAGAGGAAACTATATAACAACATAAGGCTTC
AATGGCCAAAATATTAAGAATAAGTTAGGAACATTTTAACCCTTTGCGGG
CTTTGTGGGCTTTGCGGGCTCTAATACAACCGATTTCTTAGGAAATTGAC
AAAAAAACTCACCAAATGGTGAAAATAAGAACATTTTAAGAACATTTTTA
GGTTTAAAACTCAAAATGTTGAGAATACTCGATGGCTTCAAAAACTTTAA
AAGTTCTTTATTGAATAACGTGTGCCTCAGCCGAGCTAGAGCCTTAGGCT
GCGCGCATTCCCGGAATTGGTTTTGATATATGGGGTGCGTATCGTGTATA
AAATTCTCGTCTGAGAGTTACCCCAACTTCGGGGTAAAAAATCTCTTTAA
TATACTAAAATTTTTTACCGGGTGGTCCAAAAAAAACTTCCATAAGTTTC
AAATTTTGACGTAGAGCTTTTTGAAATTTGAAATTTATGGAAGTTTTTTT
TGGACCACCCGGTATATGTGCATTTCTCTTTTTTTTTACAGGAAAGAAAA
TGGATGTTGTCAGCCAAATTCCCTGCGATCGTGGGGCATTTTTACATCAC
TCTCGATAAAAACTATTCAATATGGCCATGTTTTCATTCGATTCATTCAG
CTCTTATCAAACAATCAAAGGAGTTGTCGAAGTAGCCTCCGTCTCGGAAG
AGGACTGGGCCTGAATTTGCGGACGTTTTCACAGTTTCACTTTCGTTTTC
GGCTATGCGACAGCGTTTTCAAGCAGAAAGCAG

Coding sequence (CDS) from alignment at scaffold_80:386749..389681-

>TCONS_00072646 ID=TCONS_00072646|Name=TCONS_00072646|organism=Clytia hemisphaerica|type=CDS|length=3042bp|location=Sequence derived from alignment at scaffold_80:386749..389681- (Clytia hemisphaerica)
GAAAGAAAATGGATGTTGTCAGCCAAATTCCCTGCGATCGTGGGGCATTT
TTACATCACTCTCGATAAAAACTATTCAATATGGCCATGTTTTCATTCGA
TTCATTCAGCTCTTATCAAACAATCAAAGGAGTTGTCGAAGTAGCCTGGT
GATCTCACCATCTCGATCAAGCGACAAAAACACATTGGTCATGTTTGGAT
TGGCAAAACAAAGAACGGAAAGTTTCTTTGCAAAGAAACGAACCATTATA
ACAGTATTGAAAATATCATCGGAAAATATGTATCAACATTTCTAGTGTCA
AAAGGAGGACAAGCTGTTCAATTGTCCGTCAACGATGAAGATATTATCTC
AAATGAAGTCAACGATTACAATTCGTTCAAGAAGAAATCTTATTACATAG
GCAGCTTGTCACAACAAGCTTGTGAAGACAGATTGAAAGATACTGCAAAT
GGTTCCTTCTTGTTAAGCGAGGTCGATAAGATGTTGGAGTCGAAACAAAA
CAAGGATACTCTTAATAATCATGAAGATTTTTTTAGTTCTGGATTGAAAA
GATCAGCCGAGGATGCCCGTAGACTTGCTCAAGAGTATGTTTCCCCTGAT
GTGTTTTCTAATAATGTCACTACCAACAAGGATCGAAAGAGCTATGTATA
TGACATAGATAACAAATCGAATCAAGCCTTCGATAGCAAGAATGACGAGG
CTAGAATTCAAATTTTGAATGCTCTGTCTGACCCAAAGAAAGAATTGATA
CTCACTCATGATAGCTACCTAAAGACCATGGATGACGAAGAGGCGCGAAA
GGTTTTTGAGAGGTCCAATATTCATCCGTATATTTACACCCAAATTCCTG
GTCATTCAGCCAGCTGCAAAGAAAGCCCTTCTCAACGTTTTCGTGTCAGC
GTTAAAAACAAAGTAGGGGAGTTTTTTATTCAAAAAGTGACTCGTAAAGA
TGCCGAATTATCATTATCAATAGAAAAGGAAGGATCATTTTTGGTGCGTG
AAAGTGAAAGCAGTGAAAGAAAATGGATGTTGTCAGCCAAATTCCCTGCG
ATCGTGGGGCATTTTTACATCACTCTCGATAAAAACTATTCAATATGGCC
ATGTTTTCATTCGATTCATTCAGCTCTTATCAAACAATCAAAGGAGTTGT
CGAAGTAGCCTGGTGATCTCACCATCTCGATCAAGCGACAAAAACACATT
GGTCATGTTTGGATTGGCAAAACAAAGAACGGAAAGTTTCTTTGCAAAGA
AACGAACCATTATAACAGTATTGAAAATATCATCGGAAAATATGTATCAA
CATTTCTAGTGTCAAAAGGAGGACAAGCTGTTCAATTGTCCGTCAACGAT
GAAGATATTATCTCAAATGAAGTCAACGATTACAATTCGTTCAAGAAGAA
ATCTTATTACATAGGCAGCTTGTCACAACAAGCTTGTGAAGACAGATTGA
AAGATACTGCAAATGGTTCCTTCTTGTTAAGCGAGGTCGATAAGATGTTG
GAGTCGAAACAAAACAAGGATACTCTTAATAATCATGAAGATTTTTTTAG
TTCTGGATTGAAAAGATCAGCCGAGGATGCCCGTAGACTTGCTCAAGAGT
ATGTTTCCCCTGATGTGTTTTCTAATAATGTCACTACCAACAAGGATCGA
AAGAGCTATGTATATGACATAGATAACAAATCGAATCAAGCCTTCGATAG
CAAGAATGACGAGGCTAGAATTCAAATTTTGAATGCTCTGTCTGACCCAA
AGAAAGAATTGATACTCACTCATGATAGCTACCTAAAGACCATGGATGAC
GAAGAGGCGCGAAAGGTTTTTGAGAGGTCCAATATTCATCCGTATATTTA
CACCCAAATTCCTGGTCATTCAGCCAGCTGCAAAGAAAGCCCTTCTCAAC
GTTTTCGTGTCAGCGTTAAAAACAAAGTAGGGGAGTTTTTTATTCAAAAA
GTGACTCGTAAAGATGCCGAATTATCATTATCAATAGAAAAGGAAGGATC
ATTTTTGGTGCGTGAAAGTGAAAGCAGTGAAAGAAAATGGATGTTGTCAG
CCAAATTCCCTGCGATCGTGGGGCATTTTTACATCACTCTCGATAAAAAC
TATTCAATATGGCCATGTTTTCATTCGATTCATTCAGCTCTTATCAAACA
ATCAAAGGAGTTGTCGAAGTAGCCTGGTGATCTCACCATCTCGATCAAGC
GACAAAAACACATTGGTCATGTTTGGATTGGCAAAACAAAGAACGGAAAG
TTTCTTTGCAAAGAAACGAACCATTATAACAGTATTGAAAATATCATCGG
AAAATATGTATCAACATTTCTAGTGTCAAAAGGAGGACAAGCTGTTCAAT
TGTCCGTCAACGATGAAGATATTATCTCAAATGAAGTCAACGATTACAAT
TCGTTCAAGAAGAAATCTTATTACATAGGCAGCTTGTCACAACAAGCTTG
TGAAGACAGATTGAAAGATACTGCAAATGGTTCCTTCTTGTTAAGCGAGG
TCGATAAGATGTTGGAGTCGAAACAAAACAAGGATACTCTTAATAATCAT
GAAGATTTTTTTAGTTCTGGATTGAAAAGATCAGCCGAGGATGCCCGTAG
ACTTGCTCAAGAGTATGTTTCCCCTGATGTGTTTTCTAATAATGTCACTA
CCAACAAGGATCGAAAGAGCTATGTATATGACATAGATAACAAATCGAAT
CAAGCCTTCGATAGCAAGAATGACGAGGCTAGAATTCAAATTTTGAATGC
TCTGTCTGACCCAAAGAAAGAATTGATACTCACTCATGATAGCTACCTAA
AGACCATGGATGACGAAGAGGCGCGAAAGGTTTTTGAGAGGTCCAATATT
CATCCGTATATTTACACCCAAATTCCTGGTCATTCAGCCAGCTGCAAAGA
AAGCCCTTCTCAACGTTTTCGTGTCAGCGTTAAAAACAAAGTAGGGGAGT
TTTTTATTCAAAAAGTGACTCGTAAAGATGCCGAATTATCATTATCAATA
GAAAAGGAAGGATCATTTTTGGTGCGTGAAAGTGAAAGCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045090XLOC_045090Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072646-proteinTCONS_00072646-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072646-exon-scaffold_80-1575043694:388890..389681TCONS_00072646-exon-scaffold_80-1575043694:388890..389681Clytia hemisphaericaexon
TCONS_00072646-exon-scaffold_80-1575043694:387727..388062TCONS_00072646-exon-scaffold_80-1575043694:387727..388062Clytia hemisphaericaexon
TCONS_00072646-exon-scaffold_80-1575043694:386749..386990TCONS_00072646-exon-scaffold_80-1575043694:386749..386990Clytia hemisphaericaexon
TCONS_00072646-exon-scaffold_80-1510915933:388890..389681TCONS_00072646-exon-scaffold_80-1510915933:388890..389681Clytia hemisphaericaexon
TCONS_00072646-exon-scaffold_80-1510915933:387727..388062TCONS_00072646-exon-scaffold_80-1510915933:387727..388062Clytia hemisphaericaexon
TCONS_00072646-exon-scaffold_80-1510915933:386749..386990TCONS_00072646-exon-scaffold_80-1510915933:386749..386990Clytia hemisphaericaexon
TCONS_00072646-exon-scaffold_80-1491911889:388890..389681TCONS_00072646-exon-scaffold_80-1491911889:388890..389681Clytia hemisphaericaexon
TCONS_00072646-exon-scaffold_80-1491911889:387727..388062TCONS_00072646-exon-scaffold_80-1491911889:387727..388062Clytia hemisphaericaexon
TCONS_00072646-exon-scaffold_80-1491911889:386749..386990TCONS_00072646-exon-scaffold_80-1491911889:386749..386990Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_80supercontigscaffold_80:386749..389681 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.061191	0.0596307	0	0.03385	0.412091	0.16282	1.53219	0.44136	0.90127	0.606029	0.216715	0.713371	0.996446	1.18422	1.54431	2.0131	1.4698	1.43426	0.812968	0.510781	0.621219	0.606384	0.455482	0.605223	4.20854	2.51816	0.041901	0.223589	0.169585	0.138224
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000980SH2
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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