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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072641 ID=TCONS_00072641|Name=TCONS_00072641|organism=Clytia hemisphaerica|type=transcript|length=1303bp
gtttttgtACGGTCACGATGTTTATTTGGTCCGTATTTGTAGTATTTTTC
GGTAAAATCCAAGTTATTTTTTGTAACACCTCATACGAAGTCAAAAATTT
TAACACCTTGGCTTTGGAAGAATCGGAAGAAATCAAAGGACCACGATCAA
TCACTGAATGTGTTATGAGATGtcaaagaaaaactaaagaagggttttac
acaaatgacaatAAATGTTTTTGTCATAATGGCGTTGTTGAAAATCAAGG
AGATGCAAGTGGagtttcaacaaaagaaaacaagCTTAATAACGAGGATA
AATctaTAATCCGTCTCTATCCCTACCAAGCTGACTTCACGTTGGATATA
TGGTCTGACAATGATGGTGGCCCGACTTACGAAGCCTATGGTGAGATCAA
ATTCAatattggatttttcgatttcaacCAAAACGTCGTGATGTGGCATT
TGTGGAAACCCAATTATTTGAACGTCCTAAATGGTGCAACGCATACTATT
ACCAATACTCATATTTTCCAGGAAACCAACGAGTTTGCTCATGCAGGAAA
TTTAACAGCTCTAGGCACTGTTTGGGAGTGGGATGACTTTGGAGATGATA
ATAATGGATCGCCACACGGTGACGTGTTCCAAATGAAAGACGTACTGGAT
GAAAGTGTCAAACGACGTTATGATGGATACGGTGCAGCGCATATTGACAT
TACACTTAAAATCACCAGACTTTGAATATCAAAGTGACGTTTCTGGATAA
TCGTTAACGACAGTGAAATGAAAACCTTTTCTTTTCATCCATTATTATTA
AAAACACTAAAgggattgtaaaaaaaaaacactgtcTAGTGTTAGTTGTA
GGCGGACTTTACTGACTTTACTACTTAATGTTTTCCTTTCCTATTTGGTA
TTCCATATTCTATTCTGCATTCTTCCTAAAAAAGAAGTGTTTCTACGATG
GGTCTCTTTTTTTGTCGCTTTATTGTTgttatatcaaagaaattcattaa
aataaatctattgtcaatttcatgaacaGATTTTATGActtaaagtaatt
aagaaaattatttaaaaaaatattcgaacgttcgattatgggagtgtttt
atgtAAATctatttatataatttttgttttgttttttcatctAGGTGTTt
gataaaacatatattcaataggttttcgttggttattggatttattaacc
atcggtgatgtatattcaactcggcttcgcctcgttgaatactttaatcg
gattaatttttacgagattaaatttttgccattttcgcgaaattaaaact
cgc Run BLAST on NCBI transcript from alignment at scaffold_80:326213..328257- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072641 ID=TCONS_00072641|Name=TCONS_00072641|organism=Clytia hemisphaerica|type=transcript|length=2045bp|location=Sequence derived from alignment at scaffold_80:326213..328257- (Clytia hemisphaerica)
GTTTTTGTACGGTCACGATGTTTATTTGGTCCGTATTTGTAGTATTTTTC
GGTAAAATCCAAGTTATTTTTTGTAACACCTCATACGAAGTCAAAAATTT
TAACACCTTGGCTTTGGAAGAATCGGAAGAAATCAAAGGACCACGATCAA
TCACTGAATGTGTTATGAGATGTCAAAGAAAAACTAAAGAAGGGTTTTAC
ACAAATGACAATAAATGTTTTTGTCATAATGGCGTTGTTGAAAATCAAGG
AGATGCAAGTGGAGTTTCAACAAAAGAAAACAAGCTTAATAACGAGGATA
AATGTGAGTAAATTTTTCTTTATATTTTTACACCCCCAAGTGACAGACCT
GCTTGGACCCAAGCCCCACTGGAGAATGGTCCCTGGTTGGAAAATGGAAC
AGAAGTTGATCTCATACCCTTTTGAAGTTTAAGTAAAGTTTTTCTGAGGC
TCGGCCGTTCTTATTTTTGGCACTTTTACCCTCATATGGTTCTTATCCTG
TTCTTAGTTATGGGTCAATAGCATACCGCAGTGAATCTAAAAATAGACAT
TGATTTTTCTGTTTGACCGAAATTCAATCCCATCACCCTTCGCGTTAACT
ACGCCTGCATGCAAATTACGCTCAACTACAAAGAAAAAGTAATGACTTTC
ACGACTTTTTAATTAAGACGAAAAGGATTGTGGGATTGATTTTCGGTCAA
GTGTTAAAAGTAATAATTATGACGTTTGCATAACGGTGTGCTATTGAGGT
ATTTTAGGCGCTATACCCAATTTTTACTACTTTGATTCCTAATTTTCATC
AAATTGAGTAATTTTAGGGCTCAGCATTGTTCTTAAATTGTTCTTATTTT
TTGGTGATTTTGAGCCTCATTGTTTTTATGAAATAATTTTTAAAAAAAAG
TGCAGAATTTCTATCCCTATAGAAATTTTTGTCTCCACGTGTTTTTAAAG
TATTTGTAGTTTATGAAAAAAATTAACAAAACACCTCATACTCATTTTCA
CTTTTTGTAGGAAATATTTAATACAAGAACTATTTTTTATTTCAGCTATA
ATCCGTCTCTATCCCTACCAAGCTGACTTCACGTTGGATATATGGTCTGA
CAATGATGGTGGCCCGACTTACGAAGCCTATGGTGAGATCAAATTCAATA
TTGGATTTTTCGATTTCAACCAAAACGTCGTGATGTGGCATTTGTGGAAA
CCCAATTATTTGAACGTCCTAAATGGTGCAACGCATACTATTACCAATAC
TCATATTTTCCAGGAAACCAACGAGTTTGCTCATGCAGGAAATTTAACAG
CTCTAGGCACTGTTTGGGAGTGGGATGACTTTGGAGATGATAATAATGGA
TCGCCACACGGTGACGTGTTCCAAATGAAAGACGTACTGGATGAAAGTGT
CAAACGACGTTATGATGGATACGGTGCAGCGCATATTGACATTACACTTA
AAATCACCAGACTTTGAATATCAAAGTGACGTTTCTGGATAATCGTTAAC
GACAGTGAAATGAAAACCTTTTCTTTTCATCCATTATTATTAAAAACACT
AAAGGGATTGTAAAAAAAAAACACTGTCTAGTGTTAGTTGTAGGCGGACT
TTACTGACTTTACTACTTAATGTTTTCCTTTCCTATTTGGTATTCCATAT
TCTATTCTGCATTCTTCCTAAAAAAGAAGTGTTTCTACGATGGGTCTCTT
TTTTTGTCGCTTTATTGTTGTTATATCAAAGAAATTCATTAAAATAAATC
TATTGTCAATTTCATGAACAGATTTTATGACTTAAAGTAATTAAGAAAAT
TATTTAAAAAAATATTCGAACGTTCGATTATGGGAGTGTTTTATGTAAAT
CTATTTATATAATTTTTGTTTTGTTTTTTCATCTAGGTGTTTGATAAAAC
ATATATTCAATAGGTTTTCGTTGGTTATTGGATTTATTAACCATCGGTGA
TGTATATTCAACTCGGCTTCGCCTCGTTGAATACTTTAATCGGATTAATT
TTTACGAGATTAAATTTTTGCCATTTTCGCGAAATTAAAACTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072641-exon-scaffold_80-1575043694:327955..328257 | TCONS_00072641-exon-scaffold_80-1575043694:327955..328257 | Clytia hemisphaerica | exon |
| TCONS_00072641-exon-scaffold_80-1575043694:326213..327212 | TCONS_00072641-exon-scaffold_80-1575043694:326213..327212 | Clytia hemisphaerica | exon |
| TCONS_00072641-exon-scaffold_80-1510915933:327955..328257 | TCONS_00072641-exon-scaffold_80-1510915933:327955..328257 | Clytia hemisphaerica | exon |
| TCONS_00072641-exon-scaffold_80-1510915933:326213..327212 | TCONS_00072641-exon-scaffold_80-1510915933:326213..327212 | Clytia hemisphaerica | exon |
| TCONS_00072641-exon-scaffold_80-1491911889:327955..328257 | TCONS_00072641-exon-scaffold_80-1491911889:327955..328257 | Clytia hemisphaerica | exon |
| TCONS_00072641-exon-scaffold_80-1491911889:326213..327212 | TCONS_00072641-exon-scaffold_80-1491911889:326213..327212 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_80 | supercontig | scaffold_80:326213..328257 - |
Blast
The following BLAST results are available for this feature:
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