|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072639 ID=TCONS_00072639|Name=TCONS_00072639|organism=Clytia hemisphaerica|type=transcript|length=827bp
tattttttcaaattttaaaagacgAAGTAAGATGTATGCCTGGCCAACTG
CATTACTACTATTGTTAGGCCAATTGTGCATTATCGTCTGTTATGTATCT
TACGAAATCACAAATCTTGTTAGTTCGTCTTTGGAAGAATCAGAAGAAAT
CAAAGGACCACGGTCAATCACTGAATGTGTTATGAGATGtcaaagaaaaa
ctaaagaaggattttacacaaatgacaacAAATGTTTTTGTCATAATGGC
GTTGTTGAAAACCAAGGAGATACAAGTGGagtttcaacaaaagaaaatga
actTAACAACGAGGATAAGTccATAATTGTGCTTCATCCTTACCGACTGG
ATTTCACATTGGAAATTTGGGTTGAATGGGACGGGTCTGGAATTTACGAG
ACATACGGTCAAATCTATCTCAATATTGGGAATTTCAACCATAACATCGA
TATGTGGCATGTACCATCATCTAATTATATACGTGTCCCGAACCAAGTAT
CCTACTTTGCCTCACATTCCCACACTTTTCAAGAATCAGAAGTATTTGCT
TATCTCGGCAATATAACTGCTCATGGAGATGTTTGGGAATTTGATTCAGG
GGATGATGACCATATTGCAACACCTGATGGAGAcgtatttcaaatgaaag
aaATTCTCAACCAGAATATCACAAGGCATTATCCTGGTAGTGGATCGTAT
ATAGAAATCTCACTCAAGGTCACCAAGCTTTATTAATGTcggtgttttga
ttttttatcattataaaAGTGCTAACATTTATTTATATATTAACATTGAA
TTAATTTATCGTATTTGTATCATAAAT Run BLAST on NCBI transcript from alignment at scaffold_80:317879..318979- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072639 ID=TCONS_00072639|Name=TCONS_00072639|organism=Clytia hemisphaerica|type=transcript|length=1101bp|location=Sequence derived from alignment at scaffold_80:317879..318979- (Clytia hemisphaerica)
TATTTTTTCAAATTTTAAAAGACGAAGTAAGATGTATGCCTGGCCAACTG
CATTACTACTATTGTTAGGCCAATTGTGCATTATCGTCTGTTATGTATCT
TACGAAATCACAAATCTTGTTAGTTCGTCTTTGGAAGAATCAGAAGAAAT
CAAAGGACCACGGTCAATCACTGAATGTGTTATGAGATGTCAAAGAAAAA
CTAAAGAAGGATTTTACACAAATGACAACAAATGTTTTTGTCATAATGGC
GTTGTTGAAAACCAAGGAGATACAAGTGGAGTTTCAACAAAAGAAAATGA
ACTTAACAACGAGGATAAGTGTGAGTGTTTCCTTTAGAAATTACAGTGTG
TGTTTGTTTACAATTTTCGAATGGGGTGGGATACACCAGGTCTATGATAC
AGCGGTGTTACTTAGCTATAACTTCAAGGTTGGCTAATCTATTATCTAGT
GGGGAGCCCTCTAGTGCTAGATTTGACAGCCCTTTTAGATCGAGCCTGAT
CGAGCTTTTCCAGATTTCCAACAGCCATGAGCAATGAATAACAAAATTTC
TCTCTCATGTGTAAACAAGAATATCTAATTATTTTCAATTTCAGCCATAA
TTGTGCTTCATCCTTACCGACTGGATTTCACATTGGAAATTTGGGTTGAA
TGGGACGGGTCTGGAATTTACGAGACATACGGTCAAATCTATCTCAATAT
TGGGAATTTCAACCATAACATCGATATGTGGCATGTACCATCATCTAATT
ATATACGTGTCCCGAACCAAGTATCCTACTTTGCCTCACATTCCCACACT
TTTCAAGAATCAGAAGTATTTGCTTATCTCGGCAATATAACTGCTCATGG
AGATGTTTGGGAATTTGATTCAGGGGATGATGACCATATTGCAACACCTG
ATGGAGACGTATTTCAAATGAAAGAAATTCTCAACCAGAATATCACAAGG
CATTATCCTGGTAGTGGATCGTATATAGAAATCTCACTCAAGGTCACCAA
GCTTTATTAATGTCGGTGTTTTGATTTTTTATCATTATAAAAGTGCTAAC
ATTTATTTATATATTAACATTGAATTAATTTATCGTATTTGTATCATAAA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072639-exon-scaffold_80-1575043694:318660..318979 | TCONS_00072639-exon-scaffold_80-1575043694:318660..318979 | Clytia hemisphaerica | exon |
| TCONS_00072639-exon-scaffold_80-1575043694:317879..318385 | TCONS_00072639-exon-scaffold_80-1575043694:317879..318385 | Clytia hemisphaerica | exon |
| TCONS_00072639-exon-scaffold_80-1510915933:318660..318979 | TCONS_00072639-exon-scaffold_80-1510915933:318660..318979 | Clytia hemisphaerica | exon |
| TCONS_00072639-exon-scaffold_80-1510915933:317879..318385 | TCONS_00072639-exon-scaffold_80-1510915933:317879..318385 | Clytia hemisphaerica | exon |
| TCONS_00072639-exon-scaffold_80-1491911889:318660..318979 | TCONS_00072639-exon-scaffold_80-1491911889:318660..318979 | Clytia hemisphaerica | exon |
| TCONS_00072639-exon-scaffold_80-1491911889:317879..318385 | TCONS_00072639-exon-scaffold_80-1491911889:317879..318385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_80 | supercontig | scaffold_80:317879..318979 - |
Blast
The following BLAST results are available for this feature:
|
