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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072633 ID=TCONS_00072633|Name=TCONS_00072633|organism=Clytia hemisphaerica|type=transcript|length=506bp
ACAcagtcaaataaaaaagatggaaTTCCTAGCAATATGGTGTTTGTCGA
TGATAGTCTGTTTCTTTGGATGTGAGGCCGCTGATAATCAAGCGGAAAGA
TATGATGCCCGGATTCATGTCACAAAGTATAGATGTAAGGTGACTAGCCT
GGCTGGTGAAATCATTAGCAGACTAGCTTCTGTCCGTGCAGaattagACA
TCAGGTATTCACCGATCGTCCATCACCAACCGACCAATCAAAATGCTCCA
GCTATTTTCAAATGTCATCTCCCACCATACAAATCATTCCTCAAAGTACA
TCAATGGCAAATCATCTCTCCACATAACTCCAACAATGCTAAAATTCTTG
GTTTAAGCGATGTATCCAATGGCTTCAAAGTTCTTTCGACTGGAGAGTTA
TTGATCTTGAATGTCGCTAAAAGTCATGGTGATTATAAATTTGCATGTGT
CAGCATAAATGTGTTGAGTAATGCAACAATGAGAAGCTCCCCAGCTATGT
TGTACA Run BLAST on NCBI transcript from alignment at scaffold_80:162023..165078- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072633 ID=TCONS_00072633|Name=TCONS_00072633|organism=Clytia hemisphaerica|type=transcript|length=3056bp|location=Sequence derived from alignment at scaffold_80:162023..165078- (Clytia hemisphaerica)
ACACAGTCAAATAAAAAAGATGGAATTCCTAGCAATATGGTGTTTGTCGA
TGATAGTCTGTTTCTTTGGATGTGAGGCCGCTGATAATCAAGGTATGTTA
TTGTTAAGTTTTCTTCAGGCAGAGAAATCTATTCTCTATTTGTCCACTCA
TAGGCTGTGTTTTTTGTAGCGTAATTACTCTAATCTGCCATGCAATCATT
GGAATGGTTTTTGTCGGATAAAGAAATTAAATATAGATCGCGTGTTACTG
TACTAAATCAAGTCATGCATAGATTTATAAAAGCCCAAAGGGCTAGATAG
AATGCTTTTGCTGAAAATTGTGCCGAGGTTAGGTAGGAAATCCTACCTAA
GTCATGTGACACTACAATAGAATTTAAGCGCTTGACCAATCAGAAGCCTC
GCGGGCTTTCGAAAACAATAGCAGCAATATTTTTTGCGATATTCACTTTT
TTTGCTTGGAAGAGCTTAAAGCACGCCATCTAGCCCTTCGGGCTTTATAA
ATCTCAGCCCAGCCAACCGACCATTTCGTTCTAAAAGTAATTCATCGCAC
GCAGCGCTTCTGCTCATTTTCATCTTGCGTTACTGACTATCTAAGCTTCT
TTCTGAACTCCTGAGTATAAATTCGGCCATCCGGCATCACCGTCAAATAT
TTAACGCTATCCAGTTTTATTCTGACTCAGTTGAGATTTCCTCAACACGC
TTCTGGGATTATATTCTTTTAACTTCTTAACTGAATGATCCACAGAACTA
ATTATTTAGAACCATACCTTACCTAAGAAGTAAACTTTATTTCCGGTAAT
ATTGATATGGCTGAAACAACCAGGATTTCCGCCATTGATTATATTTCTCT
CTCGTTTTATTATAGAATACCGGACTTATTTTTTATCCAGGTTTTTAGGT
TTCAAAAAATTTTAAACTTGATATTCAGCAGTAGTTAGAGAAAGAAAGTT
TATATCAAATTTATGGTAAAAAATAGCATGAAGGAAAATAGTAAGGCTAG
ATTTTTTTCTAGTCCTTAACCCTTTGAGTGCCAGGGTCCTTTTTTCTAAG
TTTTTTTTAAAAAATCGCTAGTTCAAACTTTAAGGGCTTATATCTCCTGA
TCTAGAAGGAATTAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCCTCCTATATAGCCCATGTCGTATATATACGACATCGGCACTTAA
AGGGTTAACAATTTTTGCCTTGGGAAATTATTATTAAACGTTTTACTACT
TTCCCCAACGATTCTTGCTCTTTCAAGTTATATTTAACTATTTTCTGATG
AAGTCAATGTATTTTTTTAGGGAAACAATATGCAAGTCTATCTTTCACTG
AACAGCCCTCTGACCTAACTTTTCTCAACACCATTGATGCCTCGATTACC
TGTAAAAGTTCTGGTGAACTTTCACCTAAAATCACCTGGTTAACAGAGTC
AGGTTCCGCTGTCACAGATATCCCGGAACTCCGTACAGTGTCTAATGACC
GGCTTATTTTTCACCATTTCCGAGCGGAAAGATATGATGCCCGGATTCAT
GTCACAAAGTATAGATGTAAGGTGACTAGCCTGGCTGGTGAAATCATTAG
CAGACTAGCTTCTGTCCGTGCAGGTACTTAGCATATTTTTTTTTGCAAAA
GATTTGGATAAAAGTTTTCTCAATCTACATACCTCTTTTTTTGAGAGATT
GCTCCTGTTTCTTCAGGTTTTGATTCCTTCCCTTGCTGTGATATATTTTC
ACCATCCATACATTATTCAAGTACATTTGCTTTATTAATACTATGTTATA
TAGTGCAGCTACGGATCGCAAGGTTGTGGGTTCAACCCCCCAGCCGGGTC
ATACCAAAGATTCTTCTCTGCTTAATGCTCAGCAATTAAGAGAAGGATCA
AGGGTAAATGGAGCAATCCAGGGAGAAAGAGTGGCGTCCTCCCCTACCTT
CGGGTAGATAGCTATCGAAAGAGGAGCCTTTGGGTTGCCTCCGACTGCGT
TCGCAGACTCATTTACTATATATAGTCCGCCCATGTTCATTTGGATGCTC
AAAGATAACGGAAATGAAAGTGATAGCTGACGGACACAACAAACATTCCT
TAACCAGCTTTTATAGTAATGAATTCTTTTTATTTTTTTAGAATTAGACA
TCAGGTATTCACCGATCGTCCATCACCAACCGACCAATCAAAATGCTCCA
GCTATTTTCAAATGTCATCTCCCACCATACAAATCATTCCTCAAAGTACA
TCAATGGCAAATCATCTCTCCACATAACTCCAACAATGCTAAAATTCTTG
GTTTAAGCGATGTATCCAATGGCTTCAAAGTTCTTTCGACTGGAGAGTTA
TTGATCTTGAATGTCGCTAAAAGTCATGGTGATTATAAATTTGCATGTGT
CAGCATAAATGTGTTGAGTAATGCAACAATGAGAAGCTCCCCAGCTATGT
TGTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072633-exon-scaffold_80-1575043694:164987..165078 | TCONS_00072633-exon-scaffold_80-1575043694:164987..165078 | Clytia hemisphaerica | exon |
| TCONS_00072633-exon-scaffold_80-1575043694:162856..162954 | TCONS_00072633-exon-scaffold_80-1575043694:162856..162954 | Clytia hemisphaerica | exon |
| TCONS_00072633-exon-scaffold_80-1575043694:162023..162337 | TCONS_00072633-exon-scaffold_80-1575043694:162023..162337 | Clytia hemisphaerica | exon |
| TCONS_00072633-exon-scaffold_80-1510915933:164987..165078 | TCONS_00072633-exon-scaffold_80-1510915933:164987..165078 | Clytia hemisphaerica | exon |
| TCONS_00072633-exon-scaffold_80-1510915933:162856..162954 | TCONS_00072633-exon-scaffold_80-1510915933:162856..162954 | Clytia hemisphaerica | exon |
| TCONS_00072633-exon-scaffold_80-1510915933:162023..162337 | TCONS_00072633-exon-scaffold_80-1510915933:162023..162337 | Clytia hemisphaerica | exon |
| TCONS_00072633-exon-scaffold_80-1491911889:164987..165078 | TCONS_00072633-exon-scaffold_80-1491911889:164987..165078 | Clytia hemisphaerica | exon |
| TCONS_00072633-exon-scaffold_80-1491911889:162856..162954 | TCONS_00072633-exon-scaffold_80-1491911889:162856..162954 | Clytia hemisphaerica | exon |
| TCONS_00072633-exon-scaffold_80-1491911889:162023..162337 | TCONS_00072633-exon-scaffold_80-1491911889:162023..162337 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_80 | supercontig | scaffold_80:162023..165078 - |
Blast
The following BLAST results are available for this feature:
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