TCONS_00072633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072633
Unique NameTCONS_00072633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072633 ID=TCONS_00072633|Name=TCONS_00072633|organism=Clytia hemisphaerica|type=transcript|length=506bp
ACAcagtcaaataaaaaagatggaaTTCCTAGCAATATGGTGTTTGTCGA
TGATAGTCTGTTTCTTTGGATGTGAGGCCGCTGATAATCAAGCGGAAAGA
TATGATGCCCGGATTCATGTCACAAAGTATAGATGTAAGGTGACTAGCCT
GGCTGGTGAAATCATTAGCAGACTAGCTTCTGTCCGTGCAGaattagACA
TCAGGTATTCACCGATCGTCCATCACCAACCGACCAATCAAAATGCTCCA
GCTATTTTCAAATGTCATCTCCCACCATACAAATCATTCCTCAAAGTACA
TCAATGGCAAATCATCTCTCCACATAACTCCAACAATGCTAAAATTCTTG
GTTTAAGCGATGTATCCAATGGCTTCAAAGTTCTTTCGACTGGAGAGTTA
TTGATCTTGAATGTCGCTAAAAGTCATGGTGATTATAAATTTGCATGTGT
CAGCATAAATGTGTTGAGTAATGCAACAATGAGAAGCTCCCCAGCTATGT
TGTACA
Run BLAST on NCBI

transcript from alignment at scaffold_80:162023..165078-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072633 ID=TCONS_00072633|Name=TCONS_00072633|organism=Clytia hemisphaerica|type=transcript|length=3056bp|location=Sequence derived from alignment at scaffold_80:162023..165078- (Clytia hemisphaerica)
ACACAGTCAAATAAAAAAGATGGAATTCCTAGCAATATGGTGTTTGTCGA TGATAGTCTGTTTCTTTGGATGTGAGGCCGCTGATAATCAAGGTATGTTA TTGTTAAGTTTTCTTCAGGCAGAGAAATCTATTCTCTATTTGTCCACTCA TAGGCTGTGTTTTTTGTAGCGTAATTACTCTAATCTGCCATGCAATCATT GGAATGGTTTTTGTCGGATAAAGAAATTAAATATAGATCGCGTGTTACTG TACTAAATCAAGTCATGCATAGATTTATAAAAGCCCAAAGGGCTAGATAG AATGCTTTTGCTGAAAATTGTGCCGAGGTTAGGTAGGAAATCCTACCTAA GTCATGTGACACTACAATAGAATTTAAGCGCTTGACCAATCAGAAGCCTC GCGGGCTTTCGAAAACAATAGCAGCAATATTTTTTGCGATATTCACTTTT TTTGCTTGGAAGAGCTTAAAGCACGCCATCTAGCCCTTCGGGCTTTATAA ATCTCAGCCCAGCCAACCGACCATTTCGTTCTAAAAGTAATTCATCGCAC GCAGCGCTTCTGCTCATTTTCATCTTGCGTTACTGACTATCTAAGCTTCT TTCTGAACTCCTGAGTATAAATTCGGCCATCCGGCATCACCGTCAAATAT TTAACGCTATCCAGTTTTATTCTGACTCAGTTGAGATTTCCTCAACACGC TTCTGGGATTATATTCTTTTAACTTCTTAACTGAATGATCCACAGAACTA ATTATTTAGAACCATACCTTACCTAAGAAGTAAACTTTATTTCCGGTAAT ATTGATATGGCTGAAACAACCAGGATTTCCGCCATTGATTATATTTCTCT CTCGTTTTATTATAGAATACCGGACTTATTTTTTATCCAGGTTTTTAGGT TTCAAAAAATTTTAAACTTGATATTCAGCAGTAGTTAGAGAAAGAAAGTT TATATCAAATTTATGGTAAAAAATAGCATGAAGGAAAATAGTAAGGCTAG ATTTTTTTCTAGTCCTTAACCCTTTGAGTGCCAGGGTCCTTTTTTCTAAG TTTTTTTTAAAAAATCGCTAGTTCAAACTTTAAGGGCTTATATCTCCTGA TCTAGAAGGAATTAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNCCCTCCTATATAGCCCATGTCGTATATATACGACATCGGCACTTAA AGGGTTAACAATTTTTGCCTTGGGAAATTATTATTAAACGTTTTACTACT TTCCCCAACGATTCTTGCTCTTTCAAGTTATATTTAACTATTTTCTGATG AAGTCAATGTATTTTTTTAGGGAAACAATATGCAAGTCTATCTTTCACTG AACAGCCCTCTGACCTAACTTTTCTCAACACCATTGATGCCTCGATTACC TGTAAAAGTTCTGGTGAACTTTCACCTAAAATCACCTGGTTAACAGAGTC AGGTTCCGCTGTCACAGATATCCCGGAACTCCGTACAGTGTCTAATGACC GGCTTATTTTTCACCATTTCCGAGCGGAAAGATATGATGCCCGGATTCAT GTCACAAAGTATAGATGTAAGGTGACTAGCCTGGCTGGTGAAATCATTAG CAGACTAGCTTCTGTCCGTGCAGGTACTTAGCATATTTTTTTTTGCAAAA GATTTGGATAAAAGTTTTCTCAATCTACATACCTCTTTTTTTGAGAGATT GCTCCTGTTTCTTCAGGTTTTGATTCCTTCCCTTGCTGTGATATATTTTC ACCATCCATACATTATTCAAGTACATTTGCTTTATTAATACTATGTTATA TAGTGCAGCTACGGATCGCAAGGTTGTGGGTTCAACCCCCCAGCCGGGTC ATACCAAAGATTCTTCTCTGCTTAATGCTCAGCAATTAAGAGAAGGATCA AGGGTAAATGGAGCAATCCAGGGAGAAAGAGTGGCGTCCTCCCCTACCTT CGGGTAGATAGCTATCGAAAGAGGAGCCTTTGGGTTGCCTCCGACTGCGT TCGCAGACTCATTTACTATATATAGTCCGCCCATGTTCATTTGGATGCTC AAAGATAACGGAAATGAAAGTGATAGCTGACGGACACAACAAACATTCCT TAACCAGCTTTTATAGTAATGAATTCTTTTTATTTTTTTAGAATTAGACA TCAGGTATTCACCGATCGTCCATCACCAACCGACCAATCAAAATGCTCCA GCTATTTTCAAATGTCATCTCCCACCATACAAATCATTCCTCAAAGTACA TCAATGGCAAATCATCTCTCCACATAACTCCAACAATGCTAAAATTCTTG GTTTAAGCGATGTATCCAATGGCTTCAAAGTTCTTTCGACTGGAGAGTTA TTGATCTTGAATGTCGCTAAAAGTCATGGTGATTATAAATTTGCATGTGT CAGCATAAATGTGTTGAGTAATGCAACAATGAGAAGCTCCCCAGCTATGT TGTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045084XLOC_045084Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072633-exon-scaffold_80-1575043694:164987..165078TCONS_00072633-exon-scaffold_80-1575043694:164987..165078Clytia hemisphaericaexon
TCONS_00072633-exon-scaffold_80-1575043694:162856..162954TCONS_00072633-exon-scaffold_80-1575043694:162856..162954Clytia hemisphaericaexon
TCONS_00072633-exon-scaffold_80-1575043694:162023..162337TCONS_00072633-exon-scaffold_80-1575043694:162023..162337Clytia hemisphaericaexon
TCONS_00072633-exon-scaffold_80-1510915933:164987..165078TCONS_00072633-exon-scaffold_80-1510915933:164987..165078Clytia hemisphaericaexon
TCONS_00072633-exon-scaffold_80-1510915933:162856..162954TCONS_00072633-exon-scaffold_80-1510915933:162856..162954Clytia hemisphaericaexon
TCONS_00072633-exon-scaffold_80-1510915933:162023..162337TCONS_00072633-exon-scaffold_80-1510915933:162023..162337Clytia hemisphaericaexon
TCONS_00072633-exon-scaffold_80-1491911889:164987..165078TCONS_00072633-exon-scaffold_80-1491911889:164987..165078Clytia hemisphaericaexon
TCONS_00072633-exon-scaffold_80-1491911889:162856..162954TCONS_00072633-exon-scaffold_80-1491911889:162856..162954Clytia hemisphaericaexon
TCONS_00072633-exon-scaffold_80-1491911889:162023..162337TCONS_00072633-exon-scaffold_80-1491911889:162023..162337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_80supercontigscaffold_80:162023..165078 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.926432 3.37827 0 4.01987 0 0 0.956819 0 0 0.314527 0 0 1.38573 1.3618 2.31574 0 0.318199 2.68268e-07 1.17453 1.13948 1.53484 0 0 0 0.0882091 1.73953
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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