TCONS_00072627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072627
Unique NameTCONS_00072627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072627 ID=TCONS_00072627|Name=TCONS_00072627|organism=Clytia hemisphaerica|type=transcript|length=3557bp
tctttatcaaaacaaatctcACCCTCCTCCACGGAGTTTTATGATACAAA
AACGATAACAACAAATCAATTATATGTAACATGTTCATGATATGACTAAA
AAAATCTAGTAATGTATTTACAAACAAAACTTTATACCGACAAGTTGTGA
ATTTTTCTACATGTTAAATGGTACacatctttttaattttaacgACAGCT
GATTTTTTGTACTGTTTATACGGCAAACACAGGACCAAGTAAAAGTAcaa
gaaaaaatctttgttttgcaACTAAACATCACTTGGCTTGGAGTATATAA
GCGATATCTTAAAAAACTTATGGAAGttattcattaaaaatgttCTGCAT
AGTACCAtgttatgaatttgaaatttataggAATAGACTTGAcattttta
tttatgatattgtATTCGACTGCAAAGTCAGTTAATGGTTCTGAAGAAAG
TCAAATTTACACGGATTTCCTAGCCTTAAAGGTTCAAGGTGGACATGAGA
ATGCAAGGCAAATAGCTCAAGATTCTGGATTATATTATCATGGCCAAGTT
GGAAGTTTGGATGATTGGTATATATTTAAACAGGTACCACCAACGGAAGG
ACAACATCGTAGAGTAAGACGAAGCATTTTGAATGAGATTGTAGGAAAGC
TATCGTCGTTTAAGAATGTTGATTTTGTGGATTCTCAAATCTTGCTGAAA
CGCAGTCGAAGGGATTTGGTATTTGACGATCCGTTGTATTCTCACCAATG
GAATCTACATGGAAAATACAGCTCGACAGATACGTGTACTTATAACATCA
ACGTAACAACTTTGTGGCGACAAAATATCACCGGTAAAAACGTCGTCGTC
ACTGTTGTTGATGATGGAGTTGAACACCGACATAAAGACATCGTCGGCAA
CTACGACGCCGACGCAAGTTTTGATTACAACAGTAACGACAAAGATCCGA
CACCACGACCGACGAGTAATAACATCAATAAGCATGGCACAAGgTGTGCT
GGACAAATTGCTGGCTCTGCCAATAACTCTGTTTGTGGTATTGGTGTCGC
TTACAACGCTAAAATTGGTGGTATTCGAATGTTCGACGGCCCTTATGTTG
ACTCTATTGAAGCAGCCTCGTTTTCATTCAAACCACAACACATAGATATT
TACAGTGTTTCATGGGGGCCCGATGATAATGGAAGAACAGTAGATGGCCC
ACGTCACTTAGCAACCAAAGCTATCAAAAATGGAATTGAATCGGGAAGAG
GTGGGTTAGGATCAATTTACGTTTTCGCAACTGGGAACGGTGGCAAGAAC
AAAGATCATTGTGGATGTGATGGTTTCGTTAGTATGGTTGAAACCATGGC
AATTAGTTCTGTTGATTATTGTGGAAATATTCCGTTCTATGCAGAGAGGT
GCACAGGTATCATGGCGGTGACATATAGTTCTGGATCCAACCCCGATAAG
AAAATCACCACAATAGATCTTGGTGGCAAATGTACAAATTATTTCACCNC
CCCGATAAGAAAATTACCACAATAGATCTTGGTGGCAAATGTACAAATTA
TTTCACCGGAACTTCGGCGTCTGCTCCAGTAGCAGCTGGAATTTTCGCAC
TGGCATTAGAAGTCAATAGCAATCTAACATGGCGTGATATGCAGCAGTTA
GTTGTTCATTCATCCGATAAAATCAAGCCTCGGTTTCAAACATGGATTAC
GAACGGTGCTGGACATCGAGTCAGTGAATATTTCGGGTTCGGTTCACTAA
ACGCTGGTCGTTTAGTAGAAATGGCGAAAAACCCGAACTGGAAGACTCTA
GCTCAACAACGTATTTGCAAATCTAATAACTTCGGTCAAAATCAAGATAT
TATACGTAGTTCTACGTTAACTTTAAAATATAATACAACTGCTTGCTCCG
AGAGTTCAAGTTACATATCTAAACTCGAGCATGTGAAAATCTACGTCACA
CTTGATTCGCTACCACGTGGAGGGCTGGAAATTAGTGTCCAATCTCCTTC
AGGAACTATTGCACCTATACTGAGACCACGTGGTAAAGATTTATATGCGA
GTAGTTTTGATAATTGGGGatttttatcagtttttttCTGGGATGAAGAT
CCAGTTGGTGAATGGACTATAAACATAAGACAAACGTCAAGCCGTGCACG
TACCGGAAAGTTATCGTCCGTATACCTTGAATGGTACGGAACTGTTGGGA
ATTCAACTGGGACATATACACCAAAACCGGAGGGCTCTACAACAACACCG
ACAAAAGCAACACCTGTTATTGCACCGACAAGTGGGAATGGATTTCATTT
CTCGACCGAATTGATATTGACAATCGTGTTCGCATCTTTAATTGTTTTAG
CCGTCGTAGCAGGAGTAATTTACAAATATCTCAAAGGACGAAGCCGAAGG
AGACGAAACGGTCAAGTCGTGGCAGTAATGAACAACAATGGCCCTGTGCG
ACGTACGTTTTCGAATACGTCTTACATAGACGACTTATCGTTCACGGTCA
CGCAATCGCCTCCACTTTCACCTACAATGACTTTTTCACACCATCAGCCC
GTTTTCGTTGAAGAAACAGATAGTAGAAAATGAGGGCAGTGTATAGTTTA
TAAAAAACTCTAAGTGAAAGGTTTTTTATAGAGACTCTGCTTAAAGTGAC
TCtttaatcattttttataactttttatgatattttttttgtgTCAGTTG
GGATGGAGAGACCGTAACATGTTGCTGTCTAAACTAATAGCATACCGTca
cgaatctaaaaatagacattgatttttatgtttgactgaatttcaatccc
atcaccctttgcgtttattacgcttgcacgcaaattacactcaattacaa
tgaaaaagtaataactttcacgacttttgaattaagacgaaaaggattgt
gggattgaatttcggtcaaatgagagaagtaataatcatGACGTTTACAC
GACGAAGCGCTATTAGGTTATTTATGTTTCTTCCCTCCAAATTATaattt
aggcgagaccaatttaatttgttgttctacgggcagatcgttagcaaaat
atgggtcggtcggtcggtaaaataagaacagatttttcatttatcagggt
tggtaaagtaccgaaaatgttttccataaaatatctggttcaaaaattca
ctttttttttatcttcgatgattatgataaaatcttagtgtatggaatgc
ttgattttctaaatttttcaatttcttgaattaattttcagctttattca
agtttGATTcatacaaataactagtgtgtaaaatatattttggtggaaat
tcaatattattatttttttgattttagcaaaaatagggtcggtcggtcgg
gcccgtagaacaacaaatcaaattggtctcgcctttcATTCACGGAGACA
GCGTGTGCCTACATTTTTCCGACTAAAGTATTCTTCGCTTTTCATcgata
aaaactttttgttaacgTTTCCAGACTGAATTTTTTGATCTAATATagac
aaaatgataaaatttgataaaataaaagtattttatattaaagaatatta
tatttat
Run BLAST on NCBI

protein sequence of TCONS_00072627-protein

>TCONS_00072627-protein ID=TCONS_00072627-protein|Name=TCONS_00072627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MNLKFIGIDLTFLFMILYSTAKSVNGSEESQIYTDFLALKVQGGHENARQ
IAQDSGLYYHGQVGSLDDWYIFKQVPPTEGQHRRVRRSILNEIVGKLSSF
KNVDFVDSQILLKRSRRDLVFDDPLYSHQWNLHGKYSSTDTCTYNINVTT
LWRQNITGKNVVVTVVDDGVEHRHKDIVGNYDADASFDYNSNDKDPTPRP
TSNNINKHGTRCAGQIAGSANNSVCGIGVAYNAKIGGIRMFDGPYVDSIE
AASFSFKPQHIDIYSVSWGPDDNGRTVDGPRHLATKAIKNGIESGRGGLG
SIYVFATGNGGKNKDHCGCDGFVSMVETMAISSVDYCGNIPFYAERCTGI
MAVTYSSGSNPDKKITTIDLGGKCTNYFTXPIRKLPQ
Run BLAST on NCBI

transcript from alignment at scaffold_80:60420..67489-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072627 ID=TCONS_00072627|Name=TCONS_00072627|organism=Clytia hemisphaerica|type=transcript|length=7070bp|location=Sequence derived from alignment at scaffold_80:60420..67489- (Clytia hemisphaerica)
TCTTTATCAAAACAAATCTCACCCTCCTCCACGGAGTTTTATGATACAAA
AACGATAACAACAAATCAATTATATGTAACATGTTCATGATATGACTAAA
AAAATCTAGTAATGTATTTACAAACAAAACTTTATACCGACAAGTTGTGA
ATTTTTCTACATGTTAAATGGTACACATCTTTTTAATTTTAACGACAGCT
GATTTTTTGTACTGTTTATACGGCAAACACAGGACCAAGTAAAAGTACAA
GAAAAAATCTTTGTTTTGCAACTAAACATCACTTGGCTTGGAGTATATAA
GCGATATCTTAAAAAACTTATGGAAGTTATTCATTAAAAATGTTCTGCAT
AGTACCATGTTATGAATTTGAAATTTATAGGAATAGACTTGACATTTTTA
TTTATGATATTGTATTCGACTGCAAAGTCAGTTAATGGTTCTGAAGAAAG
TCAAATTTACACGGATTTCCTAGCCTTAAAGGTTCAAGGTGGACATGAGA
ATGCAAGGCAAATAGCTCAAGATTCTGGATTATATTATCATGGCCAAGTT
GGAAGTTTGGATGATTGGTATATATTTAAACAGGTACCACCAACGGAAGG
ACAACATCGTAGAGTAAGACGAAGCATTTTGAATGAGATTGTAGGAAAGC
TATCGTCGTTTAAGAATGTTGATTTTGTGGATTCTCAAATCTTGCTGAAA
CGCAGTCGAAGGGATTTGGTATTTGACGATCCGTTGTATTCTCACCAATG
GAATCTACATGGAAAATACAGCTCGACAGGTATGTGATTTAAAAGCTTTT
GACACTCCTGTCTCAATGCACTGCACCAACGATAACGTTCTAGCTACAGT
CATGGTCGTAATAATTGAGAAAAAAGGGAAATTCATACGAAATCTTATAA
CCACAAACAATTTGGAAACGCTCTAAATTAGGATGGAAGGGTAGAGTTTT
AACTCTGAGTTTTAACAATAGACTTGAGACTTCAGGATCTAAGGATATCC
AAAAGTTCAAGAATGGTCCAATAGGGCTCAGAATATAGCCTGGAAGTCTA
TACCCCTCCCAAATTGAAATACTCGAATAAATTTATCAATTAGCCCAAAA
GCGACTTTCTCGCCCGAACTCCAAACCAAATTTCGAAAATAACAAGGGAA
TAAGCTAAATCCTCAATAGATTTTGACCATATGATGTATCATGCTGTCAC
AATGGATGATAAATAAGCCATTAGTAATATCAAAGGTAAAATCCTTTGCT
AACCAACGGGGTTGTGGAAGAGGGCTCGAAACACAGTAACCACTTGGATG
TAAAGTAAAAATTTTAGTAATTTTCCTTATATTGAACAAGATTAAAATGT
CAAATTATTTCCTAAGCCAAACTTTCTAAAAATACCGATCTCTTTTCCTA
ATTTTTCTTTGGAAACAAAACCAAGAGGTTCTTTGACAGGCACTTTGGCT
ATCAAAACATGGCAATATTTTTCTTTTGATGGCTATGTTATCTGTATAAA
TCATATCGCAAAAAATCACAAAATTCTATCAAAGAAAAACTTAATATCAT
CAGAGTCTCGGTAGTGAAGAAAAATGCTACCTCGACAATCATGAAAAGCC
AAAACAACGGCCTCAAACTATCTTTAAACTTACGTAACTCTTACATTTTT
TGTAACCCTTGTTTTAAGGGCTCTGGTCATAGTGAAAAATCAATTTTAGA
ATTTGAAGATAAAACCTCATGTTTTCGCTTCTTTGACATGCTTAAGAACA
AACTGCTTTTGAAAAAATGATTTTAAGTAATTACATCATGAGTAAAATAA
GGAATAAGTGTGGCATGGACCTTGATAAAACGTCATAACGACGCTATTCG
TATACTTTTCACAAAAAAAGCCTAATCTCCTTGGGGAAATCATTTTATTG
TTTCAAACTTTTTTAAAGTTAATGACAAATAATTTCTTTATTTAGATTTT
TTCGGAAAAATTTTCTATTTGGCTACATCCCAAGTTATAGCTGTTTTCGT
ATGGAAATTTAGTGGTAAAATTACCAAAAATGAGGTTTTTTGGAGATTTT
AAAGGAAAGATACTTCCACAAAAATTTTCCGAAATTACATTTTTAGATAC
TAAATAGATACATCATCTGAACCAAGAAAAATTCCGAAATGATTGATTTT
TACCGAGATTAGGGCTTTGAAAGGTGAAATACTCTTCTTCGAAAAACTCT
TCGTTTTCTCCTTCATTTAATTTTTTTATTTCAATTTTTCGATTTTTAAA
TTCTAAATAGGTAGGTTTAACAGGACATATGAAAAAAATTATACATTAAT
CTTTTTAAAATGCAGAAATTACCATTTAAGTTGGTGTAAAATCGAAAAAT
TGGGTATGTCCAGAGCCCTTTATGCTCCAATATGGCGTTAGAATAAACTC
CGCCACCAGGCGGAAAAAATTTTCGTTGGGTTGAGAAAAACAACCTTTTG
CAAGGTTAAAGGCTAGTCTGGAGTCGCTCATTATCCATTTAATACAACTT
ATAGAAAATCCAAAACTTGTAGTTGCAGTTTTTCAAATGGTAATGCCCGC
TGTTTTCCACGAGTAAGGATTTCCCGATGGGTTTCAACGGCGAATAATCA
GTATTTCTATTTCATTGCAGATACGTGTACTTATAACATCAACGTAACAA
CTTTGTGGCGACAAAATATCACCGGTAAAAACGTCGTCGTCACTGTTGTT
GATGATGGAGTTGAACACCGACATAAAGACATCGTCGGCAACTACGACGC
CGACGCAAGTTTTGATTACAACAGTAACGACAAAGATCCGACACCACGAC
CGACGAGTAATAACATCAATAAGCATGGCACAAGGTGAGATCTTCGTGAA
ATCACAAGGAATGGGTGTTTTGTTGATGGTCTTATGGCTAGAGTCAGAAT
TTTGAAAATATGAAAAACCCAAAGACCTTCTCTTAGTCTTTAATAAAACA
AATTTAGCTTTACCCTGTACCAATCTCTTCTTTTCTGAAAAGATAACGCG
GAGTAAGACAAAAACGGCAAAATTTTTAACAATATTAGAAAATCGCCAGT
GCGATGGGAAGAAGCTATAACTGTTATTTTATGCTCGTCTCCGTGTAACC
CAGGCTTTATTTTCGTCTCTGAAAGACGCCAGAGAATATTTAGCGCTATC
AGTAAGCATAAAAAAGATGGTCATACACCTAATGGAACAAGGTTGCTATT
AGACGCAATTTTTAAGTTTTATATTCAATTCAATTTAGGTGTGCTGGACA
AATTGCTGGCTCTGCCAATAACTCTGTTTGTGGTATTGGTGTCGCTTACA
ACGCTAAAATTGGTGGTATTCGAATGTTCGACGGCCCTTATGTTGACTCT
ATTGAAGCAGCCTCGTTTTCATTCAAACCACAACACATAGATATTTACAG
TGTTTCATGGGGGCCCGATGATAATGGAAGAACAGTAGATGGCCCACGTC
ACTTAGCAACCAAAGCTATCAAAAATGGTGAGAATATTTTAGCATTTGTC
CATGTTAGTTCCCTGTTAAATATTATGTGGCTGTTATGTGAAAAACATCA
ACTTTTCTTGGACTTCTTAGAATATTAAGTAGTTGGCACTGTTCAAAGCA
TCGAGAGAAGAGAACTTGAACCATTCAAAATATCGACAGTGGTTTTTTAA
TGAGGTTCCAGGCGAACAGATACAGTCCCATTTCACACCCAAAGCCACTC
GCACCACATTAAATCGTGAGCGCTATCAAAATCATAAGAAAAATAGTGCC
TAAGGACTCAGTTTGAGTTGGGCTGCAATCAATTGAAAGATCATATATTT
CACAATAAATATTTTTTCCTGTGTTAACTCACTCTCTGCAAGGAGCTTAA
TCCAAATCAACGATTTACATATCAATCATTTTCTACAGGAATTGAATCGG
GAAGAGGTGGGTTAGGATCAATTTACGTTTTCGCAACTGGGAACGGTGGC
AAGAACAAAGATCATTGTGGATGTGATGGTTTCGTTAGTATGGTTGAAAC
CATGGCAATTAGTTCTGTTGATTATTGTGGAAATATTCCGTTCTATGCAG
AGAGGTTGGTTTTTATTCTTTCGTATTCCGGTTTCATTGGTTTTTGTTGT
ACATTTAATTTTTAGCGGTCTAGGTAGCCATCCAATCGAACCACCTGCAA
TAAAAAATTGTATTAAACATTACACGAAAACATATAGAACAGTGGAGTCT
TCATAACTAGAGCCTCTATAACTCGAATGTCTTCAAAAAATCAAAACAAG
GGTGTAAACTGCACGAATAGATCCTATCTCACAGCCCCACTGGGACCCTT
CCCACTAGAAAAATTGGCCAAAATATCGTCCCCCGCCGGTGGAAAATTAT
CCTTCAATTTCTGTCCCCACTGAAAATAATCAAATAAAACAATCCTCACT
GCAAAACATTATGCTGTACTCATGAACTGTACTATATTTCCCATCCCCAG
TGAATTATCTGACTTAAAAACAAAAGAATTAAAATCCCCAGTCATAAAAC
ATATTGGAATATCAATTCCCATTGAGTTTCAGTCCGTTATTTTTATCCCC
ACTGGCTGTAAAAATCCTACCATCTCTGTGAGAAAGGGGTGTCTTAATAT
CATATTTTACTTACTGTCAATAGGTGCACAGGTATCATGGCGGTGACATA
TAGTTCTGGATCCAACCCCGATAAGAAAATCACCACAATAGATCTTGGTG
GCAAATGTACAAATTATTTCACCNCCCCGATAAGAAAATTACCACAATAG
ATCTTGGTGGCAAATGTACAAATTATTTCACCGGAACTTCGGCGTCTGCT
CCAGTAGCAGCTGGTATGATTTCTTCCATTAGTTTCCATTTCAAATCCGG
GGGGGTGGCACTCAAGGTAAACTACCAACTGTAGGTGTGGCCCTCAAGGC
TTTCCAAAGTGAAATTAGGGAAAATTCACCCTAAGGGTGTAAAAGTTTTT
TTCATTTCAATCTGTGAATTTTGATTTCAATCTGTGAGGTTAGATTCGCA
AAAGGCACTTATGAAATTATTACTAATTACTTATCCTTGGCAATTTCTTC
ATGGTCAAAATTTTTTCTAGTCAAAATTCAGAACATGATCTCTACTTTTA
GGAATTTTCGCACTGGCATTAGAAGTCAATAGCAATCTAACATGGCGTGA
TATGCAGCAGTTAGTTGTTCATTCATCCGATAAAATCAAGCCTCGGTTTC
AAACATGGATTACGAACGGTGCTGGACATCGAGTCAGTGAATATTTCGGG
TTCGGTTCACTAAACGCTGGTCGTTTAGTAGAAATGGCGAAAAACCCGAA
CTGGAAGACTCTAGCTCAACAACGTATTTGCAAATCTAATAACTTCGGTC
AAAATCAAGATATTATACGTAGTTCTACGTTAACTTTAAAATATAATACA
ACTGCTTGCTCCGAGAGTTCAAGTTACATATCTAAACTCGAGCATGTGAA
AATCTACGTCACACTTGATTCGCTACCACGTGGAGGGCTGGAAATTAGTG
TCCAATCTCCTTCAGGAACTATTGCACCTATACTGAGACCACGTGGTAAA
GATTTATATGCGAGTAGTTTTGATAATTGGGGATTTTTATCAGTTTTTTT
CTGGGATGAAGATCCAGTTGGTGAATGGACTATAAACATAAGACAAACGT
CAAGCCGTGCACGTACCGGAAAGTTATCGTCCGTATACCTTGAATGGTAC
GGAACTGTTGGGAATTCAACTGGGACATATACACCAAAACCGGAGGGCTC
TACAACAACACCGACAAAAGCAACACCTGTTATTGCACCGACAAGTGGGA
ATGGATTTCATTTCTCGACCGAATTGATATTGACAATCGTGTTCGCATCT
TTAATTGTTTTAGCCGTCGTAGCAGGAGTAATTTACAAATATCTCAAAGG
ACGAAGCCGAAGGAGACGAAACGGTCAAGTCGTGGCAGTAATGAACAACA
ATGGCCCTGTGCGACGTACGTTTTCGAATACGTCTTACATAGACGACTTA
TCGTTCACGGTCACGCAATCGCCTCCACTTTCACCTACAATGACTTTTTC
ACACCATCAGCCCGTTTTCGTTGAAGAAACAGATAGTAGAAAATGAGGGC
AGTGTATAGTTTATAAAAAACTCTAAGTGAAAGGTTTTTTATAGAGACTC
TGCTTAAAGTGACTCTTTAATCATTTTTTATAACTTTTTATGATATTTTT
TTTGTGTCAGTTGGGATGGAGAGACCGTAACATGTTGCTGTCTAAACTAA
TAGCATACCGTCACGAATCTAAAAATAGACATTGATTTTTATGTTTGACT
GAATTTCAATCCCATCACCCTTTGCGTTTATTACGCTTGCACGCAAATTA
CACTCAATTACAATGAAAAAGTAATAACTTTCACGACTTTTGAATTAAGA
CGAAAAGGATTGTGGGATTGAATTTCGGTCAAATGAGAGAAGTAATAATC
ATGACGTTTACACGACGAAGCGCTATTAGGTTATTTATGTTTCTTCCCTC
CAAATTATAATTTAGGCGAGACCAATTTAATTTGTTGTTCTACGGGCAGA
TCGTTAGCAAAATATGGGTCGGTCGGTCGGTAAAATAAGAACAGATTTTT
CATTTATCAGGGTTGGTAAAGTACCGAAAATGTTTTCCATAAAATATCTG
GTTCAAAAATTCACTTTTTTTTTATCTTCGATGATTATGATAAAATCTTA
GTGTATGGAATGCTTGATTTTCTAAATTTTTCAATTTCTTGAATTAATTT
TCAGCTTTATTCAAGTTTGATTCATACAAATAACTAGTGTGTAAAATATA
TTTTGGTGGAAATTCAATATTATTATTTTTTTGATTTTAGCAAAAATAGG
GTCGGTCGGTCGGGCCCGTAGAACAACAAATCAAATTGGTCTCGCCTTTC
ATTCACGGAGACAGCGTGTGCCTACATTTTTCCGACTAAAGTATTCTTCG
CTTTTCATCGATAAAAACTTTTTGTTAACGTTTCCAGACTGAATTTTTTG
ATCTAATATAGACAAAATGATAAAATTTGATAAAATAAAAGTATTTTATA
TTAAAGAATATTATATTTAT

Coding sequence (CDS) from alignment at scaffold_80:60420..67489-

>TCONS_00072627 ID=TCONS_00072627|Name=TCONS_00072627|organism=Clytia hemisphaerica|type=CDS|length=5820bp|location=Sequence derived from alignment at scaffold_80:60420..67489- (Clytia hemisphaerica)
GTGCACAGGTATCATGGCGGTGACATATAGTTCTGGATCCAACCCCGATA
AGAAAATCACCACAATAGATCTTGGTGGCAAATGTACAAATTATTTCACC
NCCCCGATAAGAAAATTACCACAATAGGAATTGAATCGGGAAGAGGTGGG
TTAGGATCAATTTACGTTTTCGCAACTGGGAACGGTGGCAAGAACAAAGA
TCATTGTGGATGTGATGGTTTCGTTAGTATGGTTGAAACCATGGCAATTA
GTTCTGTTGATTATTGTGGAAATATTCCGTTCTATGCAGAGAGGTGTGCT
GGACAAATTGCTGGCTCTGCCAATAACTCTGTTTGTGGTATTGGTGTCGC
TTACAACGCTAAAATTGGTGGTATTCGAATGTTCGACGGCCCTTATGTTG
ACTCTATTGAAGCAGCCTCGTTTTCATTCAAACCACAACACATAGATATT
TACAGTGTTTCATGGGGGCCCGATGATAATGGAAGAACAGTAGATGGCCC
ACGTCACTTAGCAACCAAAGCTATCAAAAATGATACGTGTACTTATAACA
TCAACGTAACAACTTTGTGGCGACAAAATATCACCGGTAAAAACGTCGTC
GTCACTGTTGTTGATGATGGAGTTGAACACCGACATAAAGACATCGTCGG
CAACTACGACGCCGACGCAAGTTTTGATTACAACAGTAACGACAAAGATC
CGACACCACGACCGACGAGTAATAACATCAATAAGCATGGCACAAGATGA
ATTTGAAATTTATAGGAATAGACTTGACATTTTTATTTATGATATTGTAT
TCGACTGCAAAGTCAGTTAATGGTTCTGAAGAAAGTCAAATTTACACGGA
TTTCCTAGCCTTAAAGGTTCAAGGTGGACATGAGAATGCAAGGCAAATAG
CTCAAGATTCTGGATTATATTATCATGGCCAAGTTGGAAGTTTGGATGAT
TGGTATATATTTAAACAGGTACCACCAACGGAAGGACAACATCGTAGAGT
AAGACGAAGCATTTTGAATGAGATTGTAGGAAAGCTATCGTCGTTTAAGA
ATGTTGATTTTGTGGATTCTCAAATCTTGCTGAAACGCAGTCGAAGGGAT
TTGGTATTTGACGATCCGTTGTATTCTCACCAATGGAATCTACATGGAAA
ATACAGCTCGACAGGTGCACAGGTATCATGGCGGTGACATATAGTTCTGG
ATCCAACCCCGATAAGAAAATCACCACAATAGATCTTGGTGGCAAATGTA
CAAATTATTTCACCNCCCCGATAAGAAAATTACCACAATAGGAATTGAAT
CGGGAAGAGGTGGGTTAGGATCAATTTACGTTTTCGCAACTGGGAACGGT
GGCAAGAACAAAGATCATTGTGGATGTGATGGTTTCGTTAGTATGGTTGA
AACCATGGCAATTAGTTCTGTTGATTATTGTGGAAATATTCCGTTCTATG
CAGAGAGGTGTGCTGGACAAATTGCTGGCTCTGCCAATAACTCTGTTTGT
GGTATTGGTGTCGCTTACAACGCTAAAATTGGTGGTATTCGAATGTTCGA
CGGCCCTTATGTTGACTCTATTGAAGCAGCCTCGTTTTCATTCAAACCAC
AACACATAGATATTTACAGTGTTTCATGGGGGCCCGATGATAATGGAAGA
ACAGTAGATGGCCCACGTCACTTAGCAACCAAAGCTATCAAAAATGATAC
GTGTACTTATAACATCAACGTAACAACTTTGTGGCGACAAAATATCACCG
GTAAAAACGTCGTCGTCACTGTTGTTGATGATGGAGTTGAACACCGACAT
AAAGACATCGTCGGCAACTACGACGCCGACGCAAGTTTTGATTACAACAG
TAACGACAAAGATCCGACACCACGACCGACGAGTAATAACATCAATAAGC
ATGGCACAAGATGAATTTGAAATTTATAGGAATAGACTTGACATTTTTAT
TTATGATATTGTATTCGACTGCAAAGTCAGTTAATGGTTCTGAAGAAAGT
CAAATTTACACGGATTTCCTAGCCTTAAAGGTTCAAGGTGGACATGAGAA
TGCAAGGCAAATAGCTCAAGATTCTGGATTATATTATCATGGCCAAGTTG
GAAGTTTGGATGATTGGTATATATTTAAACAGGTACCACCAACGGAAGGA
CAACATCGTAGAGTAAGACGAAGCATTTTGAATGAGATTGTAGGAAAGCT
ATCGTCGTTTAAGAATGTTGATTTTGTGGATTCTCAAATCTTGCTGAAAC
GCAGTCGAAGGGATTTGGTATTTGACGATCCGTTGTATTCTCACCAATGG
AATCTACATGGAAAATACAGCTCGACAGGTGCACAGGTATCATGGCGGTG
ACATATAGTTCTGGATCCAACCCCGATAAGAAAATCACCACAATAGATCT
TGGTGGCAAATGTACAAATTATTTCACCNCCCCGATAAGAAAATTACCAC
AATAGGAATTGAATCGGGAAGAGGTGGGTTAGGATCAATTTACGTTTTCG
CAACTGGGAACGGTGGCAAGAACAAAGATCATTGTGGATGTGATGGTTTC
GTTAGTATGGTTGAAACCATGGCAATTAGTTCTGTTGATTATTGTGGAAA
TATTCCGTTCTATGCAGAGAGGTGTGCTGGACAAATTGCTGGCTCTGCCA
ATAACTCTGTTTGTGGTATTGGTGTCGCTTACAACGCTAAAATTGGTGGT
ATTCGAATGTTCGACGGCCCTTATGTTGACTCTATTGAAGCAGCCTCGTT
TTCATTCAAACCACAACACATAGATATTTACAGTGTTTCATGGGGGCCCG
ATGATAATGGAAGAACAGTAGATGGCCCACGTCACTTAGCAACCAAAGCT
ATCAAAAATGATACGTGTACTTATAACATCAACGTAACAACTTTGTGGCG
ACAAAATATCACCGGTAAAAACGTCGTCGTCACTGTTGTTGATGATGGAG
TTGAACACCGACATAAAGACATCGTCGGCAACTACGACGCCGACGCAAGT
TTTGATTACAACAGTAACGACAAAGATCCGACACCACGACCGACGAGTAA
TAACATCAATAAGCATGGCACAAGATGAATTTGAAATTTATAGGAATAGA
CTTGACATTTTTATTTATGATATTGTATTCGACTGCAAAGTCAGTTAATG
GTTCTGAAGAAAGTCAAATTTACACGGATTTCCTAGCCTTAAAGGTTCAA
GGTGGACATGAGAATGCAAGGCAAATAGCTCAAGATTCTGGATTATATTA
TCATGGCCAAGTTGGAAGTTTGGATGATTGGTATATATTTAAACAGGTAC
CACCAACGGAAGGACAACATCGTAGAGTAAGACGAAGCATTTTGAATGAG
ATTGTAGGAAAGCTATCGTCGTTTAAGAATGTTGATTTTGTGGATTCTCA
AATCTTGCTGAAACGCAGTCGAAGGGATTTGGTATTTGACGATCCGTTGT
ATTCTCACCAATGGAATCTACATGGAAAATACAGCTCGACAGGTGCACAG
GTATCATGGCGGTGACATATAGTTCTGGATCCAACCCCGATAAGAAAATC
ACCACAATAGATCTTGGTGGCAAATGTACAAATTATTTCACCNCCCCGAT
AAGAAAATTACCACAATAGGAATTGAATCGGGAAGAGGTGGGTTAGGATC
AATTTACGTTTTCGCAACTGGGAACGGTGGCAAGAACAAAGATCATTGTG
GATGTGATGGTTTCGTTAGTATGGTTGAAACCATGGCAATTAGTTCTGTT
GATTATTGTGGAAATATTCCGTTCTATGCAGAGAGGTGTGCTGGACAAAT
TGCTGGCTCTGCCAATAACTCTGTTTGTGGTATTGGTGTCGCTTACAACG
CTAAAATTGGTGGTATTCGAATGTTCGACGGCCCTTATGTTGACTCTATT
GAAGCAGCCTCGTTTTCATTCAAACCACAACACATAGATATTTACAGTGT
TTCATGGGGGCCCGATGATAATGGAAGAACAGTAGATGGCCCACGTCACT
TAGCAACCAAAGCTATCAAAAATGATACGTGTACTTATAACATCAACGTA
ACAACTTTGTGGCGACAAAATATCACCGGTAAAAACGTCGTCGTCACTGT
TGTTGATGATGGAGTTGAACACCGACATAAAGACATCGTCGGCAACTACG
ACGCCGACGCAAGTTTTGATTACAACAGTAACGACAAAGATCCGACACCA
CGACCGACGAGTAATAACATCAATAAGCATGGCACAAGATGAATTTGAAA
TTTATAGGAATAGACTTGACATTTTTATTTATGATATTGTATTCGACTGC
AAAGTCAGTTAATGGTTCTGAAGAAAGTCAAATTTACACGGATTTCCTAG
CCTTAAAGGTTCAAGGTGGACATGAGAATGCAAGGCAAATAGCTCAAGAT
TCTGGATTATATTATCATGGCCAAGTTGGAAGTTTGGATGATTGGTATAT
ATTTAAACAGGTACCACCAACGGAAGGACAACATCGTAGAGTAAGACGAA
GCATTTTGAATGAGATTGTAGGAAAGCTATCGTCGTTTAAGAATGTTGAT
TTTGTGGATTCTCAAATCTTGCTGAAACGCAGTCGAAGGGATTTGGTATT
TGACGATCCGTTGTATTCTCACCAATGGAATCTACATGGAAAATACAGCT
CGACAGGTGCACAGGTATCATGGCGGTGACATATAGTTCTGGATCCAACC
CCGATAAGAAAATCACCACAATAGATCTTGGTGGCAAATGTACAAATTAT
TTCACCNCCCCGATAAGAAAATTACCACAATAGGAATTGAATCGGGAAGA
GGTGGGTTAGGATCAATTTACGTTTTCGCAACTGGGAACGGTGGCAAGAA
CAAAGATCATTGTGGATGTGATGGTTTCGTTAGTATGGTTGAAACCATGG
CAATTAGTTCTGTTGATTATTGTGGAAATATTCCGTTCTATGCAGAGAGG
TGTGCTGGACAAATTGCTGGCTCTGCCAATAACTCTGTTTGTGGTATTGG
TGTCGCTTACAACGCTAAAATTGGTGGTATTCGAATGTTCGACGGCCCTT
ATGTTGACTCTATTGAAGCAGCCTCGTTTTCATTCAAACCACAACACATA
GATATTTACAGTGTTTCATGGGGGCCCGATGATAATGGAAGAACAGTAGA
TGGCCCACGTCACTTAGCAACCAAAGCTATCAAAAATGATACGTGTACTT
ATAACATCAACGTAACAACTTTGTGGCGACAAAATATCACCGGTAAAAAC
GTCGTCGTCACTGTTGTTGATGATGGAGTTGAACACCGACATAAAGACAT
CGTCGGCAACTACGACGCCGACGCAAGTTTTGATTACAACAGTAACGACA
AAGATCCGACACCACGACCGACGAGTAATAACATCAATAAGCATGGCACA
AGATGAATTTGAAATTTATAGGAATAGACTTGACATTTTTATTTATGATA
TTGTATTCGACTGCAAAGTCAGTTAATGGTTCTGAAGAAAGTCAAATTTA
CACGGATTTCCTAGCCTTAAAGGTTCAAGGTGGACATGAGAATGCAAGGC
AAATAGCTCAAGATTCTGGATTATATTATCATGGCCAAGTTGGAAGTTTG
GATGATTGGTATATATTTAAACAGGTACCACCAACGGAAGGACAACATCG
TAGAGTAAGACGAAGCATTTTGAATGAGATTGTAGGAAAGCTATCGTCGT
TTAAGAATGTTGATTTTGTGGATTCTCAAATCTTGCTGAAACGCAGTCGA
AGGGATTTGGTATTTGACGATCCGTTGTATTCTCACCAATGGAATCTACA
TGGAAAATACAGCTCGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045079XLOC_045079Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072627-exon-scaffold_80-1575043694:66711..67489TCONS_00072627-exon-scaffold_80-1575043694:66711..67489Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1575043694:64656..64869TCONS_00072627-exon-scaffold_80-1575043694:64656..64869Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1575043694:64013..64251TCONS_00072627-exon-scaffold_80-1575043694:64013..64251Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1575043694:63436..63601TCONS_00072627-exon-scaffold_80-1575043694:63436..63601Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1575043694:62677..62866TCONS_00072627-exon-scaffold_80-1575043694:62677..62866Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1575043694:60420..62388TCONS_00072627-exon-scaffold_80-1575043694:60420..62388Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1510915933:66711..67489TCONS_00072627-exon-scaffold_80-1510915933:66711..67489Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1510915933:64656..64869TCONS_00072627-exon-scaffold_80-1510915933:64656..64869Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1510915933:64013..64251TCONS_00072627-exon-scaffold_80-1510915933:64013..64251Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1510915933:63436..63601TCONS_00072627-exon-scaffold_80-1510915933:63436..63601Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1510915933:62677..62866TCONS_00072627-exon-scaffold_80-1510915933:62677..62866Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1510915933:60420..62388TCONS_00072627-exon-scaffold_80-1510915933:60420..62388Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1491911889:66711..67489TCONS_00072627-exon-scaffold_80-1491911889:66711..67489Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1491911889:64656..64869TCONS_00072627-exon-scaffold_80-1491911889:64656..64869Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1491911889:64013..64251TCONS_00072627-exon-scaffold_80-1491911889:64013..64251Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1491911889:63436..63601TCONS_00072627-exon-scaffold_80-1491911889:63436..63601Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1491911889:62677..62866TCONS_00072627-exon-scaffold_80-1491911889:62677..62866Clytia hemisphaericaexon
TCONS_00072627-exon-scaffold_80-1491911889:60420..62388TCONS_00072627-exon-scaffold_80-1491911889:60420..62388Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072627-proteinTCONS_00072627-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_80supercontigscaffold_80:60420..67489 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.98771	4.27988	6.1675	7.62517	0.255017	0.286949	3.78549	3.94998	3.16547	5.68312	3.66515	3.6053	8.23957	7.35356	2.99251	4.33976	10.3839	10.5532	7.01507	11.0079	21.9197	19.7934	8.31894	10.2746	8.36485	9.26335	36.2869	38.7987	15.5246	17.655
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015500Peptidase_S8_subtilisin-rel
IPR000209Peptidase_S8/S53_dom
IPR032815S8_pro-domain
IPR023827Peptidase_S8_Asp-AS
IPR022398Peptidase_S8_His-AS
IPR034182Kexin/furin
IPR009020Peptidase/Inhibitor_I9
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
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BLAST of TCONS_00072627 vs. Swiss-Prot (Human)
Match: PCSK7 (Proprotein convertase subtilisin/kexin type 7 OS=Homo sapiens GN=PCSK7 PE=1 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 3.438e-100
Identity = 147/328 (44.82%), Postives = 203/328 (61.89%), Query Frame = 2 
Query:  527 GLYYHGQVGSLDDWYIFKQVPPTEGQHRRVRRSILNEIVGKLSSFKNVDFVDSQILLKRSRRDLVFDDPLYSHQWNLHGKYSSTDTCTYNINVTTLWRQNITGKNXXXXXXXXXXEHRHKDIVGNYDADASFDYNSNDKDPTPRPTSNNINKHGTRCAGQIAGSANNSVCGIGVAYNAKIGGIRMFDGPYVDSIEAASFSFKPQHIDIYSVSWGPDDNGRTVDGPRHLATKAIKNGIESGRGGLGSIYVFATGNGGKNKDHCGCDGFVSMVETMAISSVDYCGNIPFYAERCTGIMAVTYSSGSNPDKKITTIDL----GGKCTNYFT 1498
            GL   G++G L   Y+F Q  P   +      +I  ++   L+  + V +   Q LL+R++R + F+DP Y  QW+L+ + S       +INVT +W +N+TG+ V V VVDDGVEH  +DI  NY  + S+D NSND DP P P   N N HGTRCAG+IA   NNS C +GVAY ++I GIR+ DGP  DS+EA +F+   Q  DIYS SWGPDD+G+TVDGP  L   A+++G+ +GR G GSI+V A+GNGG++ D+C  DG+ + + T+ I +VD  G +PFYAE C  ++AVT+S G    + I T D     G  CT   T
Sbjct:   82 GLVNAGRIGELQGHYLFVQ--PAGHRPALEVEAIRQQVEAVLAGHEAVRWHSEQRLLRRAKRSVHFNDPKYPQQWHLNNRRSPGR----DINVTGVWERNVTGRGVTVVVVDDGVEHTIQDIAPNYSPEGSYDLNSNDPDPMPHPDVENGNHHGTRCAGEIAAVPNNSFCAVGVAYGSRIAGIRVLDGPLTDSMEAVAFNKHYQINDIYSCSWGPDDDGKTVDGPHQLGKAALQHGVIAGRQGFGSIFVVASGNGGQHNDNCNYDGYANSIYTVTIGAVDEEGRMPFYAEECASMLAVTFSGGDKMLRSIVTTDWDLQKGTGCTEGHT 403

HSP 2 Score: 125.176 bits (313), Expect = 3.438e-100
Identity = 81/224 (36.16%), Postives = 119/224 (53.12%), Query Frame = 1 
Query: 1531 GGKCTNYFTGTSASAPVAAGIFALALEVNSNLTWRDMQQLVVHSSDKIKPRFQTWITNGAGHRVSEYFGFGSLNAGRLVEMAKNPNWKTLAQQRICKSNNFGQNQDIIRS-STLTLKYNTTACSESSSYISKLEHVKIYVTLDSLPRGGLEISVQSPSGTIAPILRPRGKDLYASSFDNWGFLSVFFWDEDPVGEWTINIRQTSSRA-RTGKLSSVYLEWYGTV 2196
            G  CT   TGTSA+AP+AAG+ AL L+V   LTWRD+Q ++V ++ + + R   W+TN AG   S   GFG LNA RLV  AK   W ++       S    +N+ I +S  +L + +N +      S +  LEHV + V++    RG LE+ +  PSG ++ I  PR  D   + F++W F +V  W E   G + + IR     + + G L    L  YG+V
Sbjct:  395 GTGCTEGHTGTSAAAPLAAGMIALMLQVRPCLTWRDVQHIIVFTATRYEDRRAEWVTNEAGFSHSHQHGFGLLNAWRLVNAAK--IWTSVPYLASYVSPVLKENKAIPQSPRSLEVLWNVSRMDLEMSGLKTLEHVAVTVSITHPRRGSLELKLFCPSGMMSLIGAPRSMDSDPNGFNDWTFSTVRCWGERARGTYRLVIRDVGDESFQVGILRQWQLTLYGSV 616
The following BLAST results are available for this feature:
BLAST of TCONS_00072627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCSK73.438e-10044.82Proprotein convertase subtilisin/kexin type 7 OS=H... [more]
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