TCONS_00072611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072611
Unique NameTCONS_00072611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072611 ID=TCONS_00072611|Name=TCONS_00072611|organism=Clytia hemisphaerica|type=transcript|length=245bp
TGATCTCGCATCCCATCATTTATTCCGTCAGCAACCTCTCTCGCTCTAAA
GGGATACGTTGACCGATTGTTGCGAAACTGCTccgccgccattttgaaaa
ccaaaacaccACCCTAGGATTTGTCTGTAAGCAGACCTGATATCTAATAA
ATTCATTACTGCAGAGgactaagaccatgttcgcacgtgacggttccgtt
tcgctccaaaacggaatgaagccattctattggttagaagtgaca
Run BLAST on NCBI

transcript from alignment at scaffold_8:448640..448884

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072611 ID=TCONS_00072611|Name=TCONS_00072611|organism=Clytia hemisphaerica|type=transcript|length=245bp|location=Sequence derived from alignment at scaffold_8:448640..448884 (Clytia hemisphaerica)
tgtcacttctaaccaatagaatggcttcattccgttttggagcgaaacgg
aaccgtcacgtgcgaacatggtcttagtcCTCTGCAGTAATGAATTTATT
AGATATCAGGTCTGCTTACAGACAAATCCTAGGGTggtgttttggttttc
aaaatggcggcggAGCAGTTTCGCAACAATCGGTCAACGTATCCCTTTAG
AGCGAGAGAGGTTGCTGACGGAATAAATGATGGGATGCGAGATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045071XLOC_045071Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072611-exon-scaffold_8-1491911889:448640..448884TCONS_00072611-exon-scaffold_8-1491911889:448640..448884Clytia hemisphaericaexon
TCONS_00072611-exon-scaffold_8-1510915933:448640..448884TCONS_00072611-exon-scaffold_8-1510915933:448640..448884Clytia hemisphaericaexon
TCONS_00072611-exon-scaffold_8-1575043694:448640..448884TCONS_00072611-exon-scaffold_8-1575043694:448640..448884Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:448640..448884 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.830086	0	0.939866	4.96749	1.27687	0	2.48166	2.57243	4.38238	5.19864	0	2.50576	2.91599	0.591027	1.41405	0.516016	0.670504	1.9161	0	0	3.55589	1.79112	0	0.889047	6.23859	5.19033	3.41464	1.23082	0.921331	0.93869
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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