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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072609 ID=TCONS_00072609|Name=TCONS_00072609|organism=Clytia hemisphaerica|type=transcript|length=1547bp
GAAGGAAAGCGAAAGACGGTCAGATAAGAAAAGAAGAGAATCATTCGTAT
TTCGTATTGAACATTCCTGTCCTCTTTACTACTAAGTGTTATTAACTAAG
TTCAGTTTTTTGACATTATAGATATTTAACAAGCAGATAAAAGGTCAATC
AAATTTCAGATGCCAAAGCACTGTCAAAATGGAAGActatgaatacaaaa
caggatcaaaACAGGATGAACTTTTTTACAATGTTGATGCAGACCATGCG
CAACAACAAAATCACAAGATAAAAGGACGACAACAGACTAGAATCGACAA
TGATACCACTCATCGGCTATCAGACTTCGCAGACCCTGAAAAGGATATGA
TACAAGGGGTTCAACAGACTATAAAATGGGATGATTTACAAGGAGATTTG
AAAGCGATGGATATTAACGGAAACTTTGACGGATATGCTAGATTTAAAGA
AGAAGTCTTTGATTCTAAGAATCAGATCGCTAAGGGACTAATATTGGAAA
GTACGAGTCTGGAGAATGAACACTTGATGACTAAAACGTTCGGTAGTAGT
TTAATAAAAGACGATGTTATATTGCATGCAAGTATATCTATTGATAAAGG
TTCCACTCTTTCTGATGTTAAAATCACATTAGATAATCAAGTTAGTTCTT
ACGGAGATAACGATTCAGAATGTACTTCACATTCGAATGAACCCTTATTA
TCAACTGAACGAGATAATATTGATGAGATAAACGATGCAGACAAAACTCA
AGAAGCGGGGTGGGATAATCAAGTCAATTATTCCGGAGATATCGATTCAG
AACTTACATCACGACCATTATCATTAAATGGTGGAGATAATATTGATGAG
ATAGGTGATACAGACATAATTCCAGATTGGGGATTGAGAAATCAACTTAG
ATCTTCCTCGGATAATAATTTACAATTTACTTCACAAATGAATCAACCCT
CGTCCGAAAATGATGGAGATAATATTAATGATATGAGTGAAAAAGAAGCT
ACAGTCATAAATAActtagaagaaaatgaaaaaagaaacatttcaaACTC
AACTCCAAGTTCTACCAAATCAACTCCAAAAGATTTCATACCTCAAGATT
CAATTTATAATTTTATCCTTGGTTTAACATCAAGTCCTTCAATAATACAT
AACAATCCAACAacaattattcaaaatattagCCAAAACACTCAACGTAC
TTCAACAAAAATATACGACATCCAGAGACAAAGTAACAATAATTCTccac
aaatttcatcaaaatcatcttCAGATCTCCAAGTACCGAACTTGGTGAat
ctaaaaaaacaattaagGAAAAGTTCTTTAGTTCACGAAAGTCAATTAGC
ATTTGATTTTGACtcagaacatgttaagaatatgtATGCTCTATCTGAAT
GGACTTCAGATATTACTGATGTTCTTGGTCAGAAATCCATAAATTCGACT
GGTGATTCTTGTCTGGGTGGTATTGATGAAAGGAATTTTAGTTTAGATAG
Tctaaaattgtaattttttcaaatgtcgttgaataaaacaaaaagag Run BLAST on NCBI protein sequence of TCONS_00072609-protein >TCONS_00072609-protein ID=TCONS_00072609-protein|Name=TCONS_00072609-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp
MEDYEYKTGSKQDELFYNVDADHAQQQNHKIKGRQQTRIDNDTTHRLSDF
ADPEKDMIQGVQQTIKWDDLQGDLKAMDINGNFDGYARFKEEVFDSKNQI
AKGLILESTSLENEHLMTKTFGSSLIKDDVILHASISIDKGSTLSDVKIT
LDNQVSSYGDNDSECTSHSNEPLLSTERDNIDEINDADKTQEAGWDNQVN
YSGDIDSELTSRPLSLNGGDNIDEIGDTDIIPDWGLRNQLRSSSDNNLQF
TSQMNQPSSENDGDNINDMSEKEATVINNLEENEKRNISNSTPSSTKSTP
KDFIPQDSIYNFILGLTSSPSIIHNNPTTIIQNISQNTQRTSTKIYDIQR
QSNNNSPQISSKSSSDLQVPNLVNLKKQLRKSSLVHESQLAFDFDSEHVK
NMYALSEWTSDITDVLGQKSINSTGDSCLGGIDERNFSLDSLKL Run BLAST on NCBI transcript from alignment at scaffold_8:389611..391157 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072609 ID=TCONS_00072609|Name=TCONS_00072609|organism=Clytia hemisphaerica|type=transcript|length=1547bp|location=Sequence derived from alignment at scaffold_8:389611..391157 (Clytia hemisphaerica)
ctctttttgttttattcaacgacatttgaaaaaattacaattttagACTA
TCTAAACTAAAATTCCTTTCATCAATACCACCCAGACAAGAATCACCAGT
CGAATTTATGGATTTCTGACCAAGAACATCAGTAATATCTGAAGTCCATT
CAGATAGAGCATacatattcttaacatgttctgaGTCAAAATCAAATGCT
AATTGACTTTCGTGAACTAAAGAACTTTTCcttaattgtttttttagatT
CACCAAGTTCGGTACTTGGAGATCTGaagatgattttgatgaaatttgtg
gAGAATTATTGTTACTTTGTCTCTGGATGTCGTATATTTTTGTTGAAGTA
CGTTGAGTGTTTTGGctaatattttgaataattgtTGTTGGATTGTTATG
TATTATTGAAGGACTTGATGTTAAACCAAGGATAAAATTATAAATTGAAT
CTTGAGGTATGAAATCTTTTGGAGTTGATTTGGTAGAACTTGGAGTTGAG
TttgaaatgtttcttttttcattttcttctaagTTATTTATGACTGTAGC
TTCTTTTTCACTCATATCATTAATATTATCTCCATCATTTTCGGACGAGG
GTTGATTCATTTGTGAAGTAAATTGTAAATTATTATCCGAGGAAGATCTA
AGTTGATTTCTCAATCCCCAATCTGGAATTATGTCTGTATCACCTATCTC
ATCAATATTATCTCCACCATTTAATGATAATGGTCGTGATGTAAGTTCTG
AATCGATATCTCCGGAATAATTGACTTGATTATCCCACCCCGCTTCTTGA
GTTTTGTCTGCATCGTTTATCTCATCAATATTATCTCGTTCAGTTGATAA
TAAGGGTTCATTCGAATGTGAAGTACATTCTGAATCGTTATCTCCGTAAG
AACTAACTTGATTATCTAATGTGATTTTAACATCAGAAAGAGTGGAACCT
TTATCAATAGATATACTTGCATGCAATATAACATCGTCTTTTATTAAACT
ACTACCGAACGTTTTAGTCATCAAGTGTTCATTCTCCAGACTCGTACTTT
CCAATATTAGTCCCTTAGCGATCTGATTCTTAGAATCAAAGACTTCTTCT
TTAAATCTAGCATATCCGTCAAAGTTTCCGTTAATATCCATCGCTTTCAA
ATCTCCTTGTAAATCATCCCATTTTATAGTCTGTTGAACCCCTTGTATCA
TATCCTTTTCAGGGTCTGCGAAGTCTGATAGCCGATGAGTGGTATCATTG
TCGATTCTAGTCTGTTGTCGTCCTTTTATCTTGTGATTTTGTTGTTGCGC
ATGGTCTGCATCAACATTGTAAAAAAGTTCATCCTGTtttgatcctgttt
tgtattcatagTCTTCCATTTTGACAGTGCTTTGGCATCTGAAATTTGAT
TGACCTTTTATCTGCTTGTTAAATATCTATAATGTCAAAAAACTGAACTT
AGTTAATAACACTTAGTAGTAAAGAGGACAGGAATGTTCAATACGAAATA
CGAATGATTCTCTTCTTTTCTTATCTGACCGTCTTTCGCTTTCCTTC Coding sequence (CDS) from alignment at scaffold_8:389611..391157 >TCONS_00072609 ID=TCONS_00072609|Name=TCONS_00072609|organism=Clytia hemisphaerica|type=CDS|length=1335bp|location=Sequence derived from alignment at scaffold_8:389611..391157 (Clytia hemisphaerica)
ttacaattttagACTATCTAAACTAAAATTCCTTTCATCAATACCACCCA
GACAAGAATCACCAGTCGAATTTATGGATTTCTGACCAAGAACATCAGTA
ATATCTGAAGTCCATTCAGATAGAGCATacatattcttaacatgttctga
GTCAAAATCAAATGCTAATTGACTTTCGTGAACTAAAGAACTTTTCctta
attgtttttttagatTCACCAAGTTCGGTACTTGGAGATCTGaagatgat
tttgatgaaatttgtggAGAATTATTGTTACTTTGTCTCTGGATGTCGTA
TATTTTTGTTGAAGTACGTTGAGTGTTTTGGctaatattttgaataattg
tTGTTGGATTGTTATGTATTATTGAAGGACTTGATGTTAAACCAAGGATA
AAATTATAAATTGAATCTTGAGGTATGAAATCTTTTGGAGTTGATTTGGT
AGAACTTGGAGTTGAGTttgaaatgtttcttttttcattttcttctaagT
TATTTATGACTGTAGCTTCTTTTTCACTCATATCATTAATATTATCTCCA
TCATTTTCGGACGAGGGTTGATTCATTTGTGAAGTAAATTGTAAATTATT
ATCCGAGGAAGATCTAAGTTGATTTCTCAATCCCCAATCTGGAATTATGT
CTGTATCACCTATCTCATCAATATTATCTCCACCATTTAATGATAATGGT
CGTGATGTAAGTTCTGAATCGATATCTCCGGAATAATTGACTTGATTATC
CCACCCCGCTTCTTGAGTTTTGTCTGCATCGTTTATCTCATCAATATTAT
CTCGTTCAGTTGATAATAAGGGTTCATTCGAATGTGAAGTACATTCTGAA
TCGTTATCTCCGTAAGAACTAACTTGATTATCTAATGTGATTTTAACATC
AGAAAGAGTGGAACCTTTATCAATAGATATACTTGCATGCAATATAACAT
CGTCTTTTATTAAACTACTACCGAACGTTTTAGTCATCAAGTGTTCATTC
TCCAGACTCGTACTTTCCAATATTAGTCCCTTAGCGATCTGATTCTTAGA
ATCAAAGACTTCTTCTTTAAATCTAGCATATCCGTCAAAGTTTCCGTTAA
TATCCATCGCTTTCAAATCTCCTTGTAAATCATCCCATTTTATAGTCTGT
TGAACCCCTTGTATCATATCCTTTTCAGGGTCTGCGAAGTCTGATAGCCG
ATGAGTGGTATCATTGTCGATTCTAGTCTGTTGTCGTCCTTTTATCTTGT
GATTTTGTTGTTGCGCATGGTCTGCATCAACATTGTAAAAAAGTTCATCC
TGTtttgatcctgttttgtattcatagTCTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072609-exon-scaffold_8-1491911889:389611..391157 | TCONS_00072609-exon-scaffold_8-1491911889:389611..391157 | Clytia hemisphaerica | exon |
| TCONS_00072609-exon-scaffold_8-1510915933:389611..391157 | TCONS_00072609-exon-scaffold_8-1510915933:389611..391157 | Clytia hemisphaerica | exon |
| TCONS_00072609-exon-scaffold_8-1575043694:389611..391157 | TCONS_00072609-exon-scaffold_8-1575043694:389611..391157 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:389611..391157 . |
Blast
The following BLAST results are available for this feature:
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