TCONS_00072607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072607
Unique NameTCONS_00072607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length966

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072607 ID=TCONS_00072607|Name=TCONS_00072607|organism=Clytia hemisphaerica|type=transcript|length=966bp
CGAGTGTTGGTTCGAAGCGCGAAAAAGATGGGGTTGGACTGTGTGTGGAA
CTAGGTGTTGAGTGAGCATCGGGTTTTGAACTAGTGCCTGAGAATTCTTT
GATTTCGTCNGCTGAGTGAGCATCGGGTTTTGAACTAGTGCTTGAGAATT
CTTTGATTTCGTCAACATTACCGTCTTCACCGGGTGGTGTTGACTGGGTG
TCCTCGAATTGCTCAATTTTGTCAGAGTTTTCCCCCTCATCTATCTGAAG
TTTCCCAGAGTCAGCGTCTGAGAAGGTTTCGTCAGACTGCGTCAGAGATA
ATTGTGTCCCCTTCACTTTCGTATTTTTGAGAGAGTGTTCGAGTTGGGCT
TTCCTCATTGTAGTCAAGTTCCACTTCTCCCTCCTCCTCCCTCTGGTCAA
TTTCCTCTAGTGGTTGTTGTTCCAAGGGAGTTTCAGGGATCACCGGGGTT
GCCATGTTTTCGAGATTTGGTTCCACTAAGTTAACTTCCGGATTAGACTC
AGGGAGGATCTTCCCTTCAAGGGCAGACTCGGCCTCCTGGACACCCTCCC
CCAGCCCAGGTGGGTCATCCTGTTTTGGTGATTCCGTTTTCCCTCTTTTG
GAGATCGTCTCCTGGTCATCTGAAAAGTCTCATCTTTGGCGGATAAGGCC
TTTCCCTTCCTCCTTTCTAACTTCCCGGTCTTGGGGGATGATTTGTTCAA
TGATTTTCGTGAAGTCAATTTTCGCCTCACCGGAGGGTGAGACTTGTTGA
TCTTCGGTTCCGGTGTCCATACCGACGTCCGGTTCACTCGTTTTCATAGG
TGAAGCGttggttttgttttttcctATCTTTGATTCGGTAATTTCCGCTT
TTTTGGAAGATCCTATCTTTGATTCggtgttttgagatttttgaggtTTT
TCTTTTGTTGCGTTTTAGTGTTGACCTTTGAAGAAGTGTCTTGTTGATCG
AGAAATTGTTGCGGAG
Run BLAST on NCBI

protein sequence of TCONS_00072607-protein

>TCONS_00072607-protein ID=TCONS_00072607-protein|Name=TCONS_00072607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MRKAQLEHSLKNTKVKGTQLSLTQSDETFSDADSGKLQIDEGENSDKIEQ
FEDTQSTPPGEDGNVDEIKEFSSTSSKPDAHSXDEIKEFSGTSSKPDAHS
TPSSTHSPTPSFSRFEPTL
Run BLAST on NCBI

transcript from alignment at scaffold_8:344411..345376

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072607 ID=TCONS_00072607|Name=TCONS_00072607|organism=Clytia hemisphaerica|type=transcript|length=966bp|location=Sequence derived from alignment at scaffold_8:344411..345376 (Clytia hemisphaerica)
CTCCGCAACAATTTCTCGATCAACAAGACACTTCTTCAAAGGTCAACACT
AAAACGCAACAAAAGAAAAacctcaaaaatctcaaaacaccGAATCAAAG
ATAGGATCTTCCAAAAAAGCGGAAATTACCGAATCAAAGATaggaaaaaa
caaaaccaaCGCTTCACCTATGAAAACGAGTGAACCGGACGTCGGTATGG
ACACCGGAACCGAAGATCAACAAGTCTCACCCTCCGGTGAGGCGAAAATT
GACTTCACGAAAATCATTGAACAAATCATCCCCCAAGACCGGGAAGTTAG
AAAGGAGGAAGGGAAAGGCCTTATCCGCCAAAGATGAGACTTTTCAGATG
ACCAGGAGACGATCTCCAAAAGAGGGAAAACGGAATCACCAAAACAGGAT
GACCCACCTGGGCTGGGGGAGGGTGTCCAGGAGGCCGAGTCTGCCCTTGA
AGGGAAGATCCTCCCTGAGTCTAATCCGGAAGTTAACTTAGTGGAACCAA
ATCTCGAAAACATGGCAACCCCGGTGATCCCTGAAACTCCCTTGGAACAA
CAACCACTAGAGGAAATTGACCAGAGGGAGGAGGAGGGAGAAGTGGAACT
TGACTACAATGAGGAAAGCCCAACTCGAACACTCTCTCAAAAATACGAAA
GTGAAGGGGACACAATTATCTCTGACGCAGTCTGACGAAACCTTCTCAGA
CGCTGACTCTGGGAAACTTCAGATAGATGAGGGGGAAAACTCTGACAAAA
TTGAGCAATTCGAGGACACCCAGTCAACACCACCCGGTGAAGACGGTAAT
GTTGACGAAATCAAAGAATTCTCAAGCACTAGTTCAAAACCCGATGCTCA
CTCAGCNGACGAAATCAAAGAATTCTCAGGCACTAGTTCAAAACCCGATG
CTCACTCAACACCTAGTTCCACACACAGTCCAACCCCATCTTTTTCGCGC
TTCGAACCAACACTCG

Coding sequence (CDS) from alignment at scaffold_8:344411..345376

>TCONS_00072607 ID=TCONS_00072607|Name=TCONS_00072607|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_8:344411..345376 (Clytia hemisphaerica)
ATGAGGAAAGCCCAACTCGAACACTCTCTCAAAAATACGAAAGTGAAGGG
GACACAATTATCTCTGACGCAGTCTGACGAAACCTTCTCAGACGCTGACT
CTGGGAAACTTCAGATAGATGAGGGGGAAAACTCTGACAAAATTGAGCAA
TTCGAGGACACCCAGTCAACACCACCCGGTGAAGACGGTAATGTTGACGA
AATCAAAGAATTCTCAAGCACTAGTTCAAAACCCGATGCTCACTCAGCNG
ACGAAATCAAAGAATTCTCAGGCACTAGTTCAAAACCCGATGCTCACTCA
ACACCTAGTTCCACACACAGTCCAACCCCATCTTTTTCGCGCTTCGAACC
AACACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045067XLOC_045067Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072607-proteinTCONS_00072607-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072607-exon-scaffold_8-1491911889:344411..345376TCONS_00072607-exon-scaffold_8-1491911889:344411..345376Clytia hemisphaericaexon
TCONS_00072607-exon-scaffold_8-1510915933:344411..345376TCONS_00072607-exon-scaffold_8-1510915933:344411..345376Clytia hemisphaericaexon
TCONS_00072607-exon-scaffold_8-1575043694:344411..345376TCONS_00072607-exon-scaffold_8-1575043694:344411..345376Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:344411..345376 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0789038	0.019909	0.504745	0.31063	0.0752785	0.240713	0.0927894	0.177658	0.102068	0.29375	0	0	0.110254	0.271654	0.109709	0	0.498109	0.0527398	0.169201	0.178852	0.192657	0.138787	0.224453	0.209361	0.171205	0.187954	0.351058	0.701505	0.132894	0.613929
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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