TCONS_00072605 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072605
Unique NameTCONS_00072605
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072605 ID=TCONS_00072605|Name=TCONS_00072605|organism=Clytia hemisphaerica|type=transcript|length=366bp
GCCGTCGAGTTCCCATGCGAATCCCAAAAAGGTTCGAAAAATATGATTGA
TCGGTACATGATGGTATCCGCTTTTGAGGTCGAAAGTGATTAACAAATCG
TTCTGGTCGATTAACTCTGaggcttgttttaaattttcGTATTTGAATTT
GTTTGGTTTGATGAATTTATTGACGTGTCTGAGATCTAATACCAACCtaa
gcttagaatttctttaaaTTGAAATGACTGTCTTTTGATTAAAGTACATC
AAACACAATGAATTCAATTGTTcataaaagataaaataataaagaaagTC
GTTTGAATTATAACGCTTCAATTTTTCAACACGAGTAAGCAACTTGACTG
TGAAATTTAAAGTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_8:325683..326048

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072605 ID=TCONS_00072605|Name=TCONS_00072605|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at scaffold_8:325683..326048 (Clytia hemisphaerica)
ATCACTTTAAATTTCACAGTCAAGTTGCTTACTCGTGTTGAAAAATTGAA
GCGTTATAATTCAAACGActttctttattattttatcttttatgAACAAT
TGAATTCATTGTGTTTGATGTACTTTAATCAAAAGACAGTCATTTCAAtt
taaagaaattctaagcttaGGTTGGTATTAGATCTCAGACACGTCAATAA
ATTCATCAAACCAAACAAATTCAAATACgaaaatttaaaacaagcctCAG
AGTTAATCGACCAGAACGATTTGTTAATCACTTTCGACCTCAAAAGCGGA
TACCATCATGTACCGATCAATCATATTTTTCGAACCTTTTTGGGATTCGC
ATGGGAACTCGACGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045065XLOC_045065Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072605-exon-scaffold_8-1491911889:325683..326048TCONS_00072605-exon-scaffold_8-1491911889:325683..326048Clytia hemisphaericaexon
TCONS_00072605-exon-scaffold_8-1510915933:325683..326048TCONS_00072605-exon-scaffold_8-1510915933:325683..326048Clytia hemisphaericaexon
TCONS_00072605-exon-scaffold_8-1575043694:325683..326048TCONS_00072605-exon-scaffold_8-1575043694:325683..326048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:325683..326048 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.903	9.84882	7.42529	2.63486	0.609474	0	0.581048	0.815955	0.571269	0.661076	0	0.752483	6.65639	9.82881	6.68938	5.53636	1.44058	1.83276	0.269406	0.7541	0.752979	0.639411	6.49362	7.90082	2.42617	2.1653	1.84027	2.31479	6.09336	4.41851
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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