TCONS_00072602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072602
Unique NameTCONS_00072602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072602 ID=TCONS_00072602|Name=TCONS_00072602|organism=Clytia hemisphaerica|type=transcript|length=565bp
GACATGTGCAAGATGGAACATTACAAATTTGTGTTTTGTATGCAGCTGTC
CCGTTTACACTGCTACATACACTGAAAACCCAGTTGAGAGGGCTATTTTC
GTCGTATGATCTTAGTTTCATGGTGTCTTTTAAAGAATGCGTGGTAGCGA
TTCGGCGCTTTAACATATCGTCCAACCGTGTCTTTTTGGTGGGCGGGTTA
CATCCTACATTTTCTGTGGTCGGAGTTCTTTTGATGCCAGGTTCACGTCG
CGTTACACCAAAGTCCAAGATGTCCTGGCCAAATCTATTGGCCGCTTCTA
TCTCTCTATTATCTCTTCTCTGACTCGATTCGACAACCGACGGTCCACGC
CCTCTGTTGTAATTTCCTTTTTCCAGGTCTTTCATGTCTTGAGCCAGCAA
TATGTTGTCTTTGACGTCAAACATACACGGCTCGACCAACGATAGACCTA
CGTTCTTTTTGTTTATCCAACCGGCATGCACCACTTCCAAGAGGTTGGAC
CTGGGTGCCTGAATTGTGGTGAATACACGGAATATAAGATGTTTTCTATT
ATCCCACCATGCAAG
Run BLAST on NCBI

protein sequence of TCONS_00072602-protein

>TCONS_00072602-protein ID=TCONS_00072602-protein|Name=TCONS_00072602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
LAWWDNRKHLIFRVFTTIQAPRSNLLEVVHAGWINKKNVGLSLVEPCMFD
VKDNILLAQDMKDLEKGNYNRGRGPSVVESSQRRDNREIEAANRFGQDIL
DFGVTRREPGIKRTPTTENVGCNPPTKKTRLDDMLKRRIATTHSLKDTMK
LRSYDENSPLNWVFSVCSSVNGTAAYKTQICNVPSCTC
Run BLAST on NCBI

transcript from alignment at scaffold_8:321505..322069

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072602 ID=TCONS_00072602|Name=TCONS_00072602|organism=Clytia hemisphaerica|type=transcript|length=565bp|location=Sequence derived from alignment at scaffold_8:321505..322069 (Clytia hemisphaerica)
CTTGCATGGTGGGATAATAGAAAACATCTTATATTCCGTGTATTCACCAC
AATTCAGGCACCCAGGTCCAACCTCTTGGAAGTGGTGCATGCCGGTTGGA
TAAACAAAAAGAACGTAGGTCTATCGTTGGTCGAGCCGTGTATGTTTGAC
GTCAAAGACAACATATTGCTGGCTCAAGACATGAAAGACCTGGAAAAAGG
AAATTACAACAGAGGGCGTGGACCGTCGGTTGTCGAATCGAGTCAGAGAA
GAGATAATAGAGAGATAGAAGCGGCCAATAGATTTGGCCAGGACATCTTG
GACTTTGGTGTAACGCGACGTGAACCTGGCATCAAAAGAACTCCGACCAC
AGAAAATGTAGGATGTAACCCGCCCACCAAAAAGACACGGTTGGACGATA
TGTTAAAGCGCCGAATCGCTACCACGCATTCTTTAAAAGACACCATGAAA
CTAAGATCATACGACGAAAATAGCCCTCTCAACTGGGTTTTCAGTGTATG
TAGCAGTGTAAACGGGACAGCTGCATACAAAACACAAATTTGTAATGTTC
CATCTTGCACATGTC

Coding sequence (CDS) from alignment at scaffold_8:321505..322069

>TCONS_00072602 ID=TCONS_00072602|Name=TCONS_00072602|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_8:321505..322069 (Clytia hemisphaerica)
CTTGCATGGTGGGATAATAGAAAACATCTTATATTCCGTGTATTCACCAC
AATTCAGGCACCCAGGTCCAACCTCTTGGAAGTGGTGCATGCCGGTTGGA
TAAACAAAAAGAACGTAGGTCTATCGTTGGTCGAGCCGTGTATGTTTGAC
GTCAAAGACAACATATTGCTGGCTCAAGACATGAAAGACCTGGAAAAAGG
AAATTACAACAGAGGGCGTGGACCGTCGGTTGTCGAATCGAGTCAGAGAA
GAGATAATAGAGAGATAGAAGCGGCCAATAGATTTGGCCAGGACATCTTG
GACTTTGGTGTAACGCGACGTGAACCTGGCATCAAAAGAACTCCGACCAC
AGAAAATGTAGGATGTAACCCGCCCACCAAAAAGACACGGTTGGACGATA
TGTTAAAGCGCCGAATCGCTACCACGCATTCTTTAAAAGACACCATGAAA
CTAAGATCATACGACGAAAATAGCCCTCTCAACTGGGTTTTCAGTGTATG
TAGCAGTGTAAACGGGACAGCTGCATACAAAACACAAATTTGTAATGTTC
CATCTTGCACATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045062XLOC_045062Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072602-exon-scaffold_8-1491911889:321505..322069TCONS_00072602-exon-scaffold_8-1491911889:321505..322069Clytia hemisphaericaexon
TCONS_00072602-exon-scaffold_8-1510915933:321505..322069TCONS_00072602-exon-scaffold_8-1510915933:321505..322069Clytia hemisphaericaexon
TCONS_00072602-exon-scaffold_8-1575043694:321505..322069TCONS_00072602-exon-scaffold_8-1575043694:321505..322069Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072602-proteinTCONS_00072602-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:321505..322069 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.199313	0.272629	0	0	1.49329	1.19967	0.923614	1.30427	0	0	0.130943	0.451556	0.60497	0.68524	0.459459	0.255298	0.666185	0.276346	2.51369	1.47933	1.37096	0.990339	0.176479	1.11733	0.998531	2.09798	0.428938	0	0.384081	0.20232
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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