TCONS_00072601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072601
Unique NameTCONS_00072601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072601 ID=TCONS_00072601|Name=TCONS_00072601|organism=Clytia hemisphaerica|type=transcript|length=246bp
GAATCAGAAGAATCTGATAAGTCTGCCTCTGAGGATGAGTGTCCAACCAA
TTCGTTAACTTTTTGTTCCATGTCGGACTGGGTTGGAATAGATATGGCAT
CCACAGGAGTATCTGatttattaaaaacattttccatcCTGAGTTTTTTG
TGTGATTCTGAAATATGAAAATCAGTTTTGCGTTTCTTCCATGTTGAAGA
AATAGTAGAAGTTGATACAGTATgttttgatgatgatgatttggCT
Run BLAST on NCBI

transcript from alignment at scaffold_8:298795..299040

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072601 ID=TCONS_00072601|Name=TCONS_00072601|organism=Clytia hemisphaerica|type=transcript|length=246bp|location=Sequence derived from alignment at scaffold_8:298795..299040 (Clytia hemisphaerica)
AGccaaatcatcatcatcaaaacATACTGTATCAACTTCTACTATTTCTT
CAACATGGAAGAAACGCAAAACTGATTTTCATATTTCAGAATCACACAAA
AAACTCAGgatggaaaatgtttttaataaatCAGATACTCCTGTGGATGC
CATATCTATTCCAACCCAGTCCGACATGGAACAAAAAGTTAACGAATTGG
TTGGACACTCATCCTCAGAGGCAGACTTATCAGATTCTTCTGATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045061XLOC_045061Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072601-exon-scaffold_8-1491911889:298795..299040TCONS_00072601-exon-scaffold_8-1491911889:298795..299040Clytia hemisphaericaexon
TCONS_00072601-exon-scaffold_8-1510915933:298795..299040TCONS_00072601-exon-scaffold_8-1510915933:298795..299040Clytia hemisphaericaexon
TCONS_00072601-exon-scaffold_8-1575043694:298795..299040TCONS_00072601-exon-scaffold_8-1575043694:298795..299040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:298795..299040 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10545	0	0.109775	0	1.10167	0.870555	1.05029	0	0	0	0	0.544068	2.81975	4.12966	1.39163	1.68973	0	2.19488	6.31174	5.14167	1.63623	0	0	2.61747	0	0	0	0.311814	0.906724	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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