TCONS_00072589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072589
Unique NameTCONS_00072589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072589 ID=TCONS_00072589|Name=TCONS_00072589|organism=Clytia hemisphaerica|type=transcript|length=408bp
GTGAATGTAAAGTGACAATTAATTATTTAGATGGTGTTACTGTAGGAGTA
TTATCACAACTCTGTTGGAGTGAAAACCTTTACTACAGTTTCTACTACAG
AAAATGTGcaaagttaaaaacaaaaaagtaaatataCTTCCCTAGCTAGC
tggaaaaaattgatgatggAAACCAACAGCAGTGGTGAGCCAAACACAGC
CACAACAGTAATATGAACAACAAGAAGTCTTGCAAGAGCAGATAATCCAA
ACACAAAAACAATTGTGCAAAATAATATGTTGATAAGATATACGAATTAT
GTGTTGATTAGATACTAACAGACTATAATAAATCAGATCCTCTTCTTTTT
CTCAAAATTTGTTAAAAAATTTCAAAAAAAATGAAACAATCAATCAAACC
AGTGACAG
Run BLAST on NCBI

transcript from alignment at scaffold_8:150346..150753

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072589 ID=TCONS_00072589|Name=TCONS_00072589|organism=Clytia hemisphaerica|type=transcript|length=408bp|location=Sequence derived from alignment at scaffold_8:150346..150753 (Clytia hemisphaerica)
CTGTCACTGGTTTGATTGATTGTTTCATTTTTTTTGAAATTTTTTAACAA
ATTTTGAGAAAAAGAAGAGGATCTGATTTATTATAGTCTGTTAGTATCTA
ATCAACACATAATTCGTATATCTTATCAACATATTATTTTGCACAATTGT
TTTTGTGTTTGGATTATCTGCTCTTGCAAGACTTCTTGTTGTTCATATTA
CTGTTGTGGCTGTGTTTGGCTCACCACTGCTGTTGGTTTccatcatcaat
tttttccaGCTAGCTAGGGAAGtatatttacttttttgtttttaactttg
CACATTTTCTGTAGTAGAAACTGTAGTAAAGGTTTTCACTCCAACAGAGT
TGTGATAATACTCCTACAGTAACACCATCTAAATAATTAATTGTCACTTT
ACATTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045049XLOC_045049Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072589-exon-scaffold_8-1491911889:150346..150753TCONS_00072589-exon-scaffold_8-1491911889:150346..150753Clytia hemisphaericaexon
TCONS_00072589-exon-scaffold_8-1510915933:150346..150753TCONS_00072589-exon-scaffold_8-1510915933:150346..150753Clytia hemisphaericaexon
TCONS_00072589-exon-scaffold_8-1575043694:150346..150753TCONS_00072589-exon-scaffold_8-1575043694:150346..150753Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:150346..150753 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.53484	0.173851	0.201858	0.394973	0.961683	0.379967	1.14604	1.07291	1.05163	0.744352	0.722487	0.593668	0.711411	0.615673	0.101233	0.325917	0.803005	0.274351	0.568547	0.198315	0.172371	0	0	0	2.67976	6.14989	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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