TCONS_00072588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072588
Unique NameTCONS_00072588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072588 ID=TCONS_00072588|Name=TCONS_00072588|organism=Clytia hemisphaerica|type=transcript|length=318bp
TTATAAAAGCAACAGAGTCTTACTTAAATGTATCATGATAGACTTGAAAC
GACATACCGTTCCGTTCTTTTCTCAGATGTATGGTGAGAAATTAATTTTG
ACAGATCAATAGATTTCTATTCTGTTCTGTTTACAAATACTTAACTTCCT
GTTTTATGTGAAACTTAGGATGTGAACTTCACCAAAACAAGCATACTTGA
TCTGGTAGTGATACGTATTGAACAAATTTACTTAAATTTTCActtaattg
tattttaagcatttttaatttttaaatgtcTGTTTGAATTTTACTTTACT
AAATTGCTTCAATAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_8:141542..141859

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072588 ID=TCONS_00072588|Name=TCONS_00072588|organism=Clytia hemisphaerica|type=transcript|length=318bp|location=Sequence derived from alignment at scaffold_8:141542..141859 (Clytia hemisphaerica)
ATTTTATTGAAGCAATTTAGTAAAGTAAAATTCAAACAgacatttaaaaa
ttaaaaatgcttaaaatacaattaagTGAAAATTTAAGTAAATTTGTTCA
ATACGTATCACTACCAGATCAAGTATGCTTGTTTTGGTGAAGTTCACATC
CTAAGTTTCACATAAAACAGGAAGTTAAGTATTTGTAAACAGAACAGAAT
AGAAATCTATTGATCTGTCAAAATTAATTTCTCACCATACATCTGAGAAA
AGAACGGAACGGTATGTCGTTTCAAGTCTATCATGATACATTTAAGTAAG
ACTCTGTTGCTTTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045048XLOC_045048Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072588-exon-scaffold_8-1491911889:141542..141859TCONS_00072588-exon-scaffold_8-1491911889:141542..141859Clytia hemisphaericaexon
TCONS_00072588-exon-scaffold_8-1510915933:141542..141859TCONS_00072588-exon-scaffold_8-1510915933:141542..141859Clytia hemisphaericaexon
TCONS_00072588-exon-scaffold_8-1575043694:141542..141859TCONS_00072588-exon-scaffold_8-1575043694:141542..141859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:141542..141859 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.650865	0.317348	0	0.360491	18.4323	3.81476	7.9495	6.65883	1.09694	1.35874	0	2.16736	1.08217	2.2477	0.739165	2.1814	3.17591	2.7544	1.38377	0.362003	5.03434	2.76252	1.86567	2.71387	0.349402	1.24733	4.46232	1.42869	1.44482	0.73602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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