TCONS_00072586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072586
Unique NameTCONS_00072586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072586 ID=TCONS_00072586|Name=TCONS_00072586|organism=Clytia hemisphaerica|type=transcript|length=324bp
ATCTCTTCAAGTCTTTGAATTAGACTAATAGTACTGGGGCTCCATAACGC
TGAGCAATATTCCAGTATGGGGATCACAAGTGATTTATAGAGAGTGATCA
TGGTATGTGTAGAGCGGGAAGTGAAGGTTCGTAATATCCAAGAAATGatg
tttttggctttttcaattATTGATTCAATTTGTTGTTTAAATAGACAATC
ATTGGACATAATAACTCCCAGGTCTTTAACATATTCCTTTCCTTCAATTT
TATCTCCTGATGGTGAGGTATAGTgagattcatttttgatttctgtATTT
GAGCCATAACGTAGcagttcaaat
Run BLAST on NCBI

protein sequence of TCONS_00072586-protein

>TCONS_00072586-protein ID=TCONS_00072586-protein|Name=TCONS_00072586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
FELLRYGSNTEIKNESHYTSPSGDKIEGKEYVKDLGVIMSNDCLFKQQIE
SIIEKAKNIISWILRTFTSRSTHTMITLYKSLVIPILEYCSALWSPSTIS
LIQRLEE
Run BLAST on NCBI

transcript from alignment at scaffold_8:62321..62644

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072586 ID=TCONS_00072586|Name=TCONS_00072586|organism=Clytia hemisphaerica|type=transcript|length=324bp|location=Sequence derived from alignment at scaffold_8:62321..62644 (Clytia hemisphaerica)
atttgaactgCTACGTTATGGCTCAAATacagaaatcaaaaatgaatctc
ACTATACCTCACCATCAGGAGATAAAATTGAAGGAAAGGAATATGTTAAA
GACCTGGGAGTTATTATGTCCAATGATTGTCTATTTAAACAACAAATTGA
ATCAATaattgaaaaagccaaaaacatCATTTCTTGGATATTACGAACCT
TCACTTCCCGCTCTACACATACCATGATCACTCTCTATAAATCACTTGTG
ATCCCCATACTGGAATATTGCTCAGCGTTATGGAGCCCCAGTACTATTAG
TCTAATTCAAAGACTTGAAGAGAT

Coding sequence (CDS) from alignment at scaffold_8:62321..62644

>TCONS_00072586 ID=TCONS_00072586|Name=TCONS_00072586|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_8:62321..62644 (Clytia hemisphaerica)
tttgaactgCTACGTTATGGCTCAAATacagaaatcaaaaatgaatctcA
CTATACCTCACCATCAGGAGATAAAATTGAAGGAAAGGAATATGTTAAAG
ACCTGGGAGTTATTATGTCCAATGATTGTCTATTTAAACAACAAATTGAA
TCAATaattgaaaaagccaaaaacatCATTTCTTGGATATTACGAACCTT
CACTTCCCGCTCTACACATACCATGATCACTCTCTATAAATCACTTGTGA
TCCCCATACTGGAATATTGCTCAGCGTTATGGAGCCCCAGTACTATTAGT
CTAATTCAAAGACTTGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045046XLOC_045046Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072586-proteinTCONS_00072586-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072586-exon-scaffold_8-1491911889:62321..62644TCONS_00072586-exon-scaffold_8-1491911889:62321..62644Clytia hemisphaericaexon
TCONS_00072586-exon-scaffold_8-1510915933:62321..62644TCONS_00072586-exon-scaffold_8-1510915933:62321..62644Clytia hemisphaericaexon
TCONS_00072586-exon-scaffold_8-1575043694:62321..62644TCONS_00072586-exon-scaffold_8-1575043694:62321..62644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:62321..62644 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23392	3.91062	5.35989	5.12569	5.82404	1.97239	4.02787	2.97034	2.5995	1.60995	2.50025	1.65122	2.40088	0.655267	1.43277	1.12787	0	1.89885	0.983763	1.71573	2.98256	3.49149	1.41479	1.28625	1.32481	4.9772	2.96091	1.80569	2.05433	1.39536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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