TCONS_00072582 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072582
Unique NameTCONS_00072582
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072582 ID=TCONS_00072582|Name=TCONS_00072582|organism=Clytia hemisphaerica|type=transcript|length=669bp
CGTAACAGTTCTGTTTGTAGTTTATCCCTTCGGGCTTTCCTTTCGGATTC
TTCGGAGGTTCGACCCAACCCTTTTCTGCACATGTCCAATACATTCTCCT
TCTTTTAACAGTATAGTGTCCTTGTATGGGTCTGCCTCAACAATATTGGG
GTGGGATTTTGAGTCATCATCTCCTAGGTAGGTTGTGTATCTTAAATTCC
TCTTTTCGATGGATCGGTTGTAGATGGTTAAAGTTACACTTGTTTCCATT
GCGGCAGCTGACCCTTCATGGTTGACATTACAAACATGAGTTTTCTTCCA
ATCATCATAATGACATGAATTGCATTTCTTAGTTTTGACTTCGACATCAA
CTATTTTGTCATTTGTTCGCTCTATACACGAAACAATTCCATTCAGCGAT
GCGTAACCACGGCGCTGCCACGATCCATCAAATGAAGCGACGATATCTTT
TGGACCTTGATTATTGTTATCATTGTGATCAGTTGAAATATTAGCAGCTG
CTTTTGCCATGCTTTCCTCACCAGCTTGTACATAAAGAGGATGTAATTTG
TTCAAAATACAATCATATGCTGCGGACCTGACTGCGGCATATTCATGTGT
CTCGCAAAGTTCTTCTGCCGCAGCTTGGACAGTTTTCATTTGAAAgttcg
aaaattttcaacaaaattg
Run BLAST on NCBI

protein sequence of TCONS_00072582-protein

>TCONS_00072582-protein ID=TCONS_00072582-protein|Name=TCONS_00072582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MKTVQAAAEELCETHEYAAVRSAAYDCILNKLHPLYVQAGEESMAKAAAN
ISTDHNDNNNQGPKDIVASFDGSWQRRGYASLNGIVSCIERTNDKIVDVE
VKTKKCNSCHYDDWKKTHVCNVNHEGSAAAMETSVTLTIYNRSIEKRNLR
YTTYLGDDDSKSHPNIVEADPYKDTILLKEGECIGHVQKRVGSNLRRIRK
ESPKG
Run BLAST on NCBI

transcript from alignment at scaffold_8:29679..30347

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072582 ID=TCONS_00072582|Name=TCONS_00072582|organism=Clytia hemisphaerica|type=transcript|length=669bp|location=Sequence derived from alignment at scaffold_8:29679..30347 (Clytia hemisphaerica)
caattttgttgaaaattttcgaacTTTCAAATGAAAACTGTCCAAGCTGC
GGCAGAAGAACTTTGCGAGACACATGAATATGCCGCAGTCAGGTCCGCAG
CATATGATTGTATTTTGAACAAATTACATCCTCTTTATGTACAAGCTGGT
GAGGAAAGCATGGCAAAAGCAGCTGCTAATATTTCAACTGATCACAATGA
TAACAATAATCAAGGTCCAAAAGATATCGTCGCTTCATTTGATGGATCGT
GGCAGCGCCGTGGTTACGCATCGCTGAATGGAATTGTTTCGTGTATAGAG
CGAACAAATGACAAAATAGTTGATGTCGAAGTCAAAACTAAGAAATGCAA
TTCATGTCATTATGATGATTGGAAGAAAACTCATGTTTGTAATGTCAACC
ATGAAGGGTCAGCTGCCGCAATGGAAACAAGTGTAACTTTAACCATCTAC
AACCGATCCATCGAAAAGAGGAATTTAAGATACACAACCTACCTAGGAGA
TGATGACTCAAAATCCCACCCCAATATTGTTGAGGCAGACCCATACAAGG
ACACTATACTGTTAAAAGAAGGAGAATGTATTGGACATGTGCAGAAAAGG
GTTGGGTCGAACCTCCGAAGAATCCGAAAGGAAAGCCCGAAGGGATAAAC
TACAAACAGAACTGTTACG

Coding sequence (CDS) from alignment at scaffold_8:29679..30347

>TCONS_00072582 ID=TCONS_00072582|Name=TCONS_00072582|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_8:29679..30347 (Clytia hemisphaerica)
ATGAAAACTGTCCAAGCTGCGGCAGAAGAACTTTGCGAGACACATGAATA
TGCCGCAGTCAGGTCCGCAGCATATGATTGTATTTTGAACAAATTACATC
CTCTTTATGTACAAGCTGGTGAGGAAAGCATGGCAAAAGCAGCTGCTAAT
ATTTCAACTGATCACAATGATAACAATAATCAAGGTCCAAAAGATATCGT
CGCTTCATTTGATGGATCGTGGCAGCGCCGTGGTTACGCATCGCTGAATG
GAATTGTTTCGTGTATAGAGCGAACAAATGACAAAATAGTTGATGTCGAA
GTCAAAACTAAGAAATGCAATTCATGTCATTATGATGATTGGAAGAAAAC
TCATGTTTGTAATGTCAACCATGAAGGGTCAGCTGCCGCAATGGAAACAA
GTGTAACTTTAACCATCTACAACCGATCCATCGAAAAGAGGAATTTAAGA
TACACAACCTACCTAGGAGATGATGACTCAAAATCCCACCCCAATATTGT
TGAGGCAGACCCATACAAGGACACTATACTGTTAAAAGAAGGAGAATGTA
TTGGACATGTGCAGAAAAGGGTTGGGTCGAACCTCCGAAGAATCCGAAAG
GAAAGCCCGAAGGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045042XLOC_045042Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072582-proteinTCONS_00072582-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072582-exon-scaffold_8-1491911889:29679..30347TCONS_00072582-exon-scaffold_8-1491911889:29679..30347Clytia hemisphaericaexon
TCONS_00072582-exon-scaffold_8-1510915933:29679..30347TCONS_00072582-exon-scaffold_8-1510915933:29679..30347Clytia hemisphaericaexon
TCONS_00072582-exon-scaffold_8-1575043694:29679..30347TCONS_00072582-exon-scaffold_8-1575043694:29679..30347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:29679..30347 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0771255	0	0.0873255	0	0.728057	0.328754	0.297471	0.742637	0.0649922	0.161007	2.73485	0.154096	0.102588	0.319614	0	0.187992	0.0578978	0	0.409931	0.0857926	0.298277	0.109117	0	0	0.496838	1.40415	0.211509	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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