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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072580 ID=TCONS_00072580|Name=TCONS_00072580|organism=Clytia hemisphaerica|type=transcript|length=1292bp
CTTCTTTCTTGTTCTAAAACAGACCAATATTGTATTTGTTTTCAAACACT
GAACATAACTTGAGTGTGGTTTGATAGCTTCATAAAAGCTCAAGTAAATC
GTTATTGTATCGACTCAGCTGGGGGATATATTTCAAAACACTGGTCTCAA
TATTTCCGGACAGTTTAATAAGAAGGAGAGAACAATCCGGGATTCATCAA
GTTATCGATTCTCCTTCATACATTTGAACAAGTCAAGGAGATATCAAAGA
AAGGGCACAATGAATATTTCCATTATTTCTATTGGTCATTTTGTGTTGAC
ATTCGTTGGAGGATCAGCAAACCTTATCGCTATATGGTGCCTTTACAAAG
AAACTATGTCATTTTCATCCATTGAAGATCATAATATCTTCATTTTATCT
CTTGCTATATCTGATCTTTTGGTTAGTTTGGTATATCAGCCATTATCAGG
AATTCAGTTTGTTATCGGGAGACCTATTCAAGCATCGGTCATTCGTTATA
TATCAGGAGTTCTACTGTCCATGTCTTTATTGAATCTCAGTTTGCTTTCA
CTGGAACGTGTCATCAAGATTACTTTACCGAACAAACATGATTCTTGGat
ggaaaaagggaaaattatAAAGTTGATTTTGATGTGCTGGGTATTGGAAG
GAATCATTTATTCCACATCGTTCTTCTATCCAACCCTGTTCGGGATCACA
ATAATGTTGCATGTTGTAGGAACTCTTCTTATTCTGATCATAAGTTATAC
TTTGGTCTACCGCCAGGAGAGAAGATCAACAAAGATTTTAGCATCCTTCA
GTACTTCTAAATGTCAGAGCAGTAATCCTTCCAACTCCCAAGCGTCTAAC
TCAACCATCAAACAAACGAAGAATCGAGAACGGAGGTTGATTAAAAACGT
TTTAACCTTGTTATTGACACATTTCGTGTTTGTTGTTATAATCTTAATTA
TAGTGGGCAGCGCCATATCAACCGCTGATGATCCTAAGCAAAGAGACTTT
GCATTCTTCCTTGGTGTTTTAATTGCTACGGTGAATCCAAGTTGTGTTAA
TCCTATCTTTTATGTTTTCCGGACGaaaaagaacagaaagagaGTTCTTA
ATATATTTTGCTGTCGAAAGAAAAGAGTTGTTCCTGAGTAACGTTCAATA
GAAACAACACCGGTGTCGTTGcatgaaactttttttcctgtCGTGCTGTT
ACGTCAGGTGCATTGgacgagaaaatttttttctcgagaataaactttcg
cgaatcaagacgtaaattttcacatgaaaaaatggtttAGAG Run BLAST on NCBI protein sequence of TCONS_00072580-protein >TCONS_00072580-protein ID=TCONS_00072580-protein|Name=TCONS_00072580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MNISIISIGHFVLTFVGGSANLIAIWCLYKETMSFSSIEDHNIFILSLAI
SDLLVSLVYQPLSGIQFVIGRPIQASVIRYISGVLLSMSLLNLSLLSLER
VIKITLPNKHDSWMEKGKIIKLILMCWVLEGIIYSTSFFYPTLFGITIML
HVVGTLLILIISYTLVYRQERRSTKILASFSTSKCQSSNPSNSQASNSTI
KQTKNRERRLIKNVLTLLLTHFVFVVIILIIVGSAISTADDPKQRDFAFF
LGVLIATVNPSCVNPIFYVFRTKKNRKRVLNIFCCRKKRVVPE Run BLAST on NCBI transcript from alignment at scaffold_8:12669..13960 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072580 ID=TCONS_00072580|Name=TCONS_00072580|organism=Clytia hemisphaerica|type=transcript|length=1292bp|location=Sequence derived from alignment at scaffold_8:12669..13960 (Clytia hemisphaerica)
CTCTaaaccattttttcatgtgaaaatttacgtcttgattcgcgaaagtt
tattctcgagaaaaaaattttctcgtcCAATGCACCTGACGTAACAGCAC
GacaggaaaaaaagtttcatgCAACGACACCGGTGTTGTTTCTATTGAAC
GTTACTCAGGAACAACTCTTTTCTTTCGACAGCAAAATATATTAAGAACt
ctctttctgttctttttCGTCCGGAAAACATAAAAGATAGGATTAACACA
ACTTGGATTCACCGTAGCAATTAAAACACCAAGGAAGAATGCAAAGTCTC
TTTGCTTAGGATCATCAGCGGTTGATATGGCGCTGCCCACTATAATTAAG
ATTATAACAACAAACACGAAATGTGTCAATAACAAGGTTAAAACGTTTTT
AATCAACCTCCGTTCTCGATTCTTCGTTTGTTTGATGGTTGAGTTAGACG
CTTGGGAGTTGGAAGGATTACTGCTCTGACATTTAGAAGTACTGAAGGAT
GCTAAAATCTTTGTTGATCTTCTCTCCTGGCGGTAGACCAAAGTATAACT
TATGATCAGAATAAGAAGAGTTCCTACAACATGCAACATTATTGTGATCC
CGAACAGGGTTGGATAGAAGAACGATGTGGAATAAATGATTCCTTCCAAT
ACCCAGCACATCAAAATCAACTTTataattttccctttttccatCCAAGA
ATCATGTTTGTTCGGTAAAGTAATCTTGATGACACGTTCCAGTGAAAGCA
AACTGAGATTCAATAAAGACATGGACAGTAGAACTCCTGATATATAACGA
ATGACCGATGCTTGAATAGGTCTCCCGATAACAAACTGAATTCCTGATAA
TGGCTGATATACCAAACTAACCAAAAGATCAGATATAGCAAGAGATAAAA
TGAAGATATTATGATCTTCAATGGATGAAAATGACATAGTTTCTTTGTAA
AGGCACCATATAGCGATAAGGTTTGCTGATCCTCCAACGAATGTCAACAC
AAAATGACCAATAGAAATAATGGAAATATTCATTGTGCCCTTTCTTTGAT
ATCTCCTTGACTTGTTCAAATGTATGAAGGAGAATCGATAACTTGATGAA
TCCCGGATTGTTCTCTCCTTCTTATTAAACTGTCCGGAAATATTGAGACC
AGTGTTTTGAAATATATCCCCCAGCTGAGTCGATACAATAACGATTTACT
TGAGCTTTTATGAAGCTATCAAACCACACTCAAGTTATGTTCAGTGTTTG
AAAACAAATACAATATTGGTCTGTTTTAGAACAAGAAAGAAG Coding sequence (CDS) from alignment at scaffold_8:12669..13960 >TCONS_00072580 ID=TCONS_00072580|Name=TCONS_00072580|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_8:12669..13960 (Clytia hemisphaerica)
TTACTCAGGAACAACTCTTTTCTTTCGACAGCAAAATATATTAAGAACtc
tctttctgttctttttCGTCCGGAAAACATAAAAGATAGGATTAACACAA
CTTGGATTCACCGTAGCAATTAAAACACCAAGGAAGAATGCAAAGTCTCT
TTGCTTAGGATCATCAGCGGTTGATATGGCGCTGCCCACTATAATTAAGA
TTATAACAACAAACACGAAATGTGTCAATAACAAGGTTAAAACGTTTTTA
ATCAACCTCCGTTCTCGATTCTTCGTTTGTTTGATGGTTGAGTTAGACGC
TTGGGAGTTGGAAGGATTACTGCTCTGACATTTAGAAGTACTGAAGGATG
CTAAAATCTTTGTTGATCTTCTCTCCTGGCGGTAGACCAAAGTATAACTT
ATGATCAGAATAAGAAGAGTTCCTACAACATGCAACATTATTGTGATCCC
GAACAGGGTTGGATAGAAGAACGATGTGGAATAAATGATTCCTTCCAATA
CCCAGCACATCAAAATCAACTTTataattttccctttttccatCCAAGAA
TCATGTTTGTTCGGTAAAGTAATCTTGATGACACGTTCCAGTGAAAGCAA
ACTGAGATTCAATAAAGACATGGACAGTAGAACTCCTGATATATAACGAA
TGACCGATGCTTGAATAGGTCTCCCGATAACAAACTGAATTCCTGATAAT
GGCTGATATACCAAACTAACCAAAAGATCAGATATAGCAAGAGATAAAAT
GAAGATATTATGATCTTCAATGGATGAAAATGACATAGTTTCTTTGTAAA
GGCACCATATAGCGATAAGGTTTGCTGATCCTCCAACGAATGTCAACACA
AAATGACCAATAGAAATAATGGAAATATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072580-exon-scaffold_8-1491911889:12669..13960 | TCONS_00072580-exon-scaffold_8-1491911889:12669..13960 | Clytia hemisphaerica | exon |
| TCONS_00072580-exon-scaffold_8-1510915933:12669..13960 | TCONS_00072580-exon-scaffold_8-1510915933:12669..13960 | Clytia hemisphaerica | exon |
| TCONS_00072580-exon-scaffold_8-1575043694:12669..13960 | TCONS_00072580-exon-scaffold_8-1575043694:12669..13960 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:12669..13960 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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