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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072574 ID=TCONS_00072574|Name=TCONS_00072574|organism=Clytia hemisphaerica|type=transcript|length=5831bpRun BLAST on NCBI transcript from alignment at scaffold_8:457720..488028- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072574 ID=TCONS_00072574|Name=TCONS_00072574|organism=Clytia hemisphaerica|type=transcript|length=30309bp|location=Sequence derived from alignment at scaffold_8:457720..488028- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072574 vs. Swiss-Prot (Human)
Match: C19L1 (CWF19-like protein 1 OS=Homo sapiens GN=CWF19L1 PE=1 SV=2) HSP 1 Score: 375.941 bits (964), Expect = 5.173e-114 Identity = 224/538 (41.64%), Postives = 315/538 (58.55%), Query Frame = 1
Query: 88 LKILVCGSVDGNXXXXXXXXXXXXXXNGPFEMVLCCGQFFSDDPSCE-QNWKKILNKKPSVDVPVYILGPTTKVQEKYFQSEKIEDGQEIYDNVLHLGRKGIFKTSSGLSIAYVSGNE--NKTQNTLSFTKFDIDKLKEQIMRDDEFNGVDILMTSSWPK-----GMDSVLRVEEAPXXXXXXXXXXXXKPRYHFTCHHERYFEAPPYRNHEILQGEQRHVSRFVSMAPIVNENNQKGLYAFSITPMSICDRNELIKQPEVVIPCPYKK------INKTKENASEEENQQFFFRTDD---RKRKHGSNDEXXX--XXXXXXXXXLSADCWFCLGSKNVEKHLVISVGEQCYVALAKGALNEDHILICPIAHHNATSVLPDDVRMEMEKYKDCVRKMFEKEKKTIVMFERNFYTQHLQLQV--VGVRKSLEENIETSFEECAQEYCMELMRIPEEKDLTEMVAITTPYFYAEVGEETRFLHKVKGKMPLQFGREVLAGENVLDMTDRVDWKSCKLNREEEVSQAKAFRKRFQPYDFNFN 1638
L++L CG V+G F F ++ +IQKK+G F+++LC G FF E + +K + K P + Y+LG + KYFQ DG E+ +N+ +LGRKGIF SSGL I Y+SG E N+ SF+ D+ L+ + +F GVDIL+TS WPK G S + S L+S L LKPRYHF + Y+E PYRNH ILQ +H +RF+++A + N +K LYAFSI PM + D EL+KQP V PY+K I K EE QFFF ++ RKR D + K P+ PP CWFCL S VEKHLV+++G CY+ALAKG L++DH+LI PI H+ + L +V E+EKYK +R+ F+ K V+FERN+ + HLQLQV V + S ++I+ +F AQE +EL+ IPE D+ ++ YFY E+ + H++K PLQFGREVLA E +L++ D+ DW+ C++++E+E + A+ FRK F+PYDF +
Sbjct: 6 LRLLACGDVEGKFDILFNRVQAIQKKSGNFDLLLCVGNFFGSTQDAEWEEYKTGIKKAP---IQTYVLGANNQETVKYFQDA---DGCELAENITYLGRKGIFTGSSGLQIVYLSGTESLNEPVPGYSFSPKDVSSLRMMLCTTSQFKGVDILLTSPWPKCVGNFGNSSGEVDTKKCGSALVSSLATGLKPRYHFAALEKTYYERLPYRNHIILQENAQHATRFIALANVGNPEKKKYLYAFSIVPMKLMDAAELVKQPPDVTENPYRKSGQEASIGKQILAPVEESACQFFFDLNEKQGRKRSSTGRDSKSSPHPKQPRKPPQPPGPCWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEKYKATLRRFFKSRGKWCVVFERNYKSHHLQLQVIPVPISCSTTDDIKDAFITQAQEQQIELLEIPEHSDIKQIAQPGAAYFYVELDTGEKLFHRIKKNFPLQFGREVLASEAILNVPDKSDWRQCQISKEDEETLARRFRKDFEPYDFTLD 537 The following BLAST results are available for this feature:
BLAST of TCONS_00072574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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