Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072570 ID=TCONS_00072570|Name=TCONS_00072570|organism=Clytia hemisphaerica|type=transcript|length=1930bpRun BLAST on NCBI transcript from alignment at scaffold_8:418823..443395- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072570 ID=TCONS_00072570|Name=TCONS_00072570|organism=Clytia hemisphaerica|type=transcript|length=24573bp|location=Sequence derived from alignment at scaffold_8:418823..443395- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00072570 vs. Swiss-Prot (Human)
Match: MCU (Calcium uniporter protein, mitochondrial OS=Homo sapiens GN=MCU PE=1 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 1.383e-79 Identity = 121/264 (45.83%), Postives = 185/264 (70.08%), Query Frame = 3 Query: 303 AGDAACAFRNGLVVLTLPMPSRNEKCEFTLRPVSHTVKDLVTFAQEEDKGIDRIAVYSMEGVRISHATPIDILMQQDFQIKVNDKSFDILPPKPEQFPVVLDDQMSSTKNLISQLYTDMNVDEYKDNHERALKVHLETLKNELSPLEHQKALIDERAAKRTTFLVWAGLGYMAWQFGFLARLTWWEYSWDIMEPVTYFVTYGTSLIMYAYFVLTREDCNYPEVKRRSHLLNFYRETEKQKFNVNSYNAKKEMVAKLEEELELLN 1094 + D ++NGL V+++ +PSR E+C+FTL+P+S +V + QEED+GIDR+A+YS +GVR++ +T ID+L+ DF++ +ND ++ + PPK + ++ K L+ QLYT + +++++ N ER L LE LK +L+PLE + I +A KRTT ++W GL YMA QFG LARLTWWEYSWDIMEPVTYF+TYG+++ MYAYFV+TR++ YPE + R +LL F++ +K +F++ YN K+ +A+ E +L+ L Sbjct: 72 SDDVTVVYQNGLPVISVRLPSRRERCQFTLKPISDSVGVFLRQLQEEDRGIDRVAIYSPDGVRVAASTGIDLLLLDDFKLVINDLTYHVRPPKRDLLSHENAATLNDVKTLVQQLYTTLCIEQHQLNKERELIERLEDLKEQLAPLEKVRIEISRKAEKRTTLVLWGGLAYMATQFGILARLTWWEYSWDIMEPVTYFITYGSAMAMYAYFVMTRQEYVYPEARDRQYLLFFHKGAKKSRFDLEKYNQLKDAIAQAEMDLKRLR 335 The following BLAST results are available for this feature:
BLAST of TCONS_00072570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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