Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072569 ID=TCONS_00072569|Name=TCONS_00072569|organism=Clytia hemisphaerica|type=transcript|length=1513bpRun BLAST on NCBI protein sequence of TCONS_00072569-protein >TCONS_00072569-protein ID=TCONS_00072569-protein|Name=TCONS_00072569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp MFQFRHVRKLRQSIAILKKTTTATHQHQVPCMSNVLQRFMSQNAAGDAACRun BLAST on NCBI transcript from alignment at scaffold_8:412040..443395- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072569 ID=TCONS_00072569|Name=TCONS_00072569|organism=Clytia hemisphaerica|type=transcript|length=31356bp|location=Sequence derived from alignment at scaffold_8:412040..443395- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_8:412040..443395- >TCONS_00072569 ID=TCONS_00072569|Name=TCONS_00072569|organism=Clytia hemisphaerica|type=CDS|length=8910bp|location=Sequence derived from alignment at scaffold_8:412040..443395- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00072569 vs. Swiss-Prot (Human)
Match: MCU (Calcium uniporter protein, mitochondrial OS=Homo sapiens GN=MCU PE=1 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 6.117e-81 Identity = 124/274 (45.26%), Postives = 188/274 (68.61%), Query Frame = 3 Query: 303 AGDAACAFRNGLVVLTLPMPSRNEKCEFTLRPVSHTVKDLVTFAQEEDKGIDRIAVYSMEGVRISHATPIDILMQQDFQIKVNDKSFDILPPKPEQFPVVLDDQMSSTKNLISQLYTDMNVDEYKDNHERALKVHLETLKNELSPLEHQKALIDERAAKRTTFLVWAGLGYMAWQFGFLARLTWWEYSWDIMEPVTYFVTYGTSLIMYAYFVLTREDCNYPEVKRRSHLLNFYRETEKQKFNVNSYNAKKEMVAKLEEELELLNTYPLAADFKL 1124 + D ++NGL V+++ +PSR E+C+FTL+P+S +V + QEED+GIDR+A+YS +GVR++ +T ID+L+ DF++ +ND ++ + PPK + ++ K L+ QLYT + +++++ N ER L LE LK +L+PLE + I +A KRTT ++W GL YMA QFG LARLTWWEYSWDIMEPVTYF+TYG+++ MYAYFV+TR++ YPE + R +LL F++ +K +F++ YN K+ +A+ E +L+ L PL L Sbjct: 72 SDDVTVVYQNGLPVISVRLPSRRERCQFTLKPISDSVGVFLRQLQEEDRGIDRVAIYSPDGVRVAASTGIDLLLLDDFKLVINDLTYHVRPPKRDLLSHENAATLNDVKTLVQQLYTTLCIEQHQLNKERELIERLEDLKEQLAPLEKVRIEISRKAEKRTTLVLWGGLAYMATQFGILARLTWWEYSWDIMEPVTYFITYGSAMAMYAYFVMTRQEYVYPEARDRQYLLFFHKGAKKSRFDLEKYNQLKDAIAQAEMDLKRLRD-PLQVHLPL 344 The following BLAST results are available for this feature:
BLAST of TCONS_00072569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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