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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072563 ID=TCONS_00072563|Name=TCONS_00072563|organism=Clytia hemisphaerica|type=transcript|length=1075bp
TTGTCAGCACCTCATGCGTAGAAATGTTCCTGATGCAGTGATATCAAATT
TCAGAGTCAACAAGatggACAAAGAATCATGCTGGGGTGCGACTGACATG
GAGCTAAAAGAATTAGGATTGGTCCTGAGAGGAGATATTATTAGTTTGAA
ATCCTTTTGTTTTAACGCAAATCAGAACCCTGCTTCAACCTTAAGTGTCG
CCATGAGTCGGGCAGTAAAGGACAGAgtaagaaaaaactcaaaaaactca
aaaaatgtaaattctAGTTGGTTTCACTACAGTGATGGGCAGAATCGATA
TGTGAATGTTCGTGGTGATAAAGGAGGAGGTCCCCAAGTAATTCCATTAC
CGCTGGATGCGACAAGTACCATTGTATTGGAGGAACTCTGCAAACGATTC
ATACCCAATGGAAGGTGTTTTTTCGGATGTAATGAGGAATTGAAAATTGC
CATTGGAACGTCCAAAAATTCATTGTTGGAAGATCCTGAGACATTCATac
taaaaaatttcattaataatagaaatttaaaatcaaaggtTTACTTGCAC
CTGATGACCCGAAAGAAATCATTTCGTACAATGATGTTGGAGGATGTTTA
TAGTCCATGGCCAAATACTTCAACTCCATCCTCCCATACTCCTCGAGAAG
CTCAATATCCTCCCCAAGGTTCTATGTCTCCAATATCCAGTAGTTCCAGT
AGAGTTCCAGTACCAGCCCTCAACGAAGaaagtttatttatttcaaacAA
TAATGCAAANGAGCAAAAAgtaattgaaaatataagaCTTGATTGAATAA
tcgaaattgaaaaagtttgagtaactaaaaactaaaaaatgaaaaaatcc
aagatggccGCCAGGACCATGTGCTGACCTAAACCTAAAGTGACTTGAGG
CAAAGACACACCTATATGAAAACAAAAGGAATGAGAAGCAAAAGCAAACA
AGAAAGCTTACCAGCTGCCATATGGAATCTTGCTGAgacaggcacgacgg
aagctttttatatctggtacggcgaatgaggaaatttaagcgattttata
gcgatttgaccgacgaagaggaaaa Run BLAST on NCBI protein sequence of TCONS_00072563-protein >TCONS_00072563-protein ID=TCONS_00072563-protein|Name=TCONS_00072563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
CQHLMRRNVPDAVISNFRVNKMDKESCWGATDMELKELGLVLRGDIISLK
SFCFNANQNPASTLSVAMSRAVKDRVRKNSKNSKNVNSSWFHYSDGQNRY
VNVRGDKGGGPQVIPLPLDATSTIVLEELCKRFIPNGRCFFGCNEELKIA
IGTSKNSLLEDPETFILKNFINNRNLKSKVYLHLMTRKKSFRTMMLEDVY
SPWPNTSTPSSHTPREAQYPPQGSMSPISSSSSRVPVPALNEESLFISNN
NAXEQKVIENIRLD Run BLAST on NCBI transcript from alignment at scaffold_8:273970..275515- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072563 ID=TCONS_00072563|Name=TCONS_00072563|organism=Clytia hemisphaerica|type=transcript|length=1546bp|location=Sequence derived from alignment at scaffold_8:273970..275515- (Clytia hemisphaerica)
TTGTCAGCACCTCATGCGTAGAAATGTTCCTGATGCAGTGATATCAAATT
TCAGAGTCAACAAGGTATTATCTCTTGTGGTTTATTCATGTCTAACTTTA
AAAATCAATACTGTTATATATTTATAACTAGTAGAGGGTGTAAACCTGTC
TAGTAAAACTTCTCAAATCTGACCCCAGATCTGGACAGTGTGAAGAAATA
ATTGTGGAAATGCCTTCACATAAGGTCCGGTGAATTCATTATTTTGATCA
GCTATTCATTTGAGCTTTTTTTTCTCTCTTCATTTTCTCTTCCTCTTTTT
TGACAGTCTTCATCAGGTAGGTCCATTCCGTATTATATTCTTCGTTTTTC
CTAACTGGAAATGACTTTATTTGATCAGCAAGCTTTGAGTCAGATTGGTC
TGGCGACAAACATGACAAACAAATAGCAGCTGAAGGCTGTAAGGATTGGC
TACTGAAAGATTACTTTTACTAATGAATTGATTACTTTTATATGGATATG
GATATTATTTTATAATGTTATTTTTTTGTTTTTAGATGGACAAAGAATCA
TGCTGGGGTGCGACTGACATGGAGCTAAAAGAATTAGGATTGGTCCTGAG
AGGAGATATTATTAGTTTGAAATCCTTTTGTTTTAACGCAAATCAGAACC
CTGCTTCAACCTTAAGTGTCGCCATGAGTCGGGCAGTAAAGGACAGAGTA
AGAAAAAACTCAAAAAACTCAAAAAATGTAAATTCTAGTTGGTTTCACTA
CAGTGATGGGCAGAATCGATATGTGAATGTTCGTGGTGATAAAGGAGGAG
GTCCCCAAGTAATTCCATTACCGCTGGATGCGACAAGTACCATTGTATTG
GAGGAACTCTGCAAACGATTCATACCCAATGGAAGGTGTTTTTTCGGATG
TAATGAGGAATTGAAAATTGCCATTGGAACGTCCAAAAATTCATTGTTGG
AAGATCCTGAGACATTCATACTAAAAAATTTCATTAATAATAGAAATTTA
AAATCAAAGGTTTACTTGCACCTGATGACCCGAAAGAAATCATTTCGTAC
AATGATGTTGGAGGATGTTTATAGTCCATGGCCAAATACTTCAACTCCAT
CCTCCCATACTCCTCGAGAAGCTCAATATCCTCCCCAAGGTTCTATGTCT
CCAATATCCAGTAGTTCCAGTAGAGTTCCAGTACCAGCCCTCAACGAAGA
AAGTTTATTTATTTCAAACAATAATGCAAANGAGCAAAAAGTAATTGAAA
ATATAAGACTTGATTGAATAATCGAAATTGAAAAAGTTTGAGTAACTAAA
AACTAAAAAATGAAAAAATCCAAGATGGCCGCCAGGACCATGTGCTGACC
TAAACCTAAAGTGACTTGAGGCAAAGACACACCTATATGAAAACAAAAGG
AATGAGAAGCAAAAGCAAACAAGAAAGCTTACCAGCTGCCATATGGAATC
TTGCTGAGACAGGCACGACGGAAGCTTTTTATATCTGGTACGGCGAATGA
GGAAATTTAAGCGATTTTATAGCGATTTGACCGACGAAGAGGAAAA Coding sequence (CDS) from alignment at scaffold_8:273970..275515- >TCONS_00072563 ID=TCONS_00072563|Name=TCONS_00072563|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at scaffold_8:273970..275515- (Clytia hemisphaerica)
ATGGACAAAGAATCATGCTGGGGTGCGACTGACATGGAGCTAAAAGAATT
AGGATTGGTCCTGAGAGGAGATATTATTAGTTTGAAATCCTTTTGTTTTA
ACGCAAATCAGAACCCTGCTTCAACCTTAAGTGTCGCCATGAGTCGGGCA
GTAAAGGACAGAGTAAGAAAAAACTCAAAAAACTCAAAAAATGTAAATTC
TAGTTGGTTTCACTACAGTGATGGGCAGAATCGATATGTGAATGTTCGTG
GTGATAAAGGAGGAGGTCCCCAAGTAATTCCATTACCGCTGGATGCGACA
AGTACCATTGTATTGGAGGAACTCTGCAAACGATTCATACCCAATGGAAG
GTGTTTTTTCGGATGTAATGAGGAATTGAAAATTGCCATTGGAACGTCCA
AAAATTCATTGTTGGAAGATCCTGAGACATTCATACTAAAAAATTTCATT
AATAATAGAAATTTAAAATCAAAGGTTTACTTGCACCTGATGACCCGAAA
GAAATCATTTCGTACAATGATGTTGGAGGATGTTTATAGTCCATGGCCAA
ATACTTCAACTCCATCCTCCCATACTCCTCGAGAAGCTCAATATCCTCCC
CAAGGTTCTATGTCTCCAATATCCAGTAGTTCCAGTAGAGTTCCAGTACC
AGCCCTCAACGAAGAAAGTTTATTTATTTCAAACAATAATGCAAANGAGC
AAAAAGTAATTGAAAATATAAGACTTGATTGATGTCAGCACCTCATGCGT
AGAAATGTTCCTGATGCAGTGATATCAAATTTCAGAGTCAACAAGATGGA
CAAAGAATCATGCTGGGGTGCGACTGACATGGAGCTAAAAGAATTAGGAT
TGGTCCTGAGAGGAGATATTATTAGTTTGAAATCCTTTTGTTTTAACGCA
AATCAGAACCCTGCTTCAACCTTAAGTGTCGCCATGAGTCGGGCAGTAAA
GGACAGAGTAAGAAAAAACTCAAAAAACTCAAAAAATGTAAATTCTAGTT
GGTTTCACTACAGTGATGGGCAGAATCGATATGTGAATGTTCGTGGTGAT
AAAGGAGGAGGTCCCCAAGTAATTCCATTACCGCTGGATGCGACAAGTAC
CATTGTATTGGAGGAACTCTGCAAACGATTCATACCCAATGGAAGGTGTT
TTTTCGGATGTAATGAGGAATTGAAAATTGCCATTGGAACGTCCAAAAAT
TCATTGTTGGAAGATCCTGAGACATTCATACTAAAAAATTTCATTAATAA
TAGAAATTTAAAATCAAAGGTTTACTTGCACCTGATGACCCGAAAGAAAT
CATTTCGTACAATGATGTTGGAGGATGTTTATAGTCCATGGCCAAATACT
TCAACTCCATCCTCCCATACTCCTCGAGAAGCTCAATATCCTCCCCAAGG
TTCTATGTCTCCAATATCCAGTAGTTCCAGTAGAGTTCCAGTACCAGCCC
TCAACGAAGAAAGTTTATTTATTTCAAACAATAATGCAAANGAGCAAAAA
GTAATTGAAAATATAAGACTTGATTGATGTCAGCACCTCATGCGTAGAAA
TGTTCCTGATGCAGTGATATCAAATTTCAGAGTCAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072563-exon-scaffold_8-1575043694:275452..275515 | TCONS_00072563-exon-scaffold_8-1575043694:275452..275515 | Clytia hemisphaerica | exon |
| TCONS_00072563-exon-scaffold_8-1575043694:273970..274980 | TCONS_00072563-exon-scaffold_8-1575043694:273970..274980 | Clytia hemisphaerica | exon |
| TCONS_00072563-exon-scaffold_8-1510915933:275452..275515 | TCONS_00072563-exon-scaffold_8-1510915933:275452..275515 | Clytia hemisphaerica | exon |
| TCONS_00072563-exon-scaffold_8-1510915933:273970..274980 | TCONS_00072563-exon-scaffold_8-1510915933:273970..274980 | Clytia hemisphaerica | exon |
| TCONS_00072563-exon-scaffold_8-1491911889:275452..275515 | TCONS_00072563-exon-scaffold_8-1491911889:275452..275515 | Clytia hemisphaerica | exon |
| TCONS_00072563-exon-scaffold_8-1491911889:273970..274980 | TCONS_00072563-exon-scaffold_8-1491911889:273970..274980 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:273970..275515 - |
Blast
The following BLAST results are available for this feature:
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