TCONS_00072562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072562
Unique NameTCONS_00072562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072562 ID=TCONS_00072562|Name=TCONS_00072562|organism=Clytia hemisphaerica|type=transcript|length=3336bp
gatggaactGAGTTGCGAATCTCGACAATCTTTGGTTTGGAAAGTTGAtc
atagtatgttttaaactttttgaattccTTCATGAATATCCGAACCTTTT
CGTCTTCTCCGACATCCTGACGGTCCCACACactttggattttttcgttG
GACTGGTGTAAAGCTACTTTCTCTGGTGGTTCCAACAATTTACCATTGTT
AAATGTTGACAGCGTTGAAGAAATTTCCCTTTTACTGTTTTTCACTAATA
GTTCATACTCCTCCGGTGTGATGACAATGAACTTTTTCCCACCAACTTCG
CTCATGGTGAGCGCGCAACGGTATCTATCTAAATTTCAGCAATGGCTTTG
ATAATCGGACCGAGAATAGAAGAAAAGATTCCGGCACCGTGTTGAatcaa
aagtttctttttacTGGCAGATTTCTTTTTAGAGTCGCAAAGGGACTTCA
AGACGTTCACCTTCTTTTTGAGTTGACACTTTTGTTTGCTGTTGATGGGA
ATATTACCGTGAACAACGTTAGCTATGCAATCACAAATCGTGTTGACAGC
TTCAGGTTTTGCCACCTTTAAGAGTTGTTTCCGTTCTGATGGTGAACACT
GTTGTAAAAATTTGAGGTATGAGATATTCTTTTTCATTCGTTGAGTCATG
ACGATGTTAACTGCATCCTTTACGTGTGTGAAATGAAGAGTAGAGCATAC
CACATCATTCTTTTATAGCAATTCGTTGTTACTGTTCTTAGTACATTCAA
TAATCCACAGACAAGTAAAGTTGATATGACGATGATTCATANATTGTACA
CAAGCTCTCCACTCTTTTTATCCCACCTAACACTATCGCCACCGTACTCT
TCGATATGCTTCATCAACTTCTCAGCATTTCCCCTGTGGACTTTCCCCAA
ATCTTTCAGTATTTGATCACCTTGGTTGCTATCATTCTGTCTAACGGCTC
CCATTGATGCTGATAATGATGACGATGGAACTGAGTTGCGAATCTCGACA
ATCTTTGGTTTGGAAAGTTGAtcatagtatgttttaaactttttgaattc
cTTCATGAATATCCGAACCTTTTCGTCTTCTCCGACATCCTGACGGTCCC
ACACactttggattttttcgttGGACTGGTGTAAAGCTACTTTCTCTGGT
GGTTCCAACAATTTACCATTGTTAAATGTTGACAGCGTTGAAGAAATTTC
CCTTTTACTGTTTTTCACTAATAGTTCATACTCCTCCGGTGTGATGACAA
TGAACTTTTTCCCACCAACTTCGCTCATGGTGAGCGCGCAACGGTATCTA
TCTAAATTTCAGCAATGGCTTTGATAATCGGACCGAGAATAGAAGAAAAG
ATTCCGGCACCGTGTTGAatcaaaagtttctttttacTGGCAGATTTCTT
TTTAGAGTCGCAAAGGGACTTCAAGACGTTCACCTTCTTTTTGAGTTGAC
ACTTTTGTTTGCTGTTGATGGGAATATTACCGTGAACAACGTTAGCTATG
CAATCACAAATCGTGTTGACAGCTTCAGGTTTTGCCACCTTTAAGAGTTG
TTTCCGTTCTGATGGTGAACACTGTTGTAAAAATTTGAGGTATGAGATAT
TCTTTTTCATTCGTTGAGTCATGACGATGTTAACTGCATCCTTTACGTGT
GTGAAATGAAGAGTAGAGCATACCACATCATTCTTTTATAGCAATTCGTT
GTTACTGTTCTTAGTACATTCAATAATCCACAGACAAGTAAAGTTGATAT
GACGATGATTCATAGGTGCTTAGGATGGAATGTAAACGTACTGTGGAGCT
TCGTTGGGTAGGATGTTCGTTCTCACTCTATGTTTGTCGTTCGTTTGAGG
TCGCGCATCCAGAAAGATATAGGAGAAAGGCTTTTTGGTAGCATCTTTGA
AAGCCCAAAGCAAAAATTTGGAATTTCCAGGAAGAAACTGTTTTGCCAGA
TGGTGAAATTGCGATTGATCACGGGGCGTCTTGAAAACAACAATGTAGTC
AGAATTCAAACTGATGGTCCTTTGCTTGGAGTGAAAGAGATTTTGCGTCA
GGTATATGATGGAAAGATTATCATGTCTTCCACGCGTGAAGAGCTGTTCG
ATACGTTGATCAGAGCTCGCCTGGTTCATCAAATCATCCAAAACCAACAG
ATTGTTTTTCGATTTGTCGAACATTTCATCAAGGTCAGCGGGTAATCCAA
ATACATAttctacagttggaaagtaggaTTTCAATTCCTCCAAAAGATCT
TCTTGATGCTTGGCGAACAACCATACTATTCTATCAAACTGTTTATCGAA
AACATCATTTCTGTATTTGATAAGATTTCGGGCAAAAACAGATTTCCCTG
CACCTCTTGAACCACTGACGAGTAGACTGAAAGGATGCTTCAACTTTACA
TCCATTGTTTCAATCATAGTTTAATTTCTTAGTGGGTGTTACAACTTTTT
ACTGTGAACGTGTTAGCTTCAAAGGTATGTATCACAAAGTGATGACCTAA
ACGTCAAAGTTGACCTGATTTATAGCATCCTCAAAGATTACCTTCACTGC
ACTTCTGGCTGGCCCCGGGGCGTAAGCTGTCATaactaacaaaataaaaa
aaaaacaaaaaaaaaaaacccaagcCAATTAAAAAAACGCACGCGCACAC
aagtaaaagtaaaaacaacaacaacaacataccACGAGCATGACGAAGAT
GAGAAGCATGAGATAAGTATTTCAGCTGCACTATTCATCACATTTGCATT
TTTCACACTTTATCatcatgtttttgttttcgaaaaaacCCTACCACTAC
AGAaggtgagtgacactacagaagaTGAGTGACAAtaccgaaaaaaaaaa
acattttgcaacAAGAAGAGAAAACAGGCTATAAAAGGCGACGATATAGT
gacattttcatttcatctttgaaaaatggggaagtCGAAAAAATACTTTT
GTGAATTATGTTGTAGCTCTTTCAATCGAGAGTGGAGTTTAAGACGACAC
ATAACGCGTTGTCAACTTCGTAATTCAGTTATTGGTGATGAACAGATTGA
GCAGAATAATGAAAGCTGTAATgtggattttgattttgattttttatttg
atcaatCTTCGCCTCAAGTAGAAGAAGTTACGtcacagcaacaacaacaa
caacatcaagAGAATTCATCTTTGATAAATTCACAAGAACTTGACAATAT
ACTCGAGACTGCTAGGGAAAGCGAGGCTGAATTTTCCAGAGACTTTTTAT
CACGATTCGAAGCCGCTCAAGAAAGAAATGATGATGACACGTTTTTCAGC
AATATAATACCCAACACTGAGAGCATTGGATCAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_8:262901..266346-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072562 ID=TCONS_00072562|Name=TCONS_00072562|organism=Clytia hemisphaerica|type=transcript|length=3446bp|location=Sequence derived from alignment at scaffold_8:262901..266346- (Clytia hemisphaerica)
GATGGAACTGAGTTGCGAATCTCGACAATCTTTGGTTTGGAAAGTTGATC
ATAGTATGTTTTAAACTTTTTGAATTCCTTCATGAATATCCGAACCTTTT
CGTCTTCTCCGACATCCTGACGGTCCCACACACTTTGGATTTTTTCGTTG
GACTGGTGTAAAGCTACTTTCTCTGGTGGTTCCAACAATTTACCATTGTT
AAATGTTGACAGCGTTGAAGAAATTTCCCTTTTACTGTTTTTCACTAATA
GTTCATACTCCTCCGGTGTGATGACAATGAACTTTTTCCCACCAACTTCG
CTCATGGTGAGCGCGCAACGGTATCTATCTAAATTTCAGCAATGGCTTTG
ATAATCGGACCGAGAATAGAAGAAAAGATTCCGGCACCGTGTTGAATCAA
AAGTTTCTTTTTACTGGCAGATTTCTTTTTAGAGTCGCAAAGGGACTTCA
AGACGTTCACCTTCTTTTTGAGTTGACACTTTTGTTTGCTGTTGATGGGA
ATATTACCGTGAACAACGTTAGCTATGCAATCACAAATCGTGTTGACAGC
TTCAGGTTTTGCCACCTTTAAGAGTTGTTTCCGTTCTGATGGTGAACACT
GTTGTAAAAATTTGAGGTATGAGATATTCTTTTTCATTCGTTGAGTCATG
ACGATGTTAACTGCATCCTTTACGTGTGTGAAATGAAGAGTAGAGCATAC
CACATCATTCTTTTATAGCAATTCGTTGTTACTGTTCTTAGTACATTCAA
TAATCCACAGACAAGTAAAGTTGATATGACGATGATTCATANATTGTACA
CAAGCTCTCCACTCTTTTTATCCCACCTAACACTATCGCCACCGTACTCT
TCGATATGCTTCATCAACTTCTCAGCATTTCCCCTGTGGACTTTCCCCAA
ATCTTTCAGTATTTGATCACCTTGGTTGCTATCATTCTGTCTAACGGCTC
CCATTGATGCTGATAATGATGACGATGGAACTGAGTTGCGAATCTCGACA
ATCTTTGGTTTGGAAAGTTGATCATAGTATGTTTTAAACTTTTTGAATTC
CTTCATGAATATCCGAACCTTTTCGTCTTCTCCGACATCCTGACGGTCCC
ACACACTTTGGATTTTTTCGTTGGACTGGTGTAAAGCTACTTTCTCTGGT
GGTTCCAACAATTTACCATTGTTAAATGTTGACAGCGTTGAAGAAATTTC
CCTTTTACTGTTTTTCACTAATAGTTCATACTCCTCCGGTGTGATGACAA
TGAACTTTTTCCCACCAACTTCGCTCATGGTGAGCGCGCAACGGTATCTA
TCTAAATTTCAGCAATGGCTTTGATAATCGGACCGAGAATAGAAGAAAAG
ATTCCGGCACCGTGTTGAATCAAAAGTTTCTTTTTACTGGCAGATTTCTT
TTTAGAGTCGCAAAGGGACTTCAAGACGTTCACCTTCTTTTTGAGTTGAC
ACTTTTGTTTGCTGTTGATGGGAATATTACCGTGAACAACGTTAGCTATG
CAATCACAAATCGTGTTGACAGCTTCAGGTTTTGCCACCTTTAAGAGTTG
TTTCCGTTCTGATGGTGAACACTGTTGTAAAAATTTGAGGTATGAGATAT
TCTTTTTCATTCGTTGAGTCATGACGATGTTAACTGCATCCTTTACGTGT
GTGAAATGAAGAGTAGAGCATACCACATCATTCTTTTATAGCAATTCGTT
GTTACTGTTCTTAGTACATTCAATAATCCACAGACAAGTAAAGTTGATAT
GACGATGATTCATAGGTGCTTAGGATGGAATGTAAACGTACTGTGGAGCT
TCGTTGGGTAGGATGTTCGTTCTCACTCTATGTTTGTCGTTCGTTTGAGG
TCGCGCATCCAGAAAGATATAGGAGAAAGGCTTTTTGGTAGCATCTTTGA
AAGCCCAAAGCAAAAATTTGGAATTTCCAGGAAGAAACTGTTTTGCCAGA
TGGTGAAATTGCGATTGATCACGGGGCGTCTTGAAAACAACAATGTAGTC
AGAATTCAAACTGATGGTCCTTTGCTTGGAGTGAAAGAGATTTTGCGTCA
GGTATATGATGGAAAGATTATCATGTCTTCCACGCGTGAAGAGCTGTTCG
ATACGTTGATCAGAGCTCGCCTGGTTCATCAAATCATCCAAAACCAACAG
ATTGTTTTTCGATTTGTCGAACATTTCATCAAGGTCAGCGGGTAATCCAA
ATACATATTCTACAGTTGGAAAGTAGGATTTCAATTCCTCCAAAAGATCT
TCTTGATGCTTGGCGAACAACCATACTATTCTATCAAACTGTTTATCGAA
AACATCATTTCTGTATTTGATAAGATTTCGGGCAAAAACAGATTTCCCTG
CACCTCTTGAACCACTGACGAGTAGACTGAAAGGATGCTTCAACTTTACA
TCCATTGTTTCAATCATAGTTTAATTTCTTAGTGGGTGTTACAACTTTTT
ACTGTGAACGTGTTAGCTTCAAAGGTATGTATCACAAAGTGATGACCTAA
ACGTCAAAGTTGACCTGATTTATAGCATCCTCAAAGATTACCTTCACTGC
ACTTCTGGCTGGCCCCGGGGCGTAAGCTGTCATAACTAACAAAATAAAAA
AAAAACAAAAAAAAAAAACCCAAGCCAATTAAAAAAACGCACGCGCACAC
AAGTAAAAGTAAAAACAACAACAACAACATACCACGAGCATGACGAAGAT
GAGAAGCATGAGATAAGTATTTCAGCTGCACTATTCATCACATTTGCATT
TTTCACACTTTATCATCATGTTTTTGTTTTCGAAAAAACCCTACCACTAC
AGAAGGTGAGTGACACTACAGAAGATGAGTGACAATACCGAAAAAAAAAA
ACATTTTGCAACAAGAAGAGAAAACAGGCTATAAAAGGCGACGATATAGT
GACATTTTCATTTCATCTTTGAAAAATGGGGAAGTCGAAAAAATACTTTT
GTGAATTATGTTGTAGCTCTTTCAATCGAGAGTGGAGTTTAAGACGACAC
ATAACGCGTTGTCAACTTCGTAATTCAGTTATTGGTGATGAACAGATTGA
GCAGAATAATGAAAGCTGTAATGTGGATTTTGATTTTGATTTTTTATTTG
ATCAATCTTCGCCTCAAGTAGAAGAAGTTACGTCACAGCAACAACAACAA
CAACATCAAGAGAATTCATCTTTGATAAATTCACAAGAACTTGACAATAT
ACTCGAGACTGCTAGGGAAAGCGAGGCTGAATTTTCCAGAGACTTTTGTA
AGATTCTTCTTTACTTACTTACTTTTTTTTTTTTTTTAAACCCTACTCCC
TTTGTTGTTATAATTTTTGCTTTTACATCTTTTTATTTTCTTCTCGTTAC
TGAACAGTATCACGATTCGAAGCCGCTCAAGAAAGAAATGATGATGACAC
GTTTTTCAGCAATATAATACCCAACACTGAGAGCATTGGATCAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045030XLOC_045030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072562-exon-scaffold_8-1575043694:263100..266346TCONS_00072562-exon-scaffold_8-1575043694:263100..266346Clytia hemisphaericaexon
TCONS_00072562-exon-scaffold_8-1575043694:262901..262989TCONS_00072562-exon-scaffold_8-1575043694:262901..262989Clytia hemisphaericaexon
TCONS_00072562-exon-scaffold_8-1510915933:263100..266346TCONS_00072562-exon-scaffold_8-1510915933:263100..266346Clytia hemisphaericaexon
TCONS_00072562-exon-scaffold_8-1510915933:262901..262989TCONS_00072562-exon-scaffold_8-1510915933:262901..262989Clytia hemisphaericaexon
TCONS_00072562-exon-scaffold_8-1491911889:263100..266346TCONS_00072562-exon-scaffold_8-1491911889:263100..266346Clytia hemisphaericaexon
TCONS_00072562-exon-scaffold_8-1491911889:262901..262989TCONS_00072562-exon-scaffold_8-1491911889:262901..262989Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:262901..266346 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0453825	0.0553188	0.0256922	0.0300057	0.688509	0.423165	0.816849	1.21536	0.506719	0.984965	0.379323	0.27202	0.173549	0.39181	0.0450969	0.103705	0.229962	0.174595	0.229152	0.0504824	0.921445	0.786535	0.0650433	0.260189	1.77847	1.44992	0.217799	0.232441	0.0251855	0.0384901
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006758A32L
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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