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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072557 ID=TCONS_00072557|Name=TCONS_00072557|organism=Clytia hemisphaerica|type=transcript|length=1661bp
AGATTCGCAAATACAATCTTTGCCGACAACACAAAAACAATACATAGTTG
GAGGTATTTACGCACTCACAAAGGACAATATGAAAGAAGGGATGATAGTA
CCTATATACGCCGCCACAGACCATGATGACAACTATTGGTTGTATATGTT
GACGGGCTTAAAACCGCGTAAAATTGAGGGAATATTTTTGGAGAAGATGG
ATGAAATGAATCGGTATCAGTTGGGAAGGGCGCAAGACTTGGTGTGGAAA
AATATTATTCACACAAAGAAGAGACCGGTAACCTTCTATGTCGTAGAAAT
GTTACACGATGAAGGTGGCTTCTACCGTTTGCCCCAAACTGCGATCCCGA
TGTTAAATTCCCTAACAACTTGATCAACTTTCGATTCCCGcttggaaaat
tttccatcaCTTGCAAAGTGCGGCTGGATTTCATCTTTGTGTTGTCGGTT
CGGACGTGGTCGATGGGTAGTTTTCTTTGGAATCGTAGCTTTATCGTAGA
AGTGGAGATGCTTATAGAACTGCACCACATCACAAAAAGTTCTACGAAAC
TCTAGTGTTGGTAATTACGAAATACAAGgccaacaaaaaaataattgtgT
TAAAAGCTTTTACGGTTCAAGAGCtatttcagtttttgttttctttttaa
acaatgaATTTCTACGGAAACGGAATGTAAACGAGGCCGggcttgataaa
atatattttaagacAGATTTGACCGTAAAAAcaagggatgagctggagtt
tttataagatacttcactaattggtcatttgaagtgatagagatgacgcg
ttctttagaaaaagtaacaaaattgttttataacTGGTtgacgaccaacc
aaatcaaataagagcttgtaaaaactccaccttgtcccaaaaaaacaaag
gaataaaacagccataaaaaaagaaaagaaagagcttttgatctcaaatt
ttcagggatgattttgtattaaaaaaccTTCACAAATTTCAAGTTGTTGT
TTCAAATTGAAGAGGTCGAAAAAAATCCATTATCTCGGGAAATGTATATT
TAATACATCTGTCTTTTTCTGCATGGATTCTTTTGCAGTTTTTCTACCCC
TTTCCCAATATCATAGTCAATATAAGAAACACTGGGCTGCAATGTGTCCT
TTCGGCTTTATTGTTATATTTTCCTTTTGTTGAAGACAAAAGGCAAGTTG
tgatttagatatttttcaatcaCGTTAACAAGCTCAACTCTTGAGATTAT
TTCTATAAATcaaatgatcaaaaagtgagcaaaataaATTGATTTACGAA
CGCAAGctcaaaagtttttatttttcggaTCGGAAGACTGGATTCCAGTC
CAAAAGATGGTCTAAAATAAACGTAACCCTATGGGACAGTctagaaactt
caaaaatgataataTTTGGCTGACATTTAGtacacttttattgacaattt
tgattttccaGACCGGATCCCAGTCCAAAAAATGCCCTTAGACGACAATA
AGCATGGAGgctttatttcaaaaatgatcaaatttgTTGGAAGACTTAAT
CCTTTGATGAATATATTGACTACTATGTTGAAATTATTCGTTAATTTTTG
GTGTTTTCGATATAATCTGCTCAAAAAATAATCTGCTCGCTTACCTCTTA
CTCCGTTTTTA Run BLAST on NCBI protein sequence of TCONS_00072557-protein >TCONS_00072557-protein ID=TCONS_00072557-protein|Name=TCONS_00072557-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
DSQIQSLPTTQKQYIVGGIYALTKDNMKEGMIVPIYAATDHDDNYWLYML
TGLKPRKIEGIFLEKMDEMNRYQLGRAQDLVWKNIIHTKKRPVTFYVVEM
LHDEGGFYRLPQTAIPMLNSLTT Run BLAST on NCBI transcript from alignment at scaffold_8:135471..137553- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072557 ID=TCONS_00072557|Name=TCONS_00072557|organism=Clytia hemisphaerica|type=transcript|length=2083bp|location=Sequence derived from alignment at scaffold_8:135471..137553- (Clytia hemisphaerica)
AGATTCGCAAATACAATCTTTGCCGACAACACAAAAACAATACATAGTTG
GAGGTATTTACGGTAAGAAATGTTATTCTTCTGAGGCTAGTTCAGAGGGA
GGGCATATAGAAGGAGGGTACAAAGGATCACCATGTATCATAAATTAATC
TGTGTTTTTAAAAAATTTTTGTTTAGTATAATTGTACTGCTCATGGAGTG
TTAGGAAATTCAGATTCGCTGTTTATTATATATGCACTACAAAGCCAAAA
TTAAACCTAAAATTTGTAAATGTGCTTTAATTTTTATAGTATATTTACCA
ATGTTCATGTAAAATGTAAATATAAAAAAGGTGGCTGCATAAAATCGAAA
TACATGCCTCCTAGTTCTGGGGTGAGATTCTAAGACGTCCAGGAGCAGTC
AGTGAACTAATTTTAGGAAAACTTTTAACTTGGGAATATTTTTCTTGTGT
GATGTAATTGTTTTTTAACCTATATTCTTTTTAGCACTCACAAAGGACAA
TATGAAAGAAGGGATGATAGTACCTATATACGCCGCCACAGACCATGATG
ACAACTATTGGTTGTATATGTTGACGGGCTTAAAACCGCGTAAAATTGAG
GGAATATTTTTGGAGAAGATGGATGAAATGAATCGGTATCAGTTGGGAAG
GGCGCAAGACTTGGTGTGGAAAAATATTATTCACACAAAGAAGAGACCGG
TAACCTTCTATGTCGTAGAAATGTTACACGATGAAGGTGGCTTCTACCGT
TTGCCCCAAACTGCGATCCCGATGTTAAATTCCCTAACAACTTGATCAAC
TTTCGATTCCCGCTTGGAAAATTTTCCATCACTTGCAAAGTGCGGCTGGA
TTTCATCTTTGTGTTGTCGGTTCGGACGTGGTCGATGGGTAGTTTTCTTT
GGAATCGTAGCTTTATCGTAGAAGTGGAGATGCTTATAGAACTGCACCAC
ATCACAAAAAGTTCTACGAAACTCTAGTGTTGGTAATTACGAAATACAAG
GCCAACAAAAAAATAATTGTGTTAAAAGCTTTTACGGTTCAAGAGCTATT
TCAGTTTTTGTTTTCTTTTTAAACAATGAATTTCTACGGAAACGGAATGT
AAACGAGGCCGGGCTTGATAAAATATATTTTAAGACAGATTTGACCGTAA
AAACAAGGGATGAGCTGGAGTTTTTATAAGATACTTCACTAATTGGTCAT
TTGAAGTGATAGAGATGACGCGTTCTTTAGAAAAAGTAACAAAATTGTTT
TATAACTGGTTGACGACCAACCAAATCAAATAAGAGCTTGTAAAAACTCC
ACCTTGTCCCAAAAAAACAAAGGAATAAAACAGCCATAAAAAAAGAAAAG
AAAGAGCTTTTGATCTCAAATTTTCAGGGATGATTTTGTATTAAAAAACC
TTCACAAATTTCAAGTTGTTGTTTCAAATTGAAGAGGTCGAAAAAAATCC
ATTATCTCGGGAAATGTATATTTAATACATCTGTCTTTTTCTGCATGGAT
TCTTTTGCAGTTTTTCTACCCCTTTCCCAATATCATAGTCAATATAAGAA
ACACTGGGCTGCAATGTGTCCTTTCGGCTTTATTGTTATATTTTCCTTTT
GTTGAAGACAAAAGGCAAGTTGTGATTTAGATATTTTTCAATCACGTTAA
CAAGCTCAACTCTTGAGATTATTTCTATAAATCAAATGATCAAAAAGTGA
GCAAAATAAATTGATTTACGAACGCAAGCTCAAAAGTTTTTATTTTTCGG
ATCGGAAGACTGGATTCCAGTCCAAAAGATGGTCTAAAATAAACGTAACC
CTATGGGACAGTCTAGAAACTTCAAAAATGATAATATTTGGCTGACATTT
AGTACACTTTTATTGACAATTTTGATTTTCCAGACCGGATCCCAGTCCAA
AAAATGCCCTTAGACGACAATAAGCATGGAGGCTTTATTTCAAAAATGAT
CAAATTTGTTGGAAGACTTAATCCTTTGATGAATATATTGACTACTATGT
TGAAATTATTCGTTAATTTTTGGTGTTTTCGATATAATCTGCTCAAAAAA
TAATCTGCTCGCTTACCTCTTACTCCGTTTTTA Coding sequence (CDS) from alignment at scaffold_8:135471..137553- >TCONS_00072557 ID=TCONS_00072557|Name=TCONS_00072557|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_8:135471..137553- (Clytia hemisphaerica)
CACTCACAAAGGACAATATGAAAGAAGGGATGATAGTACCTATATACGCC
GCCACAGACCATGATGACAACTATTGGTTGTATATGTTGACGGGCTTAAA
ACCGCGTAAAATTGAGGGAATATTTTTGGAGAAGATGGATGAAATGAATC
GGTATCAGTTGGGAAGGGCGCAAGACTTGGTGTGGAAAAATATTATTCAC
ACAAAGAAGAGACCGGTAACCTTCTATGTCGTAGAAATGTTACACGATGA
AGGTGGCTTCTACCGTTTGCCCCAAACTGCGATCCCGATGTTAAATTCCC
TAACAACTTGAGATTCGCAAATACAATCTTTGCCGACAACACAAAAACAA
TACATAGTTGGAGGTATTTACGCACTCACAAAGGACAATATGAAAGAAGG
GATGATAGTACCTATATACGCCGCCACAGACCATGATGACAACTATTGGT
TGTATATGTTGACGGGCTTAAAACCGCGTAAAATTGAGGGAATATTTTTG
GAGAAGATGGATGAAATGAATCGGTATCAGTTGGGAAGGGCGCAAGACTT
GGTGTGGAAAAATATTATTCACACAAAGAAGAGACCGGTAACCTTCTATG
TCGTAGAAATGTTACACGATGAAGGTGGCTTCTACCGTTTGCCCCAAACT
GCGATCCCGATGTTAAATTCCCTAACAACTTGAGATTCGCAAATACAATC
TTTGCCGACAACACAAAAACAATACATAGTTGGAGGTATTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072557-exon-scaffold_8-1575043694:137492..137553 | TCONS_00072557-exon-scaffold_8-1575043694:137492..137553 | Clytia hemisphaerica | exon |
| TCONS_00072557-exon-scaffold_8-1575043694:135471..137069 | TCONS_00072557-exon-scaffold_8-1575043694:135471..137069 | Clytia hemisphaerica | exon |
| TCONS_00072557-exon-scaffold_8-1510915933:137492..137553 | TCONS_00072557-exon-scaffold_8-1510915933:137492..137553 | Clytia hemisphaerica | exon |
| TCONS_00072557-exon-scaffold_8-1510915933:135471..137069 | TCONS_00072557-exon-scaffold_8-1510915933:135471..137069 | Clytia hemisphaerica | exon |
| TCONS_00072557-exon-scaffold_8-1491911889:137492..137553 | TCONS_00072557-exon-scaffold_8-1491911889:137492..137553 | Clytia hemisphaerica | exon |
| TCONS_00072557-exon-scaffold_8-1491911889:135471..137069 | TCONS_00072557-exon-scaffold_8-1491911889:135471..137069 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:135471..137553 - |
Blast
The following BLAST results are available for this feature:
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