TCONS_00072548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072548
Unique NameTCONS_00072548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072548 ID=TCONS_00072548|Name=TCONS_00072548|organism=Clytia hemisphaerica|type=transcript|length=2442bp
AAAACTTAAAATGTATTAACCAGCAGATTGATAGAACAGAAAAAGCGATT
GCTTATGTAGATCTACATGATGATACAATTAtgataattttgtttttcag
agtaaaggaagaaaaatgtcTAAGCCTCAAGTtggcaaaaagaaagaaat
ttacaAGTACAATGCGCCATGGACAGTTTATGGTATGAACTGGAGTGTCC
GTCCTGATAAAAAATTCAGATTGGCTTTGGGTAGCTTTATTGAAGAATAT
AGTAATAAGgTACAAATTGTTCAACTTGATGAAGAAAGTGGTGATTTCAT
ACTCCGCTCAACTTTTGATCATCCTTATCCAACAACGAAGATTGTTTGGA
TCCCTGATGAGAGAGGACATTATCCAGATTTAGTGGCAACATCTGGTGAT
TATTTGCGAGTGTGGAATGTCTCAAATGATGAAGTCAAATTGGAAACACT
TTTGAATAATAATAAGAATTCAGATTACTGTGCACCATTGACCAGCTTCG
ATTGGAATGAAGTGGACCCGAACATCCTGGGAACTTCAAGTATCGATACC
ACATGCACTATTTGGGGATTGGAGaCTGGTCAACCGATTGGGCGAGTACA
AGGCCATGTAAAAACACAACTGATAGCTCACGATAAAGAGGTATACGACA
TTGCATTCAGTCGAGCGTGCAGCGGTCGCGATACGTTCGCTTCGGTCGGT
GGCGATGGTTCTGTTCGGATGTTTGATCTCAGACACTTGGAACACTCGAC
TATTATTTACGAAGAAGCACAACACACACCTTTATTAAGACTGGCCTGGA
ATAAGCAGGATCCGAACTATTTGTCTACATTTGCTCTTGATAGCATGGAG
ACGATCATTTTGGACATGCGAATGCCGTGTACTCCAGTGGCTCGTTTGAG
TAATCATCGTGCGGCGATCAACGGTATGGCATGGGCACCACATTCTTCAT
GTCATATTTGCACATCAGCTGACGATCACCAAGCATTAATCTGGGACATC
CAACCCATGCCACGAGCAATTGAGGACCCAATTCTCGCTTACACAGCTGA
AGGTGAAATCAATAATGTCAAATGGGCTACGAATCAACCTGATTGGATCG
CTATCAGCTACAACAAAAGTGTTGAAATCCTACGTGTTTAAGGACAATGG
acattggatttttttaaatgcttaATTTTCTGATGAGCTTGGGTTATCGA
ATAAGGCAAAAACCAAAGTATGGTCGAGATCCTATGTGTCTAAGGACAAT
GGacattggatttttttaaatgctttaTTTTCTGACGAGCTTGGGTTATC
GAATAAGGCAGAAACCAAAGTCGAGATCCTGTGTTTAAGGACAATGGGCA
TTGgtttttgaagatgttttatttTCCAAGTTCGGGTCAAGGCGCAACCA
AAGGCGAGTGGATTCCTTGTCCAACTTGCCATCTGGCTCGATAATGCAAA
GATAGTTCATAGCTATCAGTTACAATCGAAGTTTTCAAATCCTCCCTGTT
TAAGGACAAGAAACATTGGATTTTTTAAGAATGCTTTATTTTTGATAAGC
TTTGGTTATCGAATAAGGCAAAAACCAAAGTCACTCGAAATCCTCCGCCA
TAAAAGACAATAGACATTGGATTTCTAAAGATGCTTTATTTTCTGATGAG
CTCGGTTTATTGAATAAGGCTGTCTTAAGGTTGTTGATTTTGTTGATGGA
GCTATCTCCAACACAACATCATTGAACATCATTGGTCACTAAGATTCTAa
acatgaaaatatgaaaataacaTATGCTTGAGAAACTTGGACAGGGGCGT
TGTAAATGAAGAACTCTGAACGCGGCACATTTTTATTGGGTCGTGGCCAG
GTCCCACAAAACGTTTAACTTTTGTTTCAAGATATCCTCGAAAGTATCGG
TGAATATGTTCGTACGTTTTCGCTTTTTATTAGTGTCCTCCTgaaaaaag
tatgattgaaatGTCTTTCTGGCGTTTTCATCGGACGATGGTTTCAAACA
TTCAAATTTCAATCTCTCTGTCACTATcctattatttttttcaatcaaat
gttAGTAAAACTATGCCAAATTTGGATAATAAGTTAGCATTGAACCAAAC
TAGATCTCAAAACGGCCATTTTCATCACGTCGTTGTTCACTTCCAAGACA
GGTTTGGCCTAAAAGTAGAAATTTCTCTCGATTTTGCATGGTGTTTGTTA
CTGATTGATACTTAATTTTTACCCAANTGGCCTAAAAGTAGAAATTTCTC
TCGATTTTGCATGGTGTTTGTTACTGATTGATACTtaatttttatccaat
tttttacGGTTCGATGCGTGAGAGCAGAATATTTGTCATTTTTACGCGCA
AGCTTATGTAAATAGTCAacaatttatgtaaatatttttcttaatttcat
ttttttctatgaagAAAACAATtagctttgaaaatttacaat
Run BLAST on NCBI

transcript from alignment at scaffold_8:521380..533856+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072548 ID=TCONS_00072548|Name=TCONS_00072548|organism=Clytia hemisphaerica|type=transcript|length=12477bp|location=Sequence derived from alignment at scaffold_8:521380..533856+ (Clytia hemisphaerica)
AAAACTTAAAATGTATTAACCAGCAGATTGATAGAACAGAAAAAGCGATT
GCTTATGTAGATCTACATGATGATACAATTAtgataattttgtttttcag
agtaaaggaagaaaaatgtcTAAGCCTCAAGTtggcaaaaagaaagaaat
ttacaAGTACAATGCGCCATGGACAGTTTATGGTATGAACTGGAGTGTCC
GTCCTGATAAAAAATTCAGATTGGCTTTGGGTAGCTTTATTGAAGAATAT
AGTAATAAGGTGAGTTTAAGAGCTACCTAAATTGATGCGGCTAAAATTCT
GCTGTGATCTGACAAAAGAAAGtaaccaaaaattgaaaatttaaaatcta
tgttttttacaaaaattaactCGTACGAGTCCTTCATTTATTCCCCACAA
AGATGGGGGAGGGAGGTGATTTTGTCTAAACTCTCGACTTTGAAATCTAG
AAGTGATTACAAATTAGATAAAATGCATAGCGTAATGTTCCTACTATAAT
AGTTACAATGTTTTTCATACCACTGTTCAGATGAAATTTCAATATCATAT
AATTCATAattaatttcaaatcaaaataggTACAAATTGTTCAACTTGAT
GAAGAAAGTGGTGATTTCATACTCCGCTCAACTTTTGATCATCCTTATCC
AACAACGAAGATTGTTTGGATCCCTGATGAGGTGAGATAACATCCTGTTA
TATGTGTCATCACAAACAActttgtactagtaataacatggtttagagcg
TGAGGactattttgaagtgttttcaatgaaacgaggggttattaatccca
aatcaccctctaaaccatgttattccgcgttaattacatggtcaaaaaaa
gaattgaagagcactcaatcgctattcttttcgaaacttataaaaacatt
cgaaactataaaaaaacattcgactgacactcttattttgattgggttaa
aaatttcgtacgatattttgttaaccaatcaaaatatcgtacgatacttt
taTTTCAACCNatttcgtacgatattttgtcaaccaatcaaaatatcgta
cgatacttttctttcaaccaatagaaatttttgtttacatcagggcgatt
acaaaaaagcgaggctattacggatttatcgccccgctcgtcctttacaa
atctaagctaaatgtaatcaaccatataattaaaatacaaataaaatgga
acgtGCCAGTAAAGTGAACGATTTGGAACGTTCTAAGAACACTAGAGGTT
CTTGAACGCTCCTGATCATTCCTTTTTATTTACTAGTTTAAGAATGTCTT
AGAACGTTCGGGAACATTGTAGAACCTTCAATAACGTTCCAAAACGTTCT
TATTGAGTTAGATATTAACCTTTGGACGCAAAGGATCATTCGCAAACGTT
CATTAACGTTCCTAAACGTTCTGAAACATTTTTGAACATTCGGGAACGTC
TCAAGAACGCTCTATTTCATTTGTACTCCAAATTGCTTGTGATGACACAA
ATGTCTTGACATGTATTTGCCAACAATTTTTATCAATGTATGTATTAGAA
ATGGGCCCTTCAAGAATAATAACAATGCGTTCATAATttgttggacggtg
aaaaagaatgcggctattatattttgatttttcccgacatgtttcggact
cggtccgttctcaagggaataatatttctatagaaaaaaaagcgttttta
tacaaaattatttgacgtcaaattggaCAAATACGTCATTTTAGGCGATT
TCGGCTTGAAAATGGGTTGGTGTAAATGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCTTGGT
CACACTCCTTGTAGAAAGTCTGATCGTTTAGTTGTCTTAGGGCTTCATTT
ATATAATCTGCAACGTCTTGGATTACTACGGCGCCTCCTTTATCGGCGTT
TGTGATGATGATGTCTTCTTTTCTCCTTAGTTGTTCTAAAGCTTCacgtt
cttcttttttcagattGTATTTGCGTTTGGTTCTTGTGACCTCATGGTTA
TTTATCTCGTTTTCAAAGGcgtcaataaaagttttgactgTGTGATGTGG
GTTATTTGGTGTCCattggttatttttcttttttatgtagAATGGCTTTT
TAGCCATTGTTACATTAGGGTCGTTTCCAAAATGTgcttttagtttaatt
tttcttgcGAAGTCGTTTATGTCGTTCTGTAGCGTTGTTCTGTTGTAGTT
ACCTTGTGTTGGACAAAAGTTTAGGTTTTTACCAAGTAGGTTGTATTCTG
CTTttgtgaatttttgttttgaaagattaaCTACATTCCCTGAGGGGTCT
GTGGCGTATCTTGTTGTTGGAATTGTGTTGCAAAGTCGCTTAACGTTTTC
ATGGTAGTGTTTATGAGGTTTATTATATCGTTTGTGCTTTGTGCCCCTTG
AGAAGGGGCAGGCTTGTAGTTTTTTGAAGGTCCAGGCTCTTCAGGTGTAT
ATCTTGTTGTTCTTTGTGATCTTAGCTCACGTATTTGTTCCTGCAGTTTG
TCAATTTGCTCGTCACGGTCGGGGGCGTTGTTTTGCTGTGGCCTTTGCAG
GATTCGCGGGGGTCTTTGATTGTAGTTATTAGTTAACTGATTTAGATTAT
TGTTTCTTGGTGCGAAGTTATTTGTGCGTTGGGTGTAGTTATTGCTTCTC
TGGTAGAAGTTGTTTGTTCTGCTGTTGTTTCTGCGAGCAACTTGAGAGTA
TAAGGGTTTGTTAGATCTGCTTCTAGATCGGCTGCGATTTCGTCGTGGTG
GAGCATCATCTTCTGCTGTAACGTTGGCTGATCGGCCTTGGCGAGTGGAC
TGGTCCACGTTGTATTTCAATCGgtaaaatttcttgtttttcctGGTATC
AAGGGTTTTCTTGCGCGTATCCTGATTTTCTTTAAGCGCTTTTTTAATTT
CTCTGTATTTACCTGGTTCGGTTTTGGTTTTGATAGCTTCGTCAGCTTCT
TTGATCTTGTCATCAATTTCTGGAGTTGTTTTTTCGCAGAAATCGGCAGT
CATCTTCATcaatacaaaagaaaattcgTTGAGTTTACTATACCATTGTT
CTACAAATTGTGGATCATGGTTTCCAATCGATGGTTCTAAATTGATTTGA
AGTCCCTTAGGGACAACTTTCTGTTCGATGCAACGATTTAAGAATTGTTT
GTGTGACTCAATGCGTTCATAATTAGTATATTATTATTAGATCTACCCTG
AGCCAGTCTGGAAAGAAGCAACTTTTAtgttgaagatatttttttgtAGC
CAAGAGCTGTGCCACTGCATGAAAGTTTTTGAGGGGATTCAGAGATAGAA
AAtcgtttttttcagtttttccaaaaaaaaacgaTTGACCTCATGGATAT
GTTTTAGCCATGAACAAGCATTTATCACTGGACACCCTGCTGGGGAAAAT
TCAATGATAGTCTTTTAACAAGGGTTGTAAAGACGATTACCTAGATGGTA
ATGGAATTGATTGATATTGTGCTATTCTTTGTTGAAAACTTTTCAGTCCC
TCTAGCGGACATTTTGTTATCATCTCTCAAAAAAACTGTCTGGAACGTAG
CATTTCATTATAAAAATTtgctttttgcaatttttttcttacGTTTTCCT
ATTAGAGATTCTACTTGTAAGCTCTTTTTAGTTGGGGTTGATTTGGTaaa
cagtcaactctctctaattcgatcatCTCTAttatctttctgtaattcga
actaagatATATTGGTTTCCTCAGCAGGAAAATGGTTTAAATTAATCTGt
gttattcgaatttttctgtaattcccgatcgaattagagagagtcgactg
taGTTCTCTTCTCCCTTCAATTATTTTAACTTCCTCCTCTTTCTATCATT
cccaatacacttttttttataagaacaaaatttttgaagctttcggatgt
tcttactTAACttattgagttttaagcctaaaaatgttcttaacatgttc
ttagtttgacaacttgttcttaatcttttggtcatcaaagccttatgttc
ttatatactttgttcttataaagaaacacGTGTATTTTTCTCATCTCATA
GAGAGGACATTATCCAGATTTAGTGGCAACATCTGGTGATTATTTGCGAG
TGTGGAATGTCTCAAATGATGAAGTCAAATTGGAAACACTTTTGAATAAT
GTAAGTGGAGCTTTATATTGGGTTGCTAACCTGGGGAGTGCTTCAGCAAA
AGAGAGAGTTCTTGGTGTAGTcttttttataaacttttgaaaagtttcaa
aactaaGTTTTATAAAAGACTTTGACTGGAGTAAGTTCTTAGGTTAGATT
TTTTAGATTGGGCTGACCTTTTTGTCTGTCACACCTGAAATTAAACAAGT
GATGTCATTTCATATACCTTTAGtataaaatttattgataacAGAAGCTT
CTCGTTGTTCATCTTTGAAATGTATAGATATATATTTTGGTCCTCAACCA
TCCTAAATAGAGTAAAACTACTAAAAGATGTTATACTTTTTTCGNAATAG
ATATTTTGGTCCTCAACAGAGCGGAACCATCCTAAATAGAGTAAAACTTT
AAAAGTACTAAAAGATGTTATACTTTTTTTCGCCCTACAAATATTCAATC
TATCCACTCTTTTTTTAGAATAAGAATTCAGATTACTGTGCACCATTGAC
CAGCTTCGATTGGAATGAAGTGGACCCGAACATCCTGGGAACTTCAAGTA
TCGATACCACATGCACTATTTGGGGATTGGAGGTATGGAAagttattttt
gctgattttacCATTATTAATGTTTAGGGTCCGAGATTGACTGTCGCCTT
GGATGGTTAGCAATACGAGAGGACAACCCCCCCCctccaattttattttt
taggatATTCCATCACGTTGTAAAAGGCTCGTTAGTTGAAATGCTGATAT
GATTTTTGGACCTTTCTGGAGGTCGTATTAATTAACCCATGTGTGTCTGT
TTGTCCGTTACTAGCCTTTTTCTGGATTGAACAATATTTATACGTAtact
caaaatgaaaaagaattcggGGTAAATTTCAGTCGAAAAAAACGCTAAAA
ATGGTACTTTGTGAAATGAGCTTTTTTGGCATCAGGTCCCATTTGATTTT
ACTCAGTTGCTTTAAGtgctttttcatcttcttcagaATGGCGTTTTATC
ATCTTAGTTCAAACGAGTATaaatttccttctagttataatttgaatgaa
aaatttttttggttagaaagattaaagataaaaattattaataatgtaaa
aaaaaatcattagttCATTAAATTGGCATGATTAATGAcaaaaatccaag
aaaatgGGTGCTTTTTCTATATATAGCTCCTTCCGGCTATCTAAAAATAG
TCAAGTTGTATTGAAATTTCGAGCACACCACCTCTATGTGGTCCCGATCT
TAAATCCATCGAGCCAAATTAAGAAATATTAGATTCCAGGAAGATATGAC
GGGTTAAAGGACACAAATGTGCGATACTTCTCCCTTCAAATGTAatttat
tgttccttgaatttttttttatatatatggcTCGATGGTTCCAAAAAGAT
CAATCTTTTAGCTATCATAATCtataaagaaaatttggaaactCTAAAAA
TTAGACTGCCGGAGAGCCAATGTACCACCTTTTTGAGTGGTCATTTCATA
AAATCTCACTTTTCATGTTTGAAAATacgttttgtgattttctctttacA
GTATGCATCACTAATTGAATTTAACACAAAAGACTTGTTTAACAAATTTA
GTAGTAAACATCTCTAGTAAACAAAAAGAGAACTTCCAATATACAATTTC
GAGAAACGTCTTCTTGCAAAGTAAAAAGTTACTGAGGCGTGACAACACGC
ACTTAAAGAAACTGAGTACGAAATTATCATTGATTTTCTTCAGATAACAT
TTTTCATCATCTTTCATGGTCAAGTGTCCCTTAGAATAGTACAGTCTTCT
GTAATTCCCTCTGTTGGAAAACGGTTTAAGTtattctctgtaattcgaat
ctttctctaattctaataaaatttttggtcccttgaagatcaaGTTAGAG
AGAGTCTACTACTATAACCTTGTACTTTTGTTTCTCTAATTTAATCCCTT
CACTGTAAGTGTGCACCAATtctttttttaacgttttctaaacttttgtt
ttagaCTGGTCAACCGATTGGGCGAGTACAAGGCCATGTAAAAACACAAC
TGATAGCTCACGATAAAGAGGTAACCACGGCAATACATTGTTTTCCTCTG
CTCTTTTTACTCGTCATGtgcatagcgtcagcctgggtttaggtcccagg
caaaaattaggtcccccctgagttttaagtccccccaaagatttatgaat
tttttgttagttcccaggacttttgaccctagacactttcaaaaaatagc
tGATGTAAATTGCGCTCAGTTGTAAATTTAAGATAACATATTTTTTTAGA
TTAATGAGCTTCAATTTGGGTAATTcaagccaactattaagctgaattat
tttagcccccacgttATGAgatgatgagattttagctccccccaattaca
taggtccccccaaaaaagtggtgtacttccagctccctccttttttggga
aaaatttagggtgtaaccccccccccccccctttttggggaaaaatttgg
ggggtaaccccccccccccccctttttggggaaaaatttggggggtaacc
cccccccccccccttttttgggaaaaatttagggtgtaaccccccccccc
ccaactagCAGGGGGGGTTGACGCTATGATGTGGCCTAATATCACTCAGA
TTTTCAATACAGTGACACTGAAAGTTGACTCTAAACATTTCGTCACTTTG
TTTAAAATGCCAGTAAAATTAGCCAGTAAAATTGGGCCTTTCCAGAAAAC
AGAAATGCCCCTTTACCTGGGTTTTTGACTGTgtttttttaaaagacttt
CCCGGatgtttcacaaaatttaaCAGGCTTTGCTGGATATTTTTTAACTT
CACACGTGACCAGATGTCACACAGATTTCCAATACACCTATCAACTCTTA
AAAGTGCGGTCGGCTTTTTCGGGGACTGGTAATgaatataaaatgttttt
ctttgagAATGTTAATGCAGCGACTTAAGACAATTTGACGCCCTTCTTTC
CTTTTAAAATCCAATCCAGTCTTCTCAAGATTTAAAAGGTTGATAGGTGT
ATAAAGTGAAATTaaacttgtttgttgtttaCAAACAAAAATCTCTAATA
TTATCtacatattcaaaatatttttgggagcTGCGCCCAGCTTCATCAAT
ATACAGCTTTGCTGAGAAAATTCCTTTTCAGGCATATTAGAAACTCAATC
TAAGTTTACAAAAACAGCCCCAGCTCAAGGTGCTTAAAAAAATCCCTGCG
TACTCATACCctccaaattttcattttcaaactaATGATTTTATCGTTGC
AGGTATACGACATTGCATTCAGTCGAGCGTGCAGCGGTCGCGATACGTTC
GCTTCGGTCGGTGGCGATGGTTCTGTTCGGATGTTTGATCTCAGGTTAGA
TTGATACGATTCATTAGAAATGTTCCTGTAACAGTAATTTGTGGACACGA
TCTGTCTAATTTCAAATTAGGTCTCTCAGACATCTTGAGGTTCATAACAT
AGGTTATGCTTCTCTAATAGGATGAGataaattcgaaaaaatttaGATGA
ATTTATCAAGGCTGAACAAGttcattgtatttttgtaacaagcatatatg
gtcaattttagacagAACATTTTGTCAATAGTtgatttttttacaatatt
tgaCTTGAAAATGTGACTGAAAATCGCCTTGAATGAAAAGATGGTGTTGT
TTGTTATTATTTGTTGATTGTTAACTCCGAAAAGTTCTAGATTCTAGGCC
GAAGACTTCTTAGCAAGCccagtgtattgattagcgtgAATATGTACTTG
AGGTGGTGAACCGAATTTTTAGACCGGCGATGGGCAATTTCTTTTCGTTC
TTTGGACAGGTGAAATTTGCCGTTCGCCGGCCCTGAATAAGACCCCCCCC
CACTCCTTTGTCAAAGATGTAATATTTTATGCTCTACCTTTTATTATCAT
AGACACTTGGAACACTCGACTATTATTTACGAAGAAGCACAACACACACC
TTTATTAAGACTGGCCTGGAATAAGCAGGATCCGAACTATTTGTCTACAT
TTGCTCTTGATAGCATGGAGGTAAGTTTATTTCATATTCTTGTACTgtct
tgtttttcttaaaaaacagtACATTTTTGTTTGGGCTCTTATTTTCTGGT
GCTTTGAGCCTCTAATTGTTCTTACCCCGCTCTTATCTTTGTGTGCGCTC
ACATGAAAGCTTTCACTCGGCTAGACACATGACCTTCGAAATTTTAGTCC
ATCATAGAGCGCGGTGTTTCTGATCACCCATGATTCCTTTTCACTATGAA
ATGGCATGTTCGGGATTTCTACTACAATGTCTTCTGGGAAATCgagtata
aaaaaattattcatatGATTTCGTGAAGTCAACGCAGTGGTGCATATAAT
GATTTGCGATGTTATTAGGAGGCATGATTGAAAAATGTTAACGATGTTAC
GCACTGATCAATTTTCTGATAACTTATTCTCTATTTTTCTTATCTTACTT
ACACAATAGACGATCATTTTGGACATGCGAATGCCGTGTACTCCAGTGGC
TCGTTTGAGTAATCATCGTGCGGCGATCAACGGTATGGCATGGGCACCAC
ATTCTTCATGTCATATTTGCACATCAGGTACGTTTNTGGTATGGCATGGG
CACCACATTCTTCATGTCATATTTGCACATCAGGTACGTTGCTTTTTGTA
CTGCGTTAATGTGATTATCAGATGGTTTTGAAGATATATGGCCTGAAAAA
GCTTCTGTTGTCCTTAGTAAGACCTTCAAGCATTTTGGTGTAACTTTTTT
CTAATGTTGAGATATCACAatccaaaaaatctgaaaatgggTTCTCATAT
GTTTCTTACGTTGTAGTCCTATTACTTTCTTACTAAAAGGCGAAAACTTG
CAACTCTGCAAGTTTccactttggaaaatatttGGGGAAAagtattttga
agttttgctaAGGACAATAGAAGGATGCCATATGTCAAgtatctcaaacc
atcaaaataTCCCTTTACAACCTCTTTTTACCTTTAATTATGTAGTAAAT
CGAGTATCCGAAAAGAGATTCTGATTTAATGTTTGTCGATCATTTTCTCT
AAAGCTGGTCAATTAGAGCCCAATCCTCTTTCCATGCACTTTTTGACATA
TTGGTTGATTTTGTGTGTTGACTGATGTATTTCGATATGCAAGGAGATTT
GAAAGTCGCGCTTTCCATAGTTCGAACCGGTATAAACGCTCTATGTATCT
ATAAATACTATGGCCAGGATGGACTTTTGCCAAATATTACAGTGCAGTCT
CTTCAACTGAaacttctataactcgaatatcttCTTAACTCAAACAAGAT
TCATGGTCCCTTATGTCAACAATGCCTTAtcaaccttactccataactcg
aacaaatttgtgttctgCCTgtgttttcatgTTATTGAGACtccaattat
tttcaaaaatctaatcAAAGTGATtacaagaaatttatttttatatcttC
AAGCTGACGATCACCAAGCATTAATCTGGGACATCCAACCCATGCCACGA
GCAATTGAGGACCCAATTCTCGCTTACACAGCTGAAGGTGAAATCAATAA
TGTCAAATGGGCTACGAATCAACCTGATTGGATCGCTATCAGCTACAACA
AAAGTGTTGAAATCCTACGTGTTTAAGGACAATGGacattggattttttt
aaatgcttaATTTTCTGATGAGCTTGGGTTATCGAATAAGGCAAAAACCA
AAGTATGGTCGAGATCCTATGTGTCTAAGGACAATGGacattggattttt
ttaaatgctttaTTTTCTGACGAGCTTGGGTTATCGAATAAGGCAGAAAC
CAAAGTCGAGATCCTGTGTTTAAGGACAATGGGCATTGgtttttgaagat
gttttatttTCCAAGTTCGGGTCAAGGCGCAACCAAAGGCGAGTGGATTC
CTTGTCCAACTTGCCATCTGGCTCGATAATGCAAAGATAGTTCATAGCTA
TCAGTTACAATCGAAGTTTTCAAATCCTCCCTGTTTAAGGACAAGAAACA
TTGGATTTTTTAAGAATGCTTTATTTTTGATAAGCTTTGGTTATCGAATA
AGGCAAAAACCAAAGTCACTCGAAATCCTCCGCCATAAAAGACAATAGAC
ATTGGATTTCTAAAGATGCTTTATTTTCTGATGAGCTCGGTTTATTGAAT
AAGGCTGTCTTAAGGTTGTTGATTTTGTTGATGGAGCTATCTCCAACACA
ACATCATTGAACATCATTGGTCACTAAGATTCTAaacatgaaaatatgaa
aataacaTATGCTTGAGAAACTTGGACAGGGGCGTTGTAAATGAAGAACT
CTGAACGCGGCACATTTTTATTGGGTCGTGGCCAGGTCCCACAAAACGTT
TAACTTTTGTTTCAAGATATCCTCGAAAGTATCGGTGAATATGTTCGTAC
GTTTTCGCTTTTTATTAGTGTCCTCCTgaaaaaagtatgattgaaatGTC
TTTCTGGCGTTTTCATCGGACGATGGTTTCAAACATTCAAATTTCAATCT
CTCTGTCACTATcctattatttttttcaatcaaatgttAGTAAAACTATG
CCAAATTTGGATAATAAGTTAGCATTGAACCAAACTAGATCTCAAAACGG
CCATTTTCATCACGTCGTTGTTCACTTCCAAGACAGGTTTGGCCTAAAAG
TAGAAATTTCTCTCGATTTTGCATGGTGTTTGTTACTGATTGATACTTAA
TTTTTACCCAANTGGCCTAAAAGTAGAAATTTCTCTCGATTTTGCATGGT
GTTTGTTACTGATTGATACTtaatttttatccaattttttacGGTTCGAT
GCGTGAGAGCAGAATATTTGTCATTTTTACGCGCAAGCTTATGTAAATAG
TCAacaatttatgtaaatatttttcttaatttcatttttttctatgaagA
AAACAATtagctttgaaaatttacaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045021XLOC_045021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072548-exon-scaffold_8-1491911889:521380..521638TCONS_00072548-exon-scaffold_8-1491911889:521380..521638Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1510915933:521380..521638TCONS_00072548-exon-scaffold_8-1510915933:521380..521638Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1575043694:521380..521638TCONS_00072548-exon-scaffold_8-1575043694:521380..521638Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1491911889:521959..522060TCONS_00072548-exon-scaffold_8-1491911889:521959..522060Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1510915933:521959..522060TCONS_00072548-exon-scaffold_8-1510915933:521959..522060Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1575043694:521959..522060TCONS_00072548-exon-scaffold_8-1575043694:521959..522060Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1491911889:526781..526879TCONS_00072548-exon-scaffold_8-1491911889:526781..526879Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1510915933:526781..526879TCONS_00072548-exon-scaffold_8-1510915933:526781..526879Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1575043694:526781..526879TCONS_00072548-exon-scaffold_8-1575043694:526781..526879Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1491911889:527348..527461TCONS_00072548-exon-scaffold_8-1491911889:527348..527461Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1510915933:527348..527461TCONS_00072548-exon-scaffold_8-1510915933:527348..527461Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1575043694:527348..527461TCONS_00072548-exon-scaffold_8-1575043694:527348..527461Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1491911889:528884..528949TCONS_00072548-exon-scaffold_8-1491911889:528884..528949Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1510915933:528884..528949TCONS_00072548-exon-scaffold_8-1510915933:528884..528949Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1575043694:528884..528949TCONS_00072548-exon-scaffold_8-1575043694:528884..528949Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1491911889:530182..530273TCONS_00072548-exon-scaffold_8-1491911889:530182..530273Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1510915933:530182..530273TCONS_00072548-exon-scaffold_8-1510915933:530182..530273Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1575043694:530182..530273TCONS_00072548-exon-scaffold_8-1575043694:530182..530273Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1491911889:530832..530949TCONS_00072548-exon-scaffold_8-1491911889:530832..530949Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1510915933:530832..530949TCONS_00072548-exon-scaffold_8-1510915933:530832..530949Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1575043694:530832..530949TCONS_00072548-exon-scaffold_8-1575043694:530832..530949Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1491911889:531389..531506TCONS_00072548-exon-scaffold_8-1491911889:531389..531506Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1510915933:531389..531506TCONS_00072548-exon-scaffold_8-1510915933:531389..531506Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1575043694:531389..531506TCONS_00072548-exon-scaffold_8-1575043694:531389..531506Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1491911889:532383..533856TCONS_00072548-exon-scaffold_8-1491911889:532383..533856Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1510915933:532383..533856TCONS_00072548-exon-scaffold_8-1510915933:532383..533856Clytia hemisphaericaexon
TCONS_00072548-exon-scaffold_8-1575043694:532383..533856TCONS_00072548-exon-scaffold_8-1575043694:532383..533856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:521380..533856 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.75696	7.78433	9.03819	13.7574	22.7285	17.0139	12.5434	18.1484	7.4741	4.62894	0.898593	5.3163	6.48867	11.0309	2.51818	8.64767	8.65575	10.9192	1.88568	6.90631	8.57549	5.01938	7.11868	9.24563	13.3345	13.6	10.9474	9.08532	6.89163	4.01197
Blast
[Close]
BLAST of TCONS_00072548 vs. Swiss-Prot (Human)
Match: DCAF7 (DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1)

HSP 1 Score: 591.267 bits (1523), Expect = 0.000e+0
Identity = 275/338 (81.36%), Postives = 303/338 (89.64%), Query Frame = 2 
Query:  134 GKKKEIYKYNAPWTVYGMNWSVRPDKKFRLALGSFIEEYSNKVQIVQLDEESGDFILRSTFDHPYPTTKIVWIPDERGHYPDLVATSGDYLRVWNVSNDEVKLETLLNNNKNSDYCAPLTSFDWNEVDPNILGTSSIDTTCTIWGLETGQPIGRVQ---GHVKTQLIAHDKEVYDIAFSRACSGRDTFASVGGDGSVRMFDLRHLEHSTIIYEEAQHTPLLRLAWNKQDPNYLSTFALDSMETIILDMRMPCTPVARLSNHRAAINGMAWAPHSSCHICTSADDHQALIWDIQPMPRAIEDPILAYTAEGEINNVKWATNQPDWIAISYNKSVEILRV 1138
            GK+KEIYKY APWTVY MNWSVRPDK+FRLALGSF+EEY+NKVQ+V LDEES +FI R+TFDHPYPTTK++WIPD +G YPDL+ATSGDYLRVW V   E +LE LLNNNKNSD+CAPLTSFDWNEVDP +LGTSSIDTTCTIWGLETGQ +GRV    GHVKTQLIAHDKEVYDIAFSRA  GRD FASVG DGSVRMFDLRHLEHSTIIYE+ QH PLLRL WNKQDPNYL+T A+D ME +ILD+R+PCTPVARL+NHRA +NG+AWAPHSSCHICT+ADDHQALIWDIQ MPRAIEDPILAYTAEGEINNV+WA+ QPDWIAI YN  +EILRV
Sbjct:    5 GKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342
The following BLAST results are available for this feature:
BLAST of TCONS_00072548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCAF70.000e+081.36DDB1- and CUL4-associated factor 7 OS=Homo sapiens... [more]
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