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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072545 ID=TCONS_00072545|Name=TCONS_00072545|organism=Clytia hemisphaerica|type=transcript|length=682bp
TGCTGAAAATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCCA
TTCAGTGCACTAGATAAGAAAGTCGACCATTCATTTAACGAGCTTtgtaa
acaagaaaaattgacaCAAAAACGAGAAAATATCATTTCATTATCGCTTT
CTGAAGCTGTTGGTGAAAGAAGGAATGTCACCGATTTTTACAACTGTTCC
TCATTACCATCCAAAAATATTGCTGACATCATGCTtctcttaaaaaacaa
acacaaacaTCGAAAAATACATTTCCTTTTTGATGAAGTGCCGCAAGAGC
TGTTCACAAAGACCTACTCAGAAACACTACGTGGCCGTTTGGAGAGTGAA
TTTCGAGAATCAGTTGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCG
AAAGATAACCGAGGAAGGCAAGGTCACCAATTCACAGGAGATTGATTTAA
AAAGCTCAGGCATGGAACTTTTCAAACTACCAACCACAATGAGGATGAGC
AATTGCTTACataaattgaaagaagtttTGGAAGGTGAAATCGAAAGTTC
GCCCTGCTCCATAAACTTAGAAGTTCGATCGAAAGgaaacGTTTTGCTAA
CAAAAGACGAATCTAACAAGGCCATAATCCACGAAACTCAACCAAATGGA
GATAGGCCAGGTGGCTCTCAATCAacaacaaa Run BLAST on NCBI protein sequence of TCONS_00072545-protein >TCONS_00072545-protein ID=TCONS_00072545-protein|Name=TCONS_00072545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
LKMSNQDLIINVTFDPFSALDKKVDHSFNELCKQEKLTQKRENIISLSLS
EAVGERRNVTDFYNCSSLPSKNIADIMLLLKNKHKHRKIHFLFDEVPQEL
FTKTYSETLRGRLESEFRESVVVIALQSVQKSRKITEEGKVTNSQEIDLK
SSGMELFKLPTTMRMSNCLHKLKEVLEGEIESSPCSINLEVRSKGNVLLT
KDESNKAIIHETQPNGDRPGGSQSTT Run BLAST on NCBI transcript from alignment at scaffold_8:200014..200827+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072545 ID=TCONS_00072545|Name=TCONS_00072545|organism=Clytia hemisphaerica|type=transcript|length=814bp|location=Sequence derived from alignment at scaffold_8:200014..200827+ (Clytia hemisphaerica)
TGCTGAAAATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCCA
TTCAGTGCACTAGATAAGAAAGTCGACCATTCATTTAACGAGCTTtgtaa
acaagaaaaattgacaCAAAAACGAGAAAATATCATTTCATTATCGCTTT
CTGAAGCTGTTGGTGAAAGAAGGAATGTCACCGATTTTTACAACTGTTCC
TCATTACCATCCAAAAATATTGCTGACATCATGCTtctcttaaaaaacaa
acacaaacaTCGAAAAATACATTTCCTTTTTGATGAAGTGCCGCAAGAGC
TGTTCACAAAGACCTACTCAGAAACACTACGTGGCCGTTTGGAGAGTGAA
TTTCGAGAATCAGTTGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCG
AAAGATAACCGAGGAAGGCAAGGTCACCAATTCACAGGAGATTGATTTAA
AAAGCTCAGGCATGGAACTTTTCAAACTACCAACCACAATGAGGATGAGC
AATTGCTTACataaattgaaagaagtttTGGAAGGTGAAATCGAAAGTTC
GCCCTGCTCCATAAACTTAGAAGTTCGATCGAAAGGTATAACATACCATT
TAAGTAACATTCTTTTATAATCGTGTTCAATTGCAACAGTGTGCAAGTAA
AATATGCTCATTTCCATTTATGACCGAAATATTTTCTTACTAgtacattt
taattttaatttttcaggaaacGTTTTGCTAACAAAAGACGAATCTAACA
AGGCCATAATCCACGAAACTCAACCAAATGGAGATAGGCCAGGTGGCTCT
CAATCAacaacaaa Coding sequence (CDS) from alignment at scaffold_8:200014..200827+ >TCONS_00072545 ID=TCONS_00072545|Name=TCONS_00072545|organism=Clytia hemisphaerica|type=CDS|length=1356bp|location=Sequence derived from alignment at scaffold_8:200014..200827+ (Clytia hemisphaerica)
CTGAAAATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCCATT
CAGTGCACTAGATAAGAAAGTCGACCATTCATTTAACGAGCTTtgtaaac
aagaaaaattgacaCAAAAACGAGAAAATATCATTTCATTATCGCTTTCT
GAAGCTGTTGGTGAAAGAAGGAATGTCACCGATTTTTACAACTGTTCCTC
ATTACCATCCAAAAATATTGCTGACATCATGCTtctcttaaaaaacaaac
acaaacaTCGAAAAATACATTTCCTTTTTGATGAAGTGCCGCAAGAGCTG
TTCACAAAGACCTACTCAGAAACACTACGTGGCCGTTTGGAGAGTGAATT
TCGAGAATCAGTTGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCGAA
AGATAACCGAGGAAGGCAAGGTCACCAATTCACAGGAGATTGATTTAAAA
AGCTCAGGCATGGAACTTTTCAAACTACCAACCACAATGAGGATGAGCAA
TTGCTTACataaattgaaagaagtttTGGAAGGTGAAATCGAAAGTTCGC
CCTGCTCCATAAACTTAGAAGTTCGATCGAAAGgaaacGTTTTGCTAACA
AAAGACGAATCTAACAAGGCCATAATCCACGAAACTCAACCAAATGGAGA
TAGGCCAGGTGGCTCTCAATCAacaacaCTGAAAATGAGCAACCAAGACT
TGATTATAAACGTTACTTTCGACCCATTCAGTGCACTAGATAAGAAAGTC
GACCATTCATTTAACGAGCTTtgtaaacaagaaaaattgacaCAAAAACG
AGAAAATATCATTTCATTATCGCTTTCTGAAGCTGTTGGTGAAAGAAGGA
ATGTCACCGATTTTTACAACTGTTCCTCATTACCATCCAAAAATATTGCT
GACATCATGCTtctcttaaaaaacaaacacaaacaTCGAAAAATACATTT
CCTTTTTGATGAAGTGCCGCAAGAGCTGTTCACAAAGACCTACTCAGAAA
CACTACGTGGCCGTTTGGAGAGTGAATTTCGAGAATCAGTTGTCGTGATT
GCCCTCCAAAGTGTACAGAAATCTCGAAAGATAACCGAGGAAGGCAAGGT
CACCAATTCACAGGAGATTGATTTAAAAAGCTCAGGCATGGAACTTTTCA
AACTACCAACCACAATGAGGATGAGCAATTGCTTACataaattgaaagaa
gtttTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCATAAACTTAGAAGT
TCGATCGAAAGgaaacGTTTTGCTAACAAAAGACGAATCTAACAAGGCCA
TAATCCACGAAACTCAACCAAATGGAGATAGGCCAGGTGGCTCTCAATCA
acaaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072545-exon-scaffold_8-1491911889:200014..200598 | TCONS_00072545-exon-scaffold_8-1491911889:200014..200598 | Clytia hemisphaerica | exon |
| TCONS_00072545-exon-scaffold_8-1510915933:200014..200598 | TCONS_00072545-exon-scaffold_8-1510915933:200014..200598 | Clytia hemisphaerica | exon |
| TCONS_00072545-exon-scaffold_8-1575043694:200014..200598 | TCONS_00072545-exon-scaffold_8-1575043694:200014..200598 | Clytia hemisphaerica | exon |
| TCONS_00072545-exon-scaffold_8-1491911889:200731..200827 | TCONS_00072545-exon-scaffold_8-1491911889:200731..200827 | Clytia hemisphaerica | exon |
| TCONS_00072545-exon-scaffold_8-1510915933:200731..200827 | TCONS_00072545-exon-scaffold_8-1510915933:200731..200827 | Clytia hemisphaerica | exon |
| TCONS_00072545-exon-scaffold_8-1575043694:200731..200827 | TCONS_00072545-exon-scaffold_8-1575043694:200731..200827 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:200014..200827 + |
Blast
The following BLAST results are available for this feature:
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