TCONS_00072544 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072544
Unique NameTCONS_00072544
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length556

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072544 ID=TCONS_00072544|Name=TCONS_00072544|organism=Clytia hemisphaerica|type=transcript|length=556bp
TGCTGAAAATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCCA
TTCAGTGCACTAGATAAGAAAGTCGACCATTCATTTAACGAGCTTtgtaa
acaagaaaaattgacaCAAAAACGAGAAAATATCATTTCATTATCGCTTT
CTGAAGCTGTTGGTGAAAGAAGGAATGTCACCGATTTTTACAACTGTTCC
TCATTACCATCCAAAAATATTGCTGACATCATGCTtctcttaaaaaacaa
acacaaacaTCGAAAAATACATTTCCTTTTTGATGAAGTGCCGCAAGAGC
TGTTCACAAAGACCTACTCAGAAACACTACGTGGCCGTTTGGAGAGTGAA
TTTCGAGAATCAGTTGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCG
AAAGATAACCGAGGAAGGCAAGGTCACCAATTCACAGGAGATTGATTTAA
AAAGCTCAGgaaacGTTTTGCTAACAAAAGACGAATCTAACAAGGCCATA
ATCCACGAAACTCAACCAAATGGAGATAGGCCAGGTGGCTCTCAATCAac
aacaaa
Run BLAST on NCBI

transcript from alignment at scaffold_8:200014..200827+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072544 ID=TCONS_00072544|Name=TCONS_00072544|organism=Clytia hemisphaerica|type=transcript|length=814bp|location=Sequence derived from alignment at scaffold_8:200014..200827+ (Clytia hemisphaerica)
TGCTGAAAATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCCA TTCAGTGCACTAGATAAGAAAGTCGACCATTCATTTAACGAGCTTtgtaa acaagaaaaattgacaCAAAAACGAGAAAATATCATTTCATTATCGCTTT CTGAAGCTGTTGGTGAAAGAAGGAATGTCACCGATTTTTACAACTGTTCC TCATTACCATCCAAAAATATTGCTGACATCATGCTtctcttaaaaaacaa acacaaacaTCGAAAAATACATTTCCTTTTTGATGAAGTGCCGCAAGAGC TGTTCACAAAGACCTACTCAGAAACACTACGTGGCCGTTTGGAGAGTGAA TTTCGAGAATCAGTTGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCG AAAGATAACCGAGGAAGGCAAGGTCACCAATTCACAGGAGATTGATTTAA AAAGCTCAGGCATGGAACTTTTCAAACTACCAACCACAATGAGGATGAGC AATTGCTTACataaattgaaagaagtttTGGAAGGTGAAATCGAAAGTTC GCCCTGCTCCATAAACTTAGAAGTTCGATCGAAAGGTATAACATACCATT TAAGTAACATTCTTTTATAATCGTGTTCAATTGCAACAGTGTGCAAGTAA AATATGCTCATTTCCATTTATGACCGAAATATTTTCTTACTAgtacattt taattttaatttttcaggaaacGTTTTGCTAACAAAAGACGAATCTAACA AGGCCATAATCCACGAAACTCAACCAAATGGAGATAGGCCAGGTGGCTCT CAATCAacaacaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045018XLOC_045018Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072544-exon-scaffold_8-1491911889:200014..200472TCONS_00072544-exon-scaffold_8-1491911889:200014..200472Clytia hemisphaericaexon
TCONS_00072544-exon-scaffold_8-1510915933:200014..200472TCONS_00072544-exon-scaffold_8-1510915933:200014..200472Clytia hemisphaericaexon
TCONS_00072544-exon-scaffold_8-1575043694:200014..200472TCONS_00072544-exon-scaffold_8-1575043694:200014..200472Clytia hemisphaericaexon
TCONS_00072544-exon-scaffold_8-1491911889:200731..200827TCONS_00072544-exon-scaffold_8-1491911889:200731..200827Clytia hemisphaericaexon
TCONS_00072544-exon-scaffold_8-1510915933:200731..200827TCONS_00072544-exon-scaffold_8-1510915933:200731..200827Clytia hemisphaericaexon
TCONS_00072544-exon-scaffold_8-1575043694:200731..200827TCONS_00072544-exon-scaffold_8-1575043694:200731..200827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:200014..200827 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.198497 0.18132 0 0.177718 0.229343 0 0.697437 0 0.193964 0.502849 0.780218 0.598308 0.260108 1.01406 0.208199 0 0 0 0 0 0 0 0.776851 0 0.72088 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top