TCONS_00072543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072543
Unique NameTCONS_00072543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072543 ID=TCONS_00072543|Name=TCONS_00072543|organism=Clytia hemisphaerica|type=transcript|length=605bp
NNTCTACATTCATTTCTCCTTATGTCACTTTCATTTAAAATTCCAAGAGA
CACCagccaaaacataaaataattcacaataattccaaaaaaaatgaaaa
acatatcTCAGTCAAGCAAATGAATTCTTGGTACTTATTTTAATTCATAg
cttgggtttctttactttgtGTATTCATggtattcaTGTCAGGATGATAG
CGGAACAGGAAtataatccatcaaaaatgaatttaaaacacATTCCCAAG
TTAGTTCAAGAAATGTCGTTTGGTGTTTGAGCTCTGAGTTTGGGAAGAAG
CACGTCAAATTATCAATATCATTGACcgattcataattttgataacaaaa
atcacattcatgGTCTTGAGAAGTCTGTTTACAGTCTCTTTGATATCGGA
ACTATTTGACAGGTTCAGTATCATATTCAatcaattcaaaaattttgtct
ttgttggtcACTAGATAGCCTATCATATGCTTCTGCTGCTGTTGTATTTT
GCTGGCCATGGGTCATGCTGTATCAtgatggacaaaataaaatcctccaA
AAATTCCTCACAACAAGATTCAAAGCAGATCATTCCCATAATTTTTGAGT
TTCNN
Run BLAST on NCBI

transcript from alignment at scaffold_8:175624..176372+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072543 ID=TCONS_00072543|Name=TCONS_00072543|organism=Clytia hemisphaerica|type=transcript|length=749bp|location=Sequence derived from alignment at scaffold_8:175624..176372+ (Clytia hemisphaerica)
NNTCTACATTCATTTCTCCTTATGTCACTTTCATTTAAAATTCCAAGAGA CACCagccaaaacataaaataattcacaataattccaaaaaaaatgaaaa acatatcTCAGTCAAGCAAATGAATTCTTGGTACTTATTTTAATTCATAg cttgggtttctttactttgtGTATTCATggtattcatgatgtaatctttt atacggacaCAAAATAATctggaactagtggcaaaatttgccaccagtct tttgttattttgccactagtttcggcttatctcgggtgcttccgtataaa agattaagtcatgaatatcatgaatatacaTGTCAGGATGATAGCGGAAC AGGAAtataatccatcaaaaatgaatttaaaacacATTCCCAAGTTAGTT CAAGAAATGTCGTTTGGTGTTTGAGCTCTGAGTTTGGGAAGAAGCACGTC AAATTATCAATATCATTGACcgattcataattttgataacaaaaatcaca ttcatgGTCTTGAGAAGTCTGTTTACAGTCTCTTTGATATCGGAACTATT TGACAGGTTCAGTATCATATTCAatcaattcaaaaattttgtctttgttg gtcACTAGATAGCCTATCATATGCTTCTGCTGCTGTTGTATTTTGCTGGC CATGGGTCATGCTGTATCAtgatggacaaaataaaatcctccaAAAATTC CTCACAACAAGATTCAAAGCAGATCATTCCCATAATTTTTGAGTTTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045017XLOC_045017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072543-exon-scaffold_8-1491911889:175624..175808TCONS_00072543-exon-scaffold_8-1491911889:175624..175808Clytia hemisphaericaexon
TCONS_00072543-exon-scaffold_8-1510915933:175624..175808TCONS_00072543-exon-scaffold_8-1510915933:175624..175808Clytia hemisphaericaexon
TCONS_00072543-exon-scaffold_8-1575043694:175624..175808TCONS_00072543-exon-scaffold_8-1575043694:175624..175808Clytia hemisphaericaexon
TCONS_00072543-exon-scaffold_8-1491911889:175953..176372TCONS_00072543-exon-scaffold_8-1491911889:175953..176372Clytia hemisphaericaexon
TCONS_00072543-exon-scaffold_8-1510915933:175953..176372TCONS_00072543-exon-scaffold_8-1510915933:175953..176372Clytia hemisphaericaexon
TCONS_00072543-exon-scaffold_8-1575043694:175953..176372TCONS_00072543-exon-scaffold_8-1575043694:175953..176372Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:175624..176372 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.86114 3.1407 2.55125 1.66606 7.08703 4.05113 4.05203 4.62788 3.91763 4.77445 5.50482 4.38631 4.28971 3.57098 3.04604 5.06291 5.16965 4.33619 4.92586 7.95385 6.58539 6.88577 8.14251 10.9687 3.04239 5.20591 8.4001 9.90161 7.97143 6.67486
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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