Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072539 ID=TCONS_00072539|Name=TCONS_00072539|organism=Clytia hemisphaerica|type=transcript|length=1124bp atacaccttatcggaaattccacaaaaacaattgcgctaaaatggatccg ttgaaattgggaggtaaacataaatggtAGTGCGCTTGGTTCTCGAGAGG TCAATATAATCCCATACAGACAAACCTCTTCAAAGAAAAGATTATATACT CACAGAGATTTTAGACAATAGAAATTGTGTTATTAAAATATTTCGTCAGT TTGAACACGATTTCAAGAATTGACGTTGGAATGACTTCTTCTTTAGGGTT GACGTCAAAATGAATCGGGGCAAATTGTCAAAAGGAAATTGCAAGAAGAA TGTCACTCTCTTGTAATCAAATGCATTAATAGAGACTTACCAACACCTGA TGTGATCTCTGGGAAACATGATCTGAAAATATCAACTTGGATTCTTTATG GATTGTTCTGATTGCTGCTTCATTACTGTAGATGGGTTTCATCTGAATAT ATCAACTTGTTACCAATACTGAAATTATGGATTTCAATGTGTAGAACTTG AACCTAGCCGGAGAAGATAACGCAACCTACAATATCCAATATTTGTACTA GTGTAATAAACATGCATGAAATACCTGAAAACTAACTTTTGATATGGAAG CATGGAATGATCTTTTTATTAGAgaatatcttttttctttatgataccaa attaaaaaaaaggcaATGTCATGATATGTAATggacaaaattttttgatt agcGACTTTAAAAAAGTCATCCATAAATCGTGCAAATTTCGCATTAGACC CAAAGAGTCTGTTAAATTTGCAAAGGACGTAATATCATTATTGACATTCA TTTGTTGAGCTATGGAAGATGGTAGTTATATATTTGTTTGTTCTTTTGAt cttgtttttttgattttatttgatcTGTTTGATTTATCTGTTTTTTCTAC TTCATAGACTAGATAAGTCTCATTGACTAAATGTACATTAACAAAGTCTG GAATACTTTAAGGCTTGAAATGCTTCTTGGTATTTATAATAAGCATGACA CTTATACATTATAAGGCTCGAGTATAAATTGGGTATTGTTTAAACATATG CTTAAAATTACACTATGCCTAATTTACCAATTTTGTGTCCATATACATAA AAGGCGCTATTGCATTTACTCAGA Run BLAST on NCBI transcript from alignment at scaffold_8:117882..119301+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072539 ID=TCONS_00072539|Name=TCONS_00072539|organism=Clytia hemisphaerica|type=transcript|length=1420bp|location=Sequence derived from alignment at scaffold_8:117882..119301+ (Clytia hemisphaerica) atacaccttatcggaaattccacaaaaacaattgcgctaaaatggatccg
ttgaaattgggaggtaaacataaatggtAGTGCGCTTGGTTCTCGAGAGG
TCAATATAATCCCATACAGACAAACCTCTTCAAAGAAAAGATTATATACT
CACAGAGATTTTAGACAATAGAAATTGTGTTATTAAAATATTTCGTCAGT
TTGAACACGATTTCAAGAATTGACGTTGGAATGACTTCTTCTTTAGGGTT
GACGTCAAAATGAATCGGGGCAAATTGTCAAAAGGAAATTGCAAGAAGAA
TGTCACTCTCTTGTAATCAAATGCATTAATAGAGACTTACCAGTAAATAA
ACACAATGATATAACTGTTTAGTCAGTCAATAGGAAAATATTGACCTTAT
CCTATGTACGGTTTGTACTTTGGCTGCAGTCAATATTTTCTCATATTGAC
CTCCAAACCAGTTATTATTGTATTTATAAATATTAATAACAATTTGCAGC
TGTATttatagaaaagtaaaaaaaaggaaTGTATTGACTAAGAACCCCCT
GAAGTTAATATAACTTTAAGTTTTGTTCTCTCTTTTGCTTTCCCTCCCAT
GTTCATATCATTTTAtgtgttatttattttttcaacagACACCTGATGTG
ATCTCTGGGAAACATGATCTGAAAATATCAACTTGGATTCTTTATGGATT
GTTCTGATTGCTGCTTCATTACTGTAGATGGGTTTCATCTGAATATATCA
ACTTGTTACCAATACTGAAATTATGGATTTCAATGTGTAGAACTTGAACC
TAGCCGGAGAAGATAACGCAACCTACAATATCCAATATTTGTACTAGTGT
AATAAACATGCATGAAATACCTGAAAACTAACTTTTGATATGGAAGCATG
GAATGATCTTTTTATTAGAgaatatcttttttctttatgataccaaatta
aaaaaaaggcaATGTCATGATATGTAATggacaaaattttttgattagcG
ACTTTAAAAAAGTCATCCATAAATCGTGCAAATTTCGCATTAGACCCAAA
GAGTCTGTTAAATTTGCAAAGGACGTAATATCATTATTGACATTCATTTG
TTGAGCTATGGAAGATGGTAGTTATATATTTGTTTGTTCTTTTGAtcttg
tttttttgattttatttgatcTGTTTGATTTATCTGTTTTTTCTACTTCA
TAGACTAGATAAGTCTCATTGACTAAATGTACATTAACAAAGTCTGGAAT
ACTTTAAGGCTTGAAATGCTTCTTGGTATTTATAATAAGCATGACACTTA
TACATTATAAGGCTCGAGTATAAATTGGGTATTGTTTAAACATATGCTTA
AAATTACACTATGCCTAATTTACCAATTTTGTGTCCATATACATAAAAGG
CGCTATTGCATTTACTCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072539-exon-scaffold_8-1491911889:117882..118223 | TCONS_00072539-exon-scaffold_8-1491911889:117882..118223 | Clytia hemisphaerica | exon |
TCONS_00072539-exon-scaffold_8-1510915933:117882..118223 | TCONS_00072539-exon-scaffold_8-1510915933:117882..118223 | Clytia hemisphaerica | exon |
TCONS_00072539-exon-scaffold_8-1575043694:117882..118223 | TCONS_00072539-exon-scaffold_8-1575043694:117882..118223 | Clytia hemisphaerica | exon |
TCONS_00072539-exon-scaffold_8-1491911889:118520..119301 | TCONS_00072539-exon-scaffold_8-1491911889:118520..119301 | Clytia hemisphaerica | exon |
TCONS_00072539-exon-scaffold_8-1510915933:118520..119301 | TCONS_00072539-exon-scaffold_8-1510915933:118520..119301 | Clytia hemisphaerica | exon |
TCONS_00072539-exon-scaffold_8-1575043694:118520..119301 | TCONS_00072539-exon-scaffold_8-1575043694:118520..119301 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_8 | supercontig | scaffold_8:117882..119301 + |
Blast
The following BLAST results are available for this feature:
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