TCONS_00072538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072538
Unique NameTCONS_00072538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072538 ID=TCONS_00072538|Name=TCONS_00072538|organism=Clytia hemisphaerica|type=transcript|length=2669bp
CACGTATATGTCGGTATGTTGACGGATGAAAGGGAACTTCTTCTGATGAA
GGTCAAGGAGTTCAAATATCGGTTGAAGAAACCTGTTCTTCAAAGATTCC
GATTGATGAAGAGCTGGAAACATGCAACGCTGATAACGCCTAACGACCTT
CATCAATGGGGACAGTCCTCTCATATCCAAGGGTTGATCAAATTCCTATC
AAAAATATCGTATACATCAAAACCAAAAATGGACAAAGTGACTATTTCGC
AAGTAAGGTTTTCTCTTTGAATAGTATTTActatcttttataagaatatc
agggtgaaaattggcaaaatcgtaagaataccctaagaatgcCCTCCAGG
GTTTTCATAgattttgataagcaaaatagTCGTTTTCTACAACTGTTTTT
TTTCGTATGACTTAAATTACGTTTTTCCAATTAgtgatttcatttctttt
ttcgaGAAGCCATTGTTAAAGTAATTTTGTTATCTCTATTTCTTCAGGCC
TGTGACATTCGCAATTTCCTAATGATCAGCATAACAATAATCAATAGCGC
AAGGGCTTCCAATCTGATCAACATTTCCTTACAAGACATCACCAAAGCAA
TCCCGACAACGCCCAACGATGGTTTCTGTGGGTTCGAATTTTCTTCGTCC
AAGTACAAAACGTGTTTAATCTACGGAGACAAAGTGATGTGGGTTAACCA
GGAACTCTACGAATTCATCACTGGTTACATCACTTTCATCAGGCCCTTGA
TCGCTCCCAAAGATTCAACATTGTTATTTACGAGTTCTTCAAAGAAGTCA
AAGATACGGGAAGAAGGAGATGAAGAGAAAGACCCGGGACAGATGGAACA
CGCGATGATTTCGTCAGCATTCACAAGATCGTTCCAAAAAGCTGATGTAT
TTGGTTCCACGGACAACAACAACAGGGTTTCTCCGTCACGCCTCCGCTGC
GCCGCCTGCACGGAGCTTGTTGGTGTTGATGGCGAAAACAGCGACGATGT
GGCCTTGCATTTCATAAAACACAGGTATAAATTCAGTTTCCGTTTGCAAT
ACTTGCCTCTGTCTGTTCTTTTTATCAACCATCTCTGTCCGAGAGAATAT
GTCTGATTTGGCAGGTTTAGATTTTTTAGTCAGTTTGTCATTCATGCAAC
GTTTGCTTTTACAGACCATCCACATCGCGGAAGTATTATACCGCTTATTG
GGAAAACAGAGAGGCACTTCGTATTTCAATGAAATGCTATTCTAAGTTTC
TTCCAAACGAAACGACGGCACGCATAGTGGCTGAACGAGATCGCATGCTC
TCCAAACAAAAGCCACCGACGAGAAAAGACATGCAAacatggtttacaaa
aatggcCAAGCTGTTGCAGAGCTCGACCGGGGAGAAGTTTACGGACGAAG
GCCTTGTCCAATGCTTCAATGATTTGGACGACGACGACGTTCATTGTGAG
TTTATGTTTAAACCCATTAAATTAATTAATATGAATTTACATGAACTGTT
TTACATCTGGAACTGAACAAAATAATGTGTGCTAGTCTGAATTACAATTC
GGGATATAGTACAGTCTGTGTTGATATCAATTTGTAATTCTCTATTTAAT
GTGTAATTTGTGTCatgtttgtttcaaatttttagttgaCAAGTCTCCGG
ATGTTCCATCAACAGCACAAAGTTCCATCAAAGTACCAGGACCTTTTCAT
CGTGGCTTGAAAGGAACTTCTACTTCAACTTCTACTCCAAAAAGAAAGGC
ACCAGAAACTGGTAAGGTACCTTTTGTATCAAATTACcattgaattttat
tatttataccTGGCATTGGTGTCCGAGAATCCACCCAAAATGCACATCAA
TATATGTCTGACTggtctttcttttttaaagtgCTCATACTACATAAAAG
GCTCTCATTAAACTTATTAATTCTTTTCTGCTCATTCAGTACCTGCTAAC
CCTGACGAATTGACAAAAAACGCTAACATCAACGTTCCAAGTTCATCGAA
AAAGGCACCAGAAACTGGTAAGTTACCTATTGTATGAAATTACCatgaaa
tttcattatttttacccGGCATAGGTGTCCGAGAATCCACCCAAAATACA
CATCAATCTATGTCTGACTGGTCTTTTTTTAAAGTGCTCATACTACATAA
AAGGCTCTCATTAAACTTATCTATTTTTTTCTTGCTCATTCAGTACCTAA
AAAACTCATACAATTTGTTTGCACCAATTATCAACTGTTTTTGAAATCTA
TATAACTACCTTTTCAGATGTTAGTGAAGTTTACCCACTATTAGGTCTAA
GATGGAATATGGTCTTAGGTAGAATAAGAAGGGgttggatttttttcaaa
agctaaTCGCCAGGGGTTGGATTAAAAATGTCCCGTGTAGAAAAATTGAC
CGGAGGAAGTTTTGCAAATATTCTTTCGAAAATATAATCGACTACTTAGT
CATTAAAGGACGAGATATTTAATGAGATgtcttttttattattaaacGCG
AAAAAAAGAATATACAAAGCTATCTGCCTTATGAgcagatttttgatttt
tgtttataCTCTCATTGCCAATCAGTTTgctgatatttttcaagttgacg
ataatATGAAATacttgaatttcattttttccttaTGTTTAGAAGTCAGC
AAATTTTGATGGTTTGTCG
Run BLAST on NCBI

transcript from alignment at scaffold_8:36162..38961+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072538 ID=TCONS_00072538|Name=TCONS_00072538|organism=Clytia hemisphaerica|type=transcript|length=2800bp|location=Sequence derived from alignment at scaffold_8:36162..38961+ (Clytia hemisphaerica)
CACGTATATGTCGGTATGTTGACGGATGAAAGGGAACTTCTTCTGATGAA GGTCAAGGAGTTCAAATATCGGTTGAAGAAACCTGTTCTTCAAAGGTAAA TTGCAGTTCTTTTATAAGTCTTCCTGTCTCTCCGTTTAAATCTTGGAAAA AAGGCTTGTTCAAAGCAAGTTATCTTTTCAGACCCATTTTTGGAGTTTAT TTAATGCTCGTCGAACCTTTGTTTAGATTCCGATTGATGAAGAGCTGGAA ACATGCAACGCTGATAACGCCTAACGACCTTCATCAATGGGGACAGTCCT CTCATATCCAAGGGTTGATCAAATTCCTATCAAAAATATCGTATACATCA AAACCAAAAATGGACAAAGTGACTATTTCGCAAGTAAGGTTTTCTCTTTG AATAGTATTTActatcttttataagaatatcagggtgaaaattggcaaaa tcgtaagaataccctaagaatgcCCTCCAGGGTTTTCATAgattttgata agcaaaatagTCGTTTTCTACAACTGTTTTTTTTCGTATGACTTAAATTA CGTTTTTCCAATTAgtgatttcatttcttttttcgaGAAGCCATTGTTAA AGTAATTTTGTTATCTCTATTTCTTCAGGCCTGTGACATTCGCAATTTCC TAATGATCAGCATAACAATAATCAATAGCGCAAGGGCTTCCAATCTGATC AACATTTCCTTACAAGACATCACCAAAGCAATCCCGACAACGCCCAACGA TGGTTTCTGTGGGTTCGAATTTTCTTCGTCCAAGTACAAAACGTGTTTAA TCTACGGAGACAAAGTGATGTGGGTTAACCAGGAACTCTACGAATTCATC ACTGGTTACATCACTTTCATCAGGCCCTTGATCGCTCCCAAAGATTCAAC ATTGTTATTTACGAGTTCTTCAAAGAAGTCAAAGATACGGGAAGAAGGAG ATGAAGAGAAAGACCCGGGACAGATGGAACACGCGATGATTTCGTCAGCA TTCACAAGATCGTTCCAAAAAGCTGATGTATTTGGTTCCACGGACAACAA CAACAGGGTTTCTCCGTCACGCCTCCGCTGCGCCGCCTGCACGGAGCTTG TTGGTGTTGATGGCGAAAACAGCGACGATGTGGCCTTGCATTTCATAAAA CACAGGTATAAATTCAGTTTCCGTTTGCAATACTTGCCTCTGTCTGTTCT TTTTATCAACCATCTCTGTCCGAGAGAATATGTCTGATTTGGCAGGTTTA GATTTTTTAGTCAGTTTGTCATTCATGCAACGTTTGCTTTTACAGACCAT CCACATCGCGGAAGTATTATACCGCTTATTGGGAAAACAGAGAGGCACTT CGTATTTCAATGAAATGCTATTCTAAGTTTCTTCCAAACGAAACGACGGC ACGCATAGTGGCTGAACGAGATCGCATGCTCTCCAAACAAAAGCCACCGA CGAGAAAAGACATGCAAacatggtttacaaaaatggcCAAGCTGTTGCAG AGCTCGACCGGGGAGAAGTTTACGGACGAAGGCCTTGTCCAATGCTTCAA TGATTTGGACGACGACGACGTTCATTGTGAGTTTATGTTTAAACCCATTA AATTAATTAATATGAATTTACATGAACTGTTTTACATCTGGAACTGAACA AAATAATGTGTGCTAGTCTGAATTACAATTCGGGATATAGTACAGTCTGT GTTGATATCAATTTGTAATTCTCTATTTAATGTGTAATTTGTGTCatgtt tgtttcaaatttttagttgaCAAGTCTCCGGATGTTCCATCAACAGCACA AAGTTCCATCAAAGTACCAGGACCTTTTCATCGTGGCTTGAAAGGAACTT CTACTTCAACTTCTACTCCAAAAAGAAAGGCACCAGAAACTGGTAAGGTA CCTTTTGTATCAAATTACcattgaattttattatttataccTGGCATTGG TGTCCGAGAATCCACCCAAAATGCACATCAATATATGTCTGACTggtctt tcttttttaaagtgCTCATACTACATAAAAGGCTCTCATTAAACTTATTA ATTCTTTTCTGCTCATTCAGTACCTGCTAACCCTGACGAATTGACAAAAA ACGCTAACATCAACGTTCCAAGTTCATCGAAAAAGGCACCAGAAACTGGT AAGTTACCTATTGTATGAAATTACCatgaaatttcattatttttacccGG CATAGGTGTCCGAGAATCCACCCAAAATACACATCAATCTATGTCTGACT GGTCTTTTTTTAAAGTGCTCATACTACATAAAAGGCTCTCATTAAACTTA TCTATTTTTTTCTTGCTCATTCAGTACCTAAAAAACTCATACAATTTGTT TGCACCAATTATCAACTGTTTTTGAAATCTATATAACTACCTTTTCAGAT GTTAGTGAAGTTTACCCACTATTAGGTCTAAGATGGAATATGGTCTTAGG TAGAATAAGAAGGGgttggatttttttcaaaagctaaTCGCCAGGGGTTG GATTAAAAATGTCCCGTGTAGAAAAATTGACCGGAGGAAGTTTTGCAAAT ATTCTTTCGAAAATATAATCGACTACTTAGTCATTAAAGGACGAGATATT TAATGAGATgtcttttttattattaaacGCGAAAAAAAGAATATACAAAG CTATCTGCCTTATGAgcagatttttgatttttgtttataCTCTCATTGCC AATCAGTTTgctgatatttttcaagttgacgataatATGAAATacttgaa tttcattttttccttaTGTTTAGAAGTCAGCAAATTTTGATGGTTTGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045015XLOC_045015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072538-exon-scaffold_8-1491911889:36162..36256TCONS_00072538-exon-scaffold_8-1491911889:36162..36256Clytia hemisphaericaexon
TCONS_00072538-exon-scaffold_8-1510915933:36162..36256TCONS_00072538-exon-scaffold_8-1510915933:36162..36256Clytia hemisphaericaexon
TCONS_00072538-exon-scaffold_8-1575043694:36162..36256TCONS_00072538-exon-scaffold_8-1575043694:36162..36256Clytia hemisphaericaexon
TCONS_00072538-exon-scaffold_8-1491911889:36388..38961TCONS_00072538-exon-scaffold_8-1491911889:36388..38961Clytia hemisphaericaexon
TCONS_00072538-exon-scaffold_8-1510915933:36388..38961TCONS_00072538-exon-scaffold_8-1510915933:36388..38961Clytia hemisphaericaexon
TCONS_00072538-exon-scaffold_8-1575043694:36388..38961TCONS_00072538-exon-scaffold_8-1575043694:36388..38961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:36162..38961 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0452991 0.0310846 0 0.0941271 0 0.0190358 0.0415453 0 0.861671 0.0378577 0.0494211 0.0738766 0.0327467 0.0104594 0 0 0 0 0.0411281 0 0 0.0519248 0.0344264 0.150575 0 0.0422093 0 0.0326175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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