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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072537 ID=TCONS_00072537|Name=TCONS_00072537|organism=Clytia hemisphaerica|type=transcript|length=3733bp
GGGTATTACTACTTGATTGACTTGGACTATCCTCAATTCTATTTCAGTAC
TATTTCTTCGGCGATACAAGTGTACCAATCGAAATCACAAGAGTCTTGAC
AGTTTCATGGGCAAATTTAGAAGTTTCAAATTAAAAAGACAGGGTTTGAA
TTAATCTGATTGGAGAAAACTGATGTAGTCGGGTGGATAAATATTCCCCA
CACTACATTTAAAGTAGAAAAGAGCTAATCAGGGAGGATCCAGACAACAG
GTATCACAATCATCACAAAGATGTATGTTTGATTCTTGGTATCAGATTAT
TTCGATCAAAGGAGACATGGCTTTTTCCACACAAGCAAAAAAGAAGATGA
CATTCATTGAACTCATAGACCAAAGACCAATGACACGGGCAAATTGACGG
GAGAAGGCTTCGCACGCTGTATTGCGGATGAGATTACTAACATAGAATAA
AAGATGGCCAAGTTCGTGcgctttttgaaaaaagccgGAAAATAACAATT
TCAGACGAAAACATTCCGAACTTAAAAGACTTGCATCATTACAGTTGAAG
GTAAACCATGCGAAAAGTAAGGATTTTATCCTctaattataaaaatttat
gCATTTAAAATTGCATTTATGTTTTTTACAACAACATATCCCTGAGATTG
TAGGACAATATGCAGCCAAGAATTTTTTGAAGTGTTATATTTACCAAACT
GTTATTCTCTTTGTTTAGGATATTTTGGATGACTTCAAACTATGGCTGAA
AACTTGCTACGGAAAGTCTAGTTCTGCTGCACAAGCCATCCGGAATTCAG
TGGAATTCATCTGGAAGACCATCGATCCCAGCCAGTCAACCGTCAAAATC
CAGCTCTTCGACGTGGATAAACTAGAAGACGACTTCTTCAACCCGAAGTT
GGCCATTGCAGTTGTAAGTCACcatatttttaatttaatcTACTTAGACT
GGGGCTCTTGCAAATTTGGAAATTCGGGATATACAGTAACCAAAAAATGA
TTCATCCTAACTTGTTTTAAGTTCTCTAGTCTGCCCCTCTTAatcttaaa
aatttataaatatatatTGCAATAGAATAAGGGATATATCAAAATCGAAT
GAAAAGCTGTCCATtgcattttcttttcatttctttcttttttcaggcAC
AATCTAAGAAACCAAAAGACGAGCAAAGTCCACACCTTACAGCGGGTACA
CTGTCAGGCAAATTGGACAGTCTAACATCTCTGTGTGCGTACAGCAGCTT
GAAACACGTATATGTCGGTATGTTGACGGATGAAAGGGAACTTCTTCTGA
TGAAGGTCAAGGAGTTTAAATATCGGTTGAAGAAACCTGTTCTTCAAAGA
TTCCGATTGATGAAGAGCTGGAAACATGCAACGCTGATAACGCCTAACGA
CCTTCATCAATGGGGACAGTCCTCTCATATCCAAGGGTTGATCAAATTCC
TATCAAAAATATCGTATACATCAAAACCAAAAATGGACAAAGTGACTATT
TCGCAAGTAAGGTTTTCTCTTTGAATAGTATTTActatcttttataagaa
tatcagggtgaaaattggcaaaatcgtaagaataccctaagaatgcCCTC
CAGGGTTTTCATAgattttgataagcaaaatagTCGTTTTCTACAACTGT
TTTTTTTCGTATGACTTAAATTACGTTTTTCCAATTAgtgatttcatttc
ttttttcgaGAAGCCATTGTTAAAGTAATTTTGTTATCTCTATTTCTTCA
GGCCTGTGACATTCGCAATTTCCTAATGATCAGCATAACAATAATCAATA
GCGCAAGGGCTTCCAATCTGATCAACATTTCCTTACAAGACATCACCAAA
GCAATCCCGACAACGCCCAACGATGGTTTCTGTGGGTTCGAATTTTCTTC
GTCCAAGTACAAAACGTGTTTAATCTACGGAGACAAAGTGATGTGGGTTA
ACCAGGAACTCTACGAATTCATCACTGGTTACATCACTTTCATCAGGCCC
TTGATCGCTCCCAAAGATTCAACATTGTTATTTACGAGTTCTTCAAAGAA
GTCAAAGATACGGGAAGAAGGAGATGAAGAGAAAGACCCGGGACAGATGG
AACACGCGATGATTTCGTCAGCATTCACAAGATCGTTCCAAAAAGCTGAT
GTATTTGGTTCCACGGACAACAACAACAGGGTTTCTCCGTCACGCCTCCG
CTGCGCCGCCTGCACGGAGCTTGTTGGTGTTGATGGCGAAAACAGCGACG
ATGTGGCCTTGCATTTCATAAAACACAGGTATAAATTCAGTTTCCGTTTG
CAATACTTGCCTCTGTCTGTTCTTTTTATCAACCATCTCTGTCCGAGAGA
ATATGTCTGATTTGGCAGGTTTAGATTTTTTAGTCAGTTTGTCATTCATG
CAACGTTTGCTTTTACAGACCATCCACATCGCGGAAGTATTATACCGCTT
ATTGGGAAAACAGAGAGGCACTTCGTATTTCAATGAAATGCTATTCTAAG
TTTCTTCCAAACGAAACGACGGCACGCATAGTGGCTGAACGAGATCGCAT
GCTCTCCAAACAAAAGCCACCGACGAGAAAAGACATGCAAacatggttta
caaaaatggcCAAGCTGTTGCAGAGCTCGACCGGGGAGAAGTTTACGGAC
GAAGGCCTTGTCCAATGCTTCAATGATTTGGACGACGACGACGTTCATTt
tgaCAAGTCTCCGGATGTTCCATCAACAGCACAAAGTTCCATCAAAGTAC
CAGGACCTTTTCATCGTGGCTTGAAAGGAACTTCTACTTCAACTTCTACT
CCAAAAAGAAAGGCACCAGAAACTGGTAAGGTACCTTTTGTATCAAATTA
CcattgaattttattatttataccTGGCATTGGTGTCCGAGAATCCACCC
AAAATGCACATCAATATATGTCTGACTggtctttcttttttaaagtgCTC
ATACTACATAAAAGGCTCTCATTAAACTTATTAATTCTTTTCTGCTCATT
CAGTACCTGCTAACCCTGACGAATTGACAAAAAACGCTAACATCAACGTT
CCAAGTTCATCGAAAAAGGCACCAGAAACTGGTAAGTTACCTATTGTATG
AAATTACCatgaaatttcattatttttacccGGCATAGGTGTCCGAGAAT
CCACCCAAAATACACATCAATCTATGTCTGACTGGTCTTTTTTTAAAGTG
CTCATACTACATAAAAGGCTCTCATTAAACTTATCTATTTTTTTCTTGCT
CATTCAGTACCTAAAAAACTCATACAATTTGTTTGCACCAATTATCAACT
GTTTTTGAAATCTATATAACTACCTTTTCAGATGTTAGTGAAGTTTACCC
ACTATTAGGTCTAAGATGGAATATGGTCTTAGGTAGAATAAGAAGGGgtt
ggatttttttcaaaagctaaTCGCCAGGGGTTGGATTAAAAATGTCCCGT
GTAGAAAAATTGACCGGAGGAAGTTTTGCAAATATTCTTTCGAAAATATA
ATCGACTACTTAGTCATTAAAGGACGAGATATTTAATGAGATgtcttttt
tattattaaacGCGAAAAAAAGAATATACAAAGCTATCTGCCTTATGAgc
agatttttgatttttgtttataCTCTCATTGCCAATCAGTTTgctgatat
ttttcaagttgacgataatATGAAATacttgaatttcattttttccttaT
GTTTAGAAGTCAGCAAATTTTGATGGTTTGTCG Run BLAST on NCBI protein sequence of TCONS_00072537-protein >TCONS_00072537-protein ID=TCONS_00072537-protein|Name=TCONS_00072537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MISITIINSARASNLINISLQDITKAIPTTPNDGFCGFEFSSSKYKTCLI
YGDKVMWVNQELYEFITGYITFIRPLIAPKDSTLLFTSSSKKSKIREEGD
EEKDPGQMEHAMISSAFTRSFQKADVFGSTDNNNRVSPSRLRCAACTELV
GVDGENSDDVALHFIKHRYKFSFRLQYLPLSVLFINHLCPREYV Run BLAST on NCBI transcript from alignment at scaffold_8:34380..38961+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072537 ID=TCONS_00072537|Name=TCONS_00072537|organism=Clytia hemisphaerica|type=transcript|length=4582bp|location=Sequence derived from alignment at scaffold_8:34380..38961+ (Clytia hemisphaerica)
GGGTATTACTACTTGATTGACTTGGACTATCCTCAATTCTATTTCAGTAC
TATTTCTTCGGCGATACAAGTGTACCAATCGAAATCACAAGAGTCTTGAC
AGTTTCATGGGCAAATTTAGAAGTTTCAAATTAAAAAGACAGGGTTTGAA
TTAATCTGATTGGAGAAAACTGATGTAGTCGGGTGGATAAATATTCCCCA
CACTACATTTAAAGTAGAAAAGAGCTAATCAGGGAGGATCCAGACAACAG
GTATCACAATCATCACAAAGATGTATGTTTGATTCTTGGTATCAGATTAT
TTCGATCAAAGGAGACATGGCTTTTTCCACACAAGCAAAAAAGAAGATGA
CATTCATTGAACTCATAGACCAAAGACCAATGACACGGGCAAATTGACGG
GAGAAGGCTTCGCACGCTGTATTGCGGATGAGATTACTAACATAGAATAA
AAGATGGCCAAGTTCGTGcgctttttgaaaaaagccgGAAAATAACAATT
TCAGACGAAAACATTCCGAACTTAAAAGACTTGCATCATTACAGTTGAAG
GTAAACCATGCGAAAAGTAAGGATTTTATCCTctaattataaaaatttat
gCATTTAAAATTGCATTTATGTTTTTTACAACAACATATCCCTGAGATTG
TAGGACAATATGCAGCCAAGAATTTTTTGAAGTGTTATATTTACCAAACT
GTTATTCTCTTTGTTTAGGATATTTTGGATGACTTCAAACTATGGCTGAA
AACTTGCTACGGAAAGTCTAGTTCTGCTGCACAAGCCATCCGGAATTCAG
TGGAATTCATCTGGAAGACCATCGATCCCAGCCAGTCAACCGTCAAAATC
CAGCTCTTCGACGTGGATAAACTAGAAGACGACTTCTTCAACCCGAAGTT
GGCCATTGCAGTTGTAAGTCACcatatttttaatttaatcTACTTAGACT
GGGGCTCTTGCAAATTTGGAAATTCGGGATATACAGTAACCAAAAAATGA
TTCATCCTAACTTGTTTTAAGTTCTCTAGTCTGCCCCTCTTAatcttaaa
aatttataaatatatatTGCAATAGAATAAGGGATATATCAAAATCGAAT
GAAAAGCTGTCCATtgcattttcttttcatttctttcttttttcaggcAC
AATCTAAGAAACCAAAAGACGAGCAAAGTCCACACCTTACAGCGGGTACA
CTGTCAGGCAAATTGGACAGTCTAACATCTCTGTGTGCGTACAGCAGCTT
GAAACACGTATATGTCGGTATGTTGACGGATGAAAGGGAACTTCTTCTGA
TGAAGGTCAAGGAGTTTAAATATCGGTTGAAGAAACCTGTTCTTCAAAGG
TAAATTGCAGttctttttatagttttttcagttattttatgTTCTTTTGC
AGTTCTAGTCTTCCTGTCTCTCCGTTTAAATCTTGGAAAAAAGGCTTGTT
CAAAGCAAGTTATCTTTTCAGAACCATTTTCGCAGTTTATTTAATGCTCG
TCGAACCTTtgtttagattccaatttaTGAAGAGCTGGAAACATGCAACG
CTGATAACGCCTAACGACCTTCATCAATGGGGAGAGTCCTCTCATATCCA
AGGGTTGATCAAATTCCTATCAAAAATATCGTATACATCAAAACCAAAAA
TGGACAAAGTGACTATTTCGCAAGTAAGGTTTTCTCTTTGAATAGTATTT
Actatcttttataagaatatcagggtgaaaattggcaaagtcgtaagaat
accctaagaatNGTGCGTACAGCAGCTTGAAACACGTATATGTCGGTATG
TTGACGGATGAAAGGGAACTTCTTCTGATGAAGGTCAAGGAGTTCAAATA
TCGGTTGAAGAAACCTGTTCTTCAAAGGTAAATTGCAGTTCTTTTATAAG
TCTTCCTGTCTCTCCGTTTAAATCTTGGAAAAAAGGCTTGTTCAAAGCAA
GTTATCTTTTCAGACCCATTTTTGGAGTTTATTTAATGCTCGTCGAACCT
TTGTTTAGATTCCGATTGATGAAGAGCTGGAAACATGCAACGCTGATAAC
GCCTAACGACCTTCATCAATGGGGACAGTCCTCTCATATCCAAGGGTTGA
TCAAATTCCTATCAAAAATATCGTATACATCAAAACCAAAAATGGACAAA
GTGACTATTTCGCAAGTAAGGTTTTCTCTTTGAATAGTATTTActatctt
ttataagaatatcagggtgaaaattggcaaaatcgtaagaataccctaag
aatgcCCTCCAGGGTTTTCATAgattttgataagcaaaatagTCGTTTTC
TACAACTGTTTTTTTTCGTATGACTTAAATTACGTTTTTCCAATTAgtga
tttcatttcttttttcgaGAAGCCATTGTTAAAGTAATTTTGTTATCTCT
ATTTCTTCAGGCCTGTGACATTCGCAATTTCCTAATGATCAGCATAACAA
TAATCAATAGCGCAAGGGCTTCCAATCTGATCAACATTTCCTTACAAGAC
ATCACCAAAGCAATCCCGACAACGCCCAACGATGGTTTCTGTGGGTTCGA
ATTTTCTTCGTCCAAGTACAAAACGTGTTTAATCTACGGAGACAAAGTGA
TGTGGGTTAACCAGGAACTCTACGAATTCATCACTGGTTACATCACTTTC
ATCAGGCCCTTGATCGCTCCCAAAGATTCAACATTGTTATTTACGAGTTC
TTCAAAGAAGTCAAAGATACGGGAAGAAGGAGATGAAGAGAAAGACCCGG
GACAGATGGAACACGCGATGATTTCGTCAGCATTCACAAGATCGTTCCAA
AAAGCTGATGTATTTGGTTCCACGGACAACAACAACAGGGTTTCTCCGTC
ACGCCTCCGCTGCGCCGCCTGCACGGAGCTTGTTGGTGTTGATGGCGAAA
ACAGCGACGATGTGGCCTTGCATTTCATAAAACACAGGTATAAATTCAGT
TTCCGTTTGCAATACTTGCCTCTGTCTGTTCTTTTTATCAACCATCTCTG
TCCGAGAGAATATGTCTGATTTGGCAGGTTTAGATTTTTTAGTCAGTTTG
TCATTCATGCAACGTTTGCTTTTACAGACCATCCACATCGCGGAAGTATT
ATACCGCTTATTGGGAAAACAGAGAGGCACTTCGTATTTCAATGAAATGC
TATTCTAAGTTTCTTCCAAACGAAACGACGGCACGCATAGTGGCTGAACG
AGATCGCATGCTCTCCAAACAAAAGCCACCGACGAGAAAAGACATGCAAa
catggtttacaaaaatggcCAAGCTGTTGCAGAGCTCGACCGGGGAGAAG
TTTACGGACGAAGGCCTTGTCCAATGCTTCAATGATTTGGACGACGACGA
CGTTCATTGTGAGTTTATGTTTAAACCCATTAAATTAATTAATATGAATT
TACATGAACTGTTTTACATCTGGAACTGAACAAAATAATGTGTGCTAGTC
TGAATTACAATTCGGGATATAGTACAGTCTGTGTTGATATCAATTTGTAA
TTCTCTATTTAATGTGTAATTTGTGTCatgtttgtttcaaatttttagtt
gaCAAGTCTCCGGATGTTCCATCAACAGCACAAAGTTCCATCAAAGTACC
AGGACCTTTTCATCGTGGCTTGAAAGGAACTTCTACTTCAACTTCTACTC
CAAAAAGAAAGGCACCAGAAACTGGTAAGGTACCTTTTGTATCAAATTAC
cattgaattttattatttataccTGGCATTGGTGTCCGAGAATCCACCCA
AAATGCACATCAATATATGTCTGACTggtctttcttttttaaagtgCTCA
TACTACATAAAAGGCTCTCATTAAACTTATTAATTCTTTTCTGCTCATTC
AGTACCTGCTAACCCTGACGAATTGACAAAAAACGCTAACATCAACGTTC
CAAGTTCATCGAAAAAGGCACCAGAAACTGGTAAGTTACCTATTGTATGA
AATTACCatgaaatttcattatttttacccGGCATAGGTGTCCGAGAATC
CACCCAAAATACACATCAATCTATGTCTGACTGGTCTTTTTTTAAAGTGC
TCATACTACATAAAAGGCTCTCATTAAACTTATCTATTTTTTTCTTGCTC
ATTCAGTACCTAAAAAACTCATACAATTTGTTTGCACCAATTATCAACTG
TTTTTGAAATCTATATAACTACCTTTTCAGATGTTAGTGAAGTTTACCCA
CTATTAGGTCTAAGATGGAATATGGTCTTAGGTAGAATAAGAAGGGgttg
gatttttttcaaaagctaaTCGCCAGGGGTTGGATTAAAAATGTCCCGTG
TAGAAAAATTGACCGGAGGAAGTTTTGCAAATATTCTTTCGAAAATATAA
TCGACTACTTAGTCATTAAAGGACGAGATATTTAATGAGATgtctttttt
attattaaacGCGAAAAAAAGAATATACAAAGCTATCTGCCTTATGAgca
gatttttgatttttgtttataCTCTCATTGCCAATCAGTTTgctgatatt
tttcaagttgacgataatATGAAATacttgaatttcattttttccttaTG
TTTAGAAGTCAGCAAATTTTGATGGTTTGTCG Coding sequence (CDS) from alignment at scaffold_8:34380..38961+ >TCONS_00072537 ID=TCONS_00072537|Name=TCONS_00072537|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_8:34380..38961+ (Clytia hemisphaerica)
ATGATCAGCATAACAATAATCAATAGCGCAAGGGCTTCCAATCTGATCAA
CATTTCCTTACAAGACATCACCAAAGCAATCCCGACAACGCCCAACGATG
GTTTCTGTGGGTTCGAATTTTCTTCGTCCAAGTACAAAACGTGTTTAATC
TACGGAGACAAAGTGATGTGGGTTAACCAGGAACTCTACGAATTCATCAC
TGGTTACATCACTTTCATCAGGCCCTTGATCGCTCCCAAAGATTCAACAT
TGTTATTTACGAGTTCTTCAAAGAAGTCAAAGATACGGGAAGAAGGAGAT
GAAGAGAAAGACCCGGGACAGATGGAACACGCGATGATTTCGTCAGCATT
CACAAGATCGTTCCAAAAAGCTGATGTATTTGGTTCCACGGACAACAACA
ACAGGGTTTCTCCGTCACGCCTCCGCTGCGCCGCCTGCACGGAGCTTGTT
GGTGTTGATGGCGAAAACAGCGACGATGTGGCCTTGCATTTCATAAAACA
CAGGTATAAATTCAGTTTCCGTTTGCAATACTTGCCTCTGTCTGTTCTTT
TTATCAACCATCTCTGTCCGAGAGAATATGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072537-exon-scaffold_8-1491911889:34380..35728 | TCONS_00072537-exon-scaffold_8-1491911889:34380..35728 | Clytia hemisphaerica | exon |
| TCONS_00072537-exon-scaffold_8-1510915933:34380..35728 | TCONS_00072537-exon-scaffold_8-1510915933:34380..35728 | Clytia hemisphaerica | exon |
| TCONS_00072537-exon-scaffold_8-1575043694:34380..35728 | TCONS_00072537-exon-scaffold_8-1575043694:34380..35728 | Clytia hemisphaerica | exon |
| TCONS_00072537-exon-scaffold_8-1491911889:36388..37737 | TCONS_00072537-exon-scaffold_8-1491911889:36388..37737 | Clytia hemisphaerica | exon |
| TCONS_00072537-exon-scaffold_8-1510915933:36388..37737 | TCONS_00072537-exon-scaffold_8-1510915933:36388..37737 | Clytia hemisphaerica | exon |
| TCONS_00072537-exon-scaffold_8-1575043694:36388..37737 | TCONS_00072537-exon-scaffold_8-1575043694:36388..37737 | Clytia hemisphaerica | exon |
| TCONS_00072537-exon-scaffold_8-1491911889:37928..38961 | TCONS_00072537-exon-scaffold_8-1491911889:37928..38961 | Clytia hemisphaerica | exon |
| TCONS_00072537-exon-scaffold_8-1510915933:37928..38961 | TCONS_00072537-exon-scaffold_8-1510915933:37928..38961 | Clytia hemisphaerica | exon |
| TCONS_00072537-exon-scaffold_8-1575043694:37928..38961 | TCONS_00072537-exon-scaffold_8-1575043694:37928..38961 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:34380..38961 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013762 | Integrase-like_cat |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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