TCONS_00072537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072537
Unique NameTCONS_00072537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072537 ID=TCONS_00072537|Name=TCONS_00072537|organism=Clytia hemisphaerica|type=transcript|length=3733bp
GGGTATTACTACTTGATTGACTTGGACTATCCTCAATTCTATTTCAGTAC
TATTTCTTCGGCGATACAAGTGTACCAATCGAAATCACAAGAGTCTTGAC
AGTTTCATGGGCAAATTTAGAAGTTTCAAATTAAAAAGACAGGGTTTGAA
TTAATCTGATTGGAGAAAACTGATGTAGTCGGGTGGATAAATATTCCCCA
CACTACATTTAAAGTAGAAAAGAGCTAATCAGGGAGGATCCAGACAACAG
GTATCACAATCATCACAAAGATGTATGTTTGATTCTTGGTATCAGATTAT
TTCGATCAAAGGAGACATGGCTTTTTCCACACAAGCAAAAAAGAAGATGA
CATTCATTGAACTCATAGACCAAAGACCAATGACACGGGCAAATTGACGG
GAGAAGGCTTCGCACGCTGTATTGCGGATGAGATTACTAACATAGAATAA
AAGATGGCCAAGTTCGTGcgctttttgaaaaaagccgGAAAATAACAATT
TCAGACGAAAACATTCCGAACTTAAAAGACTTGCATCATTACAGTTGAAG
GTAAACCATGCGAAAAGTAAGGATTTTATCCTctaattataaaaatttat
gCATTTAAAATTGCATTTATGTTTTTTACAACAACATATCCCTGAGATTG
TAGGACAATATGCAGCCAAGAATTTTTTGAAGTGTTATATTTACCAAACT
GTTATTCTCTTTGTTTAGGATATTTTGGATGACTTCAAACTATGGCTGAA
AACTTGCTACGGAAAGTCTAGTTCTGCTGCACAAGCCATCCGGAATTCAG
TGGAATTCATCTGGAAGACCATCGATCCCAGCCAGTCAACCGTCAAAATC
CAGCTCTTCGACGTGGATAAACTAGAAGACGACTTCTTCAACCCGAAGTT
GGCCATTGCAGTTGTAAGTCACcatatttttaatttaatcTACTTAGACT
GGGGCTCTTGCAAATTTGGAAATTCGGGATATACAGTAACCAAAAAATGA
TTCATCCTAACTTGTTTTAAGTTCTCTAGTCTGCCCCTCTTAatcttaaa
aatttataaatatatatTGCAATAGAATAAGGGATATATCAAAATCGAAT
GAAAAGCTGTCCATtgcattttcttttcatttctttcttttttcaggcAC
AATCTAAGAAACCAAAAGACGAGCAAAGTCCACACCTTACAGCGGGTACA
CTGTCAGGCAAATTGGACAGTCTAACATCTCTGTGTGCGTACAGCAGCTT
GAAACACGTATATGTCGGTATGTTGACGGATGAAAGGGAACTTCTTCTGA
TGAAGGTCAAGGAGTTTAAATATCGGTTGAAGAAACCTGTTCTTCAAAGA
TTCCGATTGATGAAGAGCTGGAAACATGCAACGCTGATAACGCCTAACGA
CCTTCATCAATGGGGACAGTCCTCTCATATCCAAGGGTTGATCAAATTCC
TATCAAAAATATCGTATACATCAAAACCAAAAATGGACAAAGTGACTATT
TCGCAAGTAAGGTTTTCTCTTTGAATAGTATTTActatcttttataagaa
tatcagggtgaaaattggcaaaatcgtaagaataccctaagaatgcCCTC
CAGGGTTTTCATAgattttgataagcaaaatagTCGTTTTCTACAACTGT
TTTTTTTCGTATGACTTAAATTACGTTTTTCCAATTAgtgatttcatttc
ttttttcgaGAAGCCATTGTTAAAGTAATTTTGTTATCTCTATTTCTTCA
GGCCTGTGACATTCGCAATTTCCTAATGATCAGCATAACAATAATCAATA
GCGCAAGGGCTTCCAATCTGATCAACATTTCCTTACAAGACATCACCAAA
GCAATCCCGACAACGCCCAACGATGGTTTCTGTGGGTTCGAATTTTCTTC
GTCCAAGTACAAAACGTGTTTAATCTACGGAGACAAAGTGATGTGGGTTA
ACCAGGAACTCTACGAATTCATCACTGGTTACATCACTTTCATCAGGCCC
TTGATCGCTCCCAAAGATTCAACATTGTTATTTACGAGTTCTTCAAAGAA
GTCAAAGATACGGGAAGAAGGAGATGAAGAGAAAGACCCGGGACAGATGG
AACACGCGATGATTTCGTCAGCATTCACAAGATCGTTCCAAAAAGCTGAT
GTATTTGGTTCCACGGACAACAACAACAGGGTTTCTCCGTCACGCCTCCG
CTGCGCCGCCTGCACGGAGCTTGTTGGTGTTGATGGCGAAAACAGCGACG
ATGTGGCCTTGCATTTCATAAAACACAGGTATAAATTCAGTTTCCGTTTG
CAATACTTGCCTCTGTCTGTTCTTTTTATCAACCATCTCTGTCCGAGAGA
ATATGTCTGATTTGGCAGGTTTAGATTTTTTAGTCAGTTTGTCATTCATG
CAACGTTTGCTTTTACAGACCATCCACATCGCGGAAGTATTATACCGCTT
ATTGGGAAAACAGAGAGGCACTTCGTATTTCAATGAAATGCTATTCTAAG
TTTCTTCCAAACGAAACGACGGCACGCATAGTGGCTGAACGAGATCGCAT
GCTCTCCAAACAAAAGCCACCGACGAGAAAAGACATGCAAacatggttta
caaaaatggcCAAGCTGTTGCAGAGCTCGACCGGGGAGAAGTTTACGGAC
GAAGGCCTTGTCCAATGCTTCAATGATTTGGACGACGACGACGTTCATTt
tgaCAAGTCTCCGGATGTTCCATCAACAGCACAAAGTTCCATCAAAGTAC
CAGGACCTTTTCATCGTGGCTTGAAAGGAACTTCTACTTCAACTTCTACT
CCAAAAAGAAAGGCACCAGAAACTGGTAAGGTACCTTTTGTATCAAATTA
CcattgaattttattatttataccTGGCATTGGTGTCCGAGAATCCACCC
AAAATGCACATCAATATATGTCTGACTggtctttcttttttaaagtgCTC
ATACTACATAAAAGGCTCTCATTAAACTTATTAATTCTTTTCTGCTCATT
CAGTACCTGCTAACCCTGACGAATTGACAAAAAACGCTAACATCAACGTT
CCAAGTTCATCGAAAAAGGCACCAGAAACTGGTAAGTTACCTATTGTATG
AAATTACCatgaaatttcattatttttacccGGCATAGGTGTCCGAGAAT
CCACCCAAAATACACATCAATCTATGTCTGACTGGTCTTTTTTTAAAGTG
CTCATACTACATAAAAGGCTCTCATTAAACTTATCTATTTTTTTCTTGCT
CATTCAGTACCTAAAAAACTCATACAATTTGTTTGCACCAATTATCAACT
GTTTTTGAAATCTATATAACTACCTTTTCAGATGTTAGTGAAGTTTACCC
ACTATTAGGTCTAAGATGGAATATGGTCTTAGGTAGAATAAGAAGGGgtt
ggatttttttcaaaagctaaTCGCCAGGGGTTGGATTAAAAATGTCCCGT
GTAGAAAAATTGACCGGAGGAAGTTTTGCAAATATTCTTTCGAAAATATA
ATCGACTACTTAGTCATTAAAGGACGAGATATTTAATGAGATgtcttttt
tattattaaacGCGAAAAAAAGAATATACAAAGCTATCTGCCTTATGAgc
agatttttgatttttgtttataCTCTCATTGCCAATCAGTTTgctgatat
ttttcaagttgacgataatATGAAATacttgaatttcattttttccttaT
GTTTAGAAGTCAGCAAATTTTGATGGTTTGTCG
Run BLAST on NCBI

protein sequence of TCONS_00072537-protein

>TCONS_00072537-protein ID=TCONS_00072537-protein|Name=TCONS_00072537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MISITIINSARASNLINISLQDITKAIPTTPNDGFCGFEFSSSKYKTCLI
YGDKVMWVNQELYEFITGYITFIRPLIAPKDSTLLFTSSSKKSKIREEGD
EEKDPGQMEHAMISSAFTRSFQKADVFGSTDNNNRVSPSRLRCAACTELV
GVDGENSDDVALHFIKHRYKFSFRLQYLPLSVLFINHLCPREYV
Run BLAST on NCBI

transcript from alignment at scaffold_8:34380..38961+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072537 ID=TCONS_00072537|Name=TCONS_00072537|organism=Clytia hemisphaerica|type=transcript|length=4582bp|location=Sequence derived from alignment at scaffold_8:34380..38961+ (Clytia hemisphaerica)
GGGTATTACTACTTGATTGACTTGGACTATCCTCAATTCTATTTCAGTAC TATTTCTTCGGCGATACAAGTGTACCAATCGAAATCACAAGAGTCTTGAC AGTTTCATGGGCAAATTTAGAAGTTTCAAATTAAAAAGACAGGGTTTGAA TTAATCTGATTGGAGAAAACTGATGTAGTCGGGTGGATAAATATTCCCCA CACTACATTTAAAGTAGAAAAGAGCTAATCAGGGAGGATCCAGACAACAG GTATCACAATCATCACAAAGATGTATGTTTGATTCTTGGTATCAGATTAT TTCGATCAAAGGAGACATGGCTTTTTCCACACAAGCAAAAAAGAAGATGA CATTCATTGAACTCATAGACCAAAGACCAATGACACGGGCAAATTGACGG GAGAAGGCTTCGCACGCTGTATTGCGGATGAGATTACTAACATAGAATAA AAGATGGCCAAGTTCGTGcgctttttgaaaaaagccgGAAAATAACAATT TCAGACGAAAACATTCCGAACTTAAAAGACTTGCATCATTACAGTTGAAG GTAAACCATGCGAAAAGTAAGGATTTTATCCTctaattataaaaatttat gCATTTAAAATTGCATTTATGTTTTTTACAACAACATATCCCTGAGATTG TAGGACAATATGCAGCCAAGAATTTTTTGAAGTGTTATATTTACCAAACT GTTATTCTCTTTGTTTAGGATATTTTGGATGACTTCAAACTATGGCTGAA AACTTGCTACGGAAAGTCTAGTTCTGCTGCACAAGCCATCCGGAATTCAG TGGAATTCATCTGGAAGACCATCGATCCCAGCCAGTCAACCGTCAAAATC CAGCTCTTCGACGTGGATAAACTAGAAGACGACTTCTTCAACCCGAAGTT GGCCATTGCAGTTGTAAGTCACcatatttttaatttaatcTACTTAGACT GGGGCTCTTGCAAATTTGGAAATTCGGGATATACAGTAACCAAAAAATGA TTCATCCTAACTTGTTTTAAGTTCTCTAGTCTGCCCCTCTTAatcttaaa aatttataaatatatatTGCAATAGAATAAGGGATATATCAAAATCGAAT GAAAAGCTGTCCATtgcattttcttttcatttctttcttttttcaggcAC AATCTAAGAAACCAAAAGACGAGCAAAGTCCACACCTTACAGCGGGTACA CTGTCAGGCAAATTGGACAGTCTAACATCTCTGTGTGCGTACAGCAGCTT GAAACACGTATATGTCGGTATGTTGACGGATGAAAGGGAACTTCTTCTGA TGAAGGTCAAGGAGTTTAAATATCGGTTGAAGAAACCTGTTCTTCAAAGG TAAATTGCAGttctttttatagttttttcagttattttatgTTCTTTTGC AGTTCTAGTCTTCCTGTCTCTCCGTTTAAATCTTGGAAAAAAGGCTTGTT CAAAGCAAGTTATCTTTTCAGAACCATTTTCGCAGTTTATTTAATGCTCG TCGAACCTTtgtttagattccaatttaTGAAGAGCTGGAAACATGCAACG CTGATAACGCCTAACGACCTTCATCAATGGGGAGAGTCCTCTCATATCCA AGGGTTGATCAAATTCCTATCAAAAATATCGTATACATCAAAACCAAAAA TGGACAAAGTGACTATTTCGCAAGTAAGGTTTTCTCTTTGAATAGTATTT Actatcttttataagaatatcagggtgaaaattggcaaagtcgtaagaat accctaagaatNGTGCGTACAGCAGCTTGAAACACGTATATGTCGGTATG TTGACGGATGAAAGGGAACTTCTTCTGATGAAGGTCAAGGAGTTCAAATA TCGGTTGAAGAAACCTGTTCTTCAAAGGTAAATTGCAGTTCTTTTATAAG TCTTCCTGTCTCTCCGTTTAAATCTTGGAAAAAAGGCTTGTTCAAAGCAA GTTATCTTTTCAGACCCATTTTTGGAGTTTATTTAATGCTCGTCGAACCT TTGTTTAGATTCCGATTGATGAAGAGCTGGAAACATGCAACGCTGATAAC GCCTAACGACCTTCATCAATGGGGACAGTCCTCTCATATCCAAGGGTTGA TCAAATTCCTATCAAAAATATCGTATACATCAAAACCAAAAATGGACAAA GTGACTATTTCGCAAGTAAGGTTTTCTCTTTGAATAGTATTTActatctt ttataagaatatcagggtgaaaattggcaaaatcgtaagaataccctaag aatgcCCTCCAGGGTTTTCATAgattttgataagcaaaatagTCGTTTTC TACAACTGTTTTTTTTCGTATGACTTAAATTACGTTTTTCCAATTAgtga tttcatttcttttttcgaGAAGCCATTGTTAAAGTAATTTTGTTATCTCT ATTTCTTCAGGCCTGTGACATTCGCAATTTCCTAATGATCAGCATAACAA TAATCAATAGCGCAAGGGCTTCCAATCTGATCAACATTTCCTTACAAGAC ATCACCAAAGCAATCCCGACAACGCCCAACGATGGTTTCTGTGGGTTCGA ATTTTCTTCGTCCAAGTACAAAACGTGTTTAATCTACGGAGACAAAGTGA TGTGGGTTAACCAGGAACTCTACGAATTCATCACTGGTTACATCACTTTC ATCAGGCCCTTGATCGCTCCCAAAGATTCAACATTGTTATTTACGAGTTC TTCAAAGAAGTCAAAGATACGGGAAGAAGGAGATGAAGAGAAAGACCCGG GACAGATGGAACACGCGATGATTTCGTCAGCATTCACAAGATCGTTCCAA AAAGCTGATGTATTTGGTTCCACGGACAACAACAACAGGGTTTCTCCGTC ACGCCTCCGCTGCGCCGCCTGCACGGAGCTTGTTGGTGTTGATGGCGAAA ACAGCGACGATGTGGCCTTGCATTTCATAAAACACAGGTATAAATTCAGT TTCCGTTTGCAATACTTGCCTCTGTCTGTTCTTTTTATCAACCATCTCTG TCCGAGAGAATATGTCTGATTTGGCAGGTTTAGATTTTTTAGTCAGTTTG TCATTCATGCAACGTTTGCTTTTACAGACCATCCACATCGCGGAAGTATT ATACCGCTTATTGGGAAAACAGAGAGGCACTTCGTATTTCAATGAAATGC TATTCTAAGTTTCTTCCAAACGAAACGACGGCACGCATAGTGGCTGAACG AGATCGCATGCTCTCCAAACAAAAGCCACCGACGAGAAAAGACATGCAAa catggtttacaaaaatggcCAAGCTGTTGCAGAGCTCGACCGGGGAGAAG TTTACGGACGAAGGCCTTGTCCAATGCTTCAATGATTTGGACGACGACGA CGTTCATTGTGAGTTTATGTTTAAACCCATTAAATTAATTAATATGAATT TACATGAACTGTTTTACATCTGGAACTGAACAAAATAATGTGTGCTAGTC TGAATTACAATTCGGGATATAGTACAGTCTGTGTTGATATCAATTTGTAA TTCTCTATTTAATGTGTAATTTGTGTCatgtttgtttcaaatttttagtt gaCAAGTCTCCGGATGTTCCATCAACAGCACAAAGTTCCATCAAAGTACC AGGACCTTTTCATCGTGGCTTGAAAGGAACTTCTACTTCAACTTCTACTC CAAAAAGAAAGGCACCAGAAACTGGTAAGGTACCTTTTGTATCAAATTAC cattgaattttattatttataccTGGCATTGGTGTCCGAGAATCCACCCA AAATGCACATCAATATATGTCTGACTggtctttcttttttaaagtgCTCA TACTACATAAAAGGCTCTCATTAAACTTATTAATTCTTTTCTGCTCATTC AGTACCTGCTAACCCTGACGAATTGACAAAAAACGCTAACATCAACGTTC CAAGTTCATCGAAAAAGGCACCAGAAACTGGTAAGTTACCTATTGTATGA AATTACCatgaaatttcattatttttacccGGCATAGGTGTCCGAGAATC CACCCAAAATACACATCAATCTATGTCTGACTGGTCTTTTTTTAAAGTGC TCATACTACATAAAAGGCTCTCATTAAACTTATCTATTTTTTTCTTGCTC ATTCAGTACCTAAAAAACTCATACAATTTGTTTGCACCAATTATCAACTG TTTTTGAAATCTATATAACTACCTTTTCAGATGTTAGTGAAGTTTACCCA CTATTAGGTCTAAGATGGAATATGGTCTTAGGTAGAATAAGAAGGGgttg gatttttttcaaaagctaaTCGCCAGGGGTTGGATTAAAAATGTCCCGTG TAGAAAAATTGACCGGAGGAAGTTTTGCAAATATTCTTTCGAAAATATAA TCGACTACTTAGTCATTAAAGGACGAGATATTTAATGAGATgtctttttt attattaaacGCGAAAAAAAGAATATACAAAGCTATCTGCCTTATGAgca gatttttgatttttgtttataCTCTCATTGCCAATCAGTTTgctgatatt tttcaagttgacgataatATGAAATacttgaatttcattttttccttaTG TTTAGAAGTCAGCAAATTTTGATGGTTTGTCG

Coding sequence (CDS) from alignment at scaffold_8:34380..38961+

>TCONS_00072537 ID=TCONS_00072537|Name=TCONS_00072537|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_8:34380..38961+ (Clytia hemisphaerica)
ATGATCAGCATAACAATAATCAATAGCGCAAGGGCTTCCAATCTGATCAA
CATTTCCTTACAAGACATCACCAAAGCAATCCCGACAACGCCCAACGATG
GTTTCTGTGGGTTCGAATTTTCTTCGTCCAAGTACAAAACGTGTTTAATC
TACGGAGACAAAGTGATGTGGGTTAACCAGGAACTCTACGAATTCATCAC
TGGTTACATCACTTTCATCAGGCCCTTGATCGCTCCCAAAGATTCAACAT
TGTTATTTACGAGTTCTTCAAAGAAGTCAAAGATACGGGAAGAAGGAGAT
GAAGAGAAAGACCCGGGACAGATGGAACACGCGATGATTTCGTCAGCATT
CACAAGATCGTTCCAAAAAGCTGATGTATTTGGTTCCACGGACAACAACA
ACAGGGTTTCTCCGTCACGCCTCCGCTGCGCCGCCTGCACGGAGCTTGTT
GGTGTTGATGGCGAAAACAGCGACGATGTGGCCTTGCATTTCATAAAACA
CAGGTATAAATTCAGTTTCCGTTTGCAATACTTGCCTCTGTCTGTTCTTT
TTATCAACCATCTCTGTCCGAGAGAATATGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045015XLOC_045015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072537-exon-scaffold_8-1491911889:34380..35728TCONS_00072537-exon-scaffold_8-1491911889:34380..35728Clytia hemisphaericaexon
TCONS_00072537-exon-scaffold_8-1510915933:34380..35728TCONS_00072537-exon-scaffold_8-1510915933:34380..35728Clytia hemisphaericaexon
TCONS_00072537-exon-scaffold_8-1575043694:34380..35728TCONS_00072537-exon-scaffold_8-1575043694:34380..35728Clytia hemisphaericaexon
TCONS_00072537-exon-scaffold_8-1491911889:36388..37737TCONS_00072537-exon-scaffold_8-1491911889:36388..37737Clytia hemisphaericaexon
TCONS_00072537-exon-scaffold_8-1510915933:36388..37737TCONS_00072537-exon-scaffold_8-1510915933:36388..37737Clytia hemisphaericaexon
TCONS_00072537-exon-scaffold_8-1575043694:36388..37737TCONS_00072537-exon-scaffold_8-1575043694:36388..37737Clytia hemisphaericaexon
TCONS_00072537-exon-scaffold_8-1491911889:37928..38961TCONS_00072537-exon-scaffold_8-1491911889:37928..38961Clytia hemisphaericaexon
TCONS_00072537-exon-scaffold_8-1510915933:37928..38961TCONS_00072537-exon-scaffold_8-1510915933:37928..38961Clytia hemisphaericaexon
TCONS_00072537-exon-scaffold_8-1575043694:37928..38961TCONS_00072537-exon-scaffold_8-1575043694:37928..38961Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072537-proteinTCONS_00072537-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:34380..38961 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0239346 0.082367 0.0675171 0.172799 0.0964352 0.172197 0.0821787 0.0868614 0.157227 0.541395 0.0820874 0 0 0 0 0 0.0096103 0 0 0.0255532 0.0208745 0 0 0.21394 0.337796 0.0138045 0 0.0223482 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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