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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072536 ID=TCONS_00072536|Name=TCONS_00072536|organism=Clytia hemisphaerica|type=transcript|length=2058bp
AAAGATCTCGGAATGACAGGTCGAGTTGTGGTAAGACTTATGCAGCCTCT
TCTTAACAAGGGACATCGTTTGTATACCGACAACTGGTACACAGGTGTGA
ATCTTTACAAATTCCTACAAGAAAATGACACCCCAGCCTGCGGGACTCTT
CGTAAAGACCGTGGTAAGTTCCCAGCAGATTTCAAAACAGGCAAACTAGA
AAAGGAACAGACCAGATGTGTGGTCGACGACAAACTATTGGCTATGCGGT
ATCAAGACTCGAATAATGTTTATTTCCTTTCGACCATGCATCGCCCTAAG
CTCGTGACCGTATCCAAGAAAGACCGTAACGGCGATGATGTAATGAAGCA
GGAGTTGGTGAATGATTATAACCAAAACAGCGACGATGTGGCCTTGCATT
TCATAAAACACAGGTATAAATTCAGTTTCCGTTTGCAATACTTGCCTCTG
TCTGTTCTTTTTATCAACCATCTCTGTCCGAGAGAATATGTCTGATTTGG
CAGGTTTAGATTTTTTAGTCAGTTTGTCATTCATGCAACGTTTGCTTTTA
CAGACCATCCACATCGCGGAAGTATTATACCGCTTATTGGGAAAACAGAG
AGGCACTTCGTATTTCAATGAAATGCTATTCTAAGTTTCTTCCAAACGAA
ACGACGGCACGCATAGTGGCTGAACGAGATCGCATGCTCTCCAAACAAAA
GCCACCGACGAGAAAAGACATGCAAacatggtttacaaaaatggcCAAGC
TGTTGCAGAGCTCGACCGGGGAGAAGTTTACGGACGAAGGCCTTGTCCAA
TGCTTCAATGATTTGGACGACGACGACGTTCATTGTGAGTTTATGTTTAA
ACCCATTAAATTAATTAATATGAATTTACATGAACTGTTTTACATCTGGA
ACTGAACAAAATAATGTGTGCTAGTCTGAATTACAATTCGGGATATAGTA
CAGTCTGTGTTGATATCAATTTGTAATTCTCTATTTAATGTGTAATTTGT
GTCatgtttgtttcaaatttttagttgaCAAGTCTCCGGATGTTCCATCA
ACAGCACAAAGTTCCATCAAAGTACCAGGACCTTTTCATCGTGGCTTGAA
AGGAACTTCTACTTCAACTTCTACTCCAAAAAGAAAGGCACCAGAAACTG
GTAAGGTACCTTTTGTATCAAATTACcattgaattttattatttataccT
GGCATTGGTGTCCGAGAATCCACCCAAAATGCACATCAATATATGTCTGA
CTggtctttcttttttaaagtgCTCATACTACATAAAAGGCTCTCATTAA
ACTTATTAATTCTTTTCTGCTCATTCAGTACCTGCTAACCCTGACGAATT
GACAAAAAACGCTAACATCAACGTTCCAAGTTCATCGAAAAAGGCACCAG
AAACTGGTAAGTTACCTATTGTATGAAATTACCatgaaatttcattattt
ttacccGGCATAGGTGTCCGAGAATCCACCCAAAATACACATCAATCTAT
GTCTGACTGGTCTTTTTTTAAAGTGCTCATACTACATAAAAGGCTCTCAT
TAAACTTATCTATTTTTTTCTTGCTCATTCAGTACCTAAAAAACTCATAC
AATTTGTTTGCACCAATTATCAACTGTTTTTGAAATCTATATAACTACCT
TTTCAGATGTTAGTGAAGTTTACCCACTATTAGGTCTAAGATGGAATATG
GTCTTAGGTAGAATAAGAAGGGgttggatttttttcaaaagctaaTCGCC
AGGGGTTGGATTAAAAATGTCCCGTGTAGAAAAATTGACCGGAGGAAGTT
TTGCAAATATTCTTTCGAAAATATAATCGACTACTTAGTCATTAAAGGAC
GAGATATTTAATGAGATgtcttttttattattaaacGCGAAAAAAAGAAT
ATACAAAGCTATCTGCCTTATGAgcagatttttgatttttgtttataCTC
TCATTGCCAATCAGTTTgctgatatttttcaagttgacgataatATGAAA
TacttgaatttcattttttccttaTGTTTAGAAGTCAGCAAATTTTGATG
GTTTGTCG Run BLAST on NCBI transcript from alignment at scaffold_8:31648..38961+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072536 ID=TCONS_00072536|Name=TCONS_00072536|organism=Clytia hemisphaerica|type=transcript|length=7314bp|location=Sequence derived from alignment at scaffold_8:31648..38961+ (Clytia hemisphaerica)
AAAGATCTCGGAATGACAGGTCGAGTTGTGGTAAGACTTATGCAGCCTCT
TCTTAACAAGGGACATCGTTTGTATACCGACAACTGGTACACAGGTGTGA
ATCTTTACAAATTCCTACAAGAAAATGACACCCCAGCCTGCGGGACTCTT
CGTAAAGACCGTGGTAAGTTCCCAGCAGATTTCAAAACAGGCAAACTAGA
AAAGGAACAGACCAGATGTGTGGTCGACGACAAACTATTGGCTATGCGGT
ATCAAGACTCGAATAATGTTTATTTCCTTTCGACCATGCATCGCCCTAAG
CTCGTGACCGTATCCAAGAAAGACCGTAACGGCGATGATGTAATGAAGCA
GGAGTTGGTGAATGATTATAACCAAAACATGGGGTTTGTCTATAATTGCG
ATTCAATAATAAATCAGCAAGGAATGGTCCGTAAAACACACAAATGGACA
ACCAAATGCGCTTTTCATCTCATTGACGAAGCGATTTATAACGCTTATGT
TTTACACGTGACCACATCTATTGAAAAACCATTTTCCTTCGTGGACTTCA
AAGTCACATTCATCAAAGAAATCTTTAGCGATATTCATCTTAAAGATCCA
TCTCAATCCCATACGCATTCTTTGGAAAATGTTCCAGTTCCGGAGACCAA
GAAAGCCAAATCACACCACAAGAGATGTAACCAATGCCACAAAAATAGCA
TCAGAAAGGAAACAAAGTATCAATGTCCTTTAAACCCTGGTTTTTGTGTG
GATCCTTGTTTTAAAGCTTTCCATTCCGCTATGCCAACGAACGCAAACAA
TTGAACTTTGATTGATTAACTTTgtgatatttgttttgatgagcTATTTT
Ttagatatctttttttgaaaagaaaaatctcttttgaaattaaaaataat
cttttcacttattttcatcaaaattctaCCCAGATGCttgaaagataaaa
attttgGAAAGGGATTTGGTATGTCCATGCCGGGATATGCCGAcatcggc
agttaaagggttaagaacAAACGTCGAAAATGTAGCGACACTGGTAAACA
AAGGAGAAAGGTACTCCGTGCCGTTAGAAAAAAAAGGTCTGATAAAAACC
AAGAGGATGAAGGAACAATCTATGAAAATGGTGGTTTTGGATTGTAATCA
TTTCATTGAATTACTCATTGTTACATGGACTATACAAGGGatattctttt
tctattttcaatttatttcaaGAATCTTTGACAtaaattttctccaaaaa
acgtgctttttgaaatttctgcggtaaataaaatttgatagcATTCTCCG
TTtgagctgaaattttcaggagactATCCTTTCATGGTTCTCCATGTTGC
CTATAAATTTCAATGAGTTCTGATGAAAGGGTGTTCCAGGCCAAATAATT
TTACTCGGCcaaattttatagaaaaagtTGACCGCTGACTTTGAAATGCC
ATAATTCAATAAAAACTCAAACAATCTAAATGAAATTTATAGGGAACATG
GAGTAACCTATAAAGGTATTCGCAAAGTTTGGATCGATTCCGGATAGTAT
TTCTTATTCCAGTTACCACAGAGTCAACCAAGTTAGAAATTTAATTAATT
ATGCACATAattaatataaaaatttttgtttgcacCAATTATCAACTGTC
TTTGAAATCTATATAACTACCTTTTCAGATGTTAGTGAAGTTTACCCACT
ATTAGGTCTAAGATGGAATATGGTCTTAGGTAGAATAAGAAGGGgttgga
tttttttcaaaagctaaTCGCCAGGGGTTGGATTAAAAATGTCCCGTGTA
GAAAAATTAAACGGAGGAAGTTTTGCAAACATTCTTTCGAAAATATAACC
GACTACTACGTCATTAAAGGACGAGATATTTAATGAGATgtcttttttat
tattaaacGCGAAAAAAAGAATATACAAAGCTATCTGCCTTAtgagcaaa
attgatttttgtttaTCCTCTCATTGCCAATCAGTTTgctgatatttttc
aagttgacgataatATGAAATAGTCCAGTAGAATTTTAGCATATTTGAGC
GATTTTGATGGTTTtctgctgagtcatcaaaatttgaaatgcaaatatct
caagatctaGCAATGGTACCTCAACAAACTATACCTGTattcgatagtac
tcttcgagacgcatccgttgaaagtggttttgagtgctgaaattaatttt
taaagtgttgacgtcagcattaaaaatgacaatttttcagccATTATGGC
TATTTTCTCAGGGTCTCgttgaccaaattttacaaatgaccccattttgg
acatCTACTCTTCCAGCTCTATCAGATGGAACCATCAAAATTAGctgttt
gaaaacttttaaaattgacatttttaattttgcttaGAAAACCCCCTCTC
ACTCTTTGgtccataactttttttccccatgacaaaaaaattgactctac
ccctcatttgaaagctgataaaattatctttccaacgatatatagaaacc
ttttataataattttttctaggttgacccTATTATGGACGAATTTCTACT
GGACTacttgaatttcattttttccttaTGTTTAGAAGTCTGCAAATTTT
GATGGTTTGTCGAAGAGAAATCAAATCATAATGATGCAAGACGACCAAtt
catcttcttcttcctcATGGAAACAAGACTGTGTCAAATGCCGCATTCAG
TAGATTTCATATATGCTTCCAAAGTCATGTTAGGGTATTACTACTTGATT
GACTTGGACTATCCTCAATTCTATTTCAGTACTATTTCTTCGGCGATACA
AGTGTACCAATCGAAATCACAAGAGTCTTGACAGTTTCATGGGCAAATTT
AGAAGTTTCAAATTAAAAAGACAGGGTTTGAATTAATCTGATTGGAGAAA
ACTGATGTAGTCGGGTGGATAAATATTCCCCACACTACATTTAAAGTAGA
AAAGAGCTAATCAGGGAGGATCCAGACAACAGGTATCACAATCATCACAA
AGATGTATGTTTGATTCTTGGTATCAGATTATTTCGATCAAAGGAGACAT
GGCTTTTTCCACACAAGCAAAAAAGAAGATGACATTCATTGAACTCATAG
ACCAAAGACCAATGACACGGGCAAATTGACGGGAGAAGGCTTCGCACGCT
GTATTGCGGATGAGATTACTAACATAGAATAAAAGATGGCCAAGTTCGTG
cgctttttgaaaaaagccgGAAAATAACAATTTCAGACGAAAACATTCCG
AACTTAAAAGACTTGCATCATTACAGTTGAAGGTAAACCATGCGAAAAGT
AAGGATTTTATCCTctaattataaaaatttatgCATTTAAAATTGCATTT
ATGTTTTTTACAACAACATATCCCTGAGATTGTAGGACAATATGCAGCCA
AGAATTTTTTGAAGTGTTATATTTACCAAACTGTTATTCTCTTTGTTTAG
GATATTTTGGATGACTTCAAACTATGGCTGAAAACTTGCTACGGAAAGTC
TAGTTCTGCTGCACAAGCCATCCGGAATTCAGTGGAATTCATCTGGAAGA
CCATCGATCCCAGCCAGTCAACCGTCAAAATCCAGCTCTTCGACGTGGAT
AAACTAGAAGACGACTTCTTCAACCCGAAGTTGGCCATTGCAGTTGTAAG
TCACcatatttttaatttaatcTACTTAGACTGGGGCTCTTGCAAATTTG
GAAATTCGGGATATACAGTAACCAAAAAATGATTCATCCTAACTTGTTTT
AAGTTCTCTAGTCTGCCCCTCTTAatcttaaaaatttataaatatatatT
GCAATAGAATAAGGGATATATCAAAATCGAATGAAAAGCTGTCCATtgca
ttttcttttcatttctttcttttttcaggcACAATCTAAGAAACCAAAAG
ACGAGCAAAGTCCACACCTTACAGCGGGTACACTGTCAGGCAAATTGGAC
AGTCTAACATCTCTGTGTGCGTACAGCAGCTTGAAACACGTATATGTCGG
TATGTTGACGGATGAAAGGGAACTTCTTCTGATGAAGGTCAAGGAGTTTA
AATATCGGTTGAAGAAACCTGTTCTTCAAAGGTAAATTGCAGttcttttt
atagttttttcagttattttatgTTCTTTTGCAGTTCTAGTCTTCCTGTC
TCTCCGTTTAAATCTTGGAAAAAAGGCTTGTTCAAAGCAAGTTATCTTTT
CAGAACCATTTTCGCAGTTTATTTAATGCTCGTCGAACCTTtgtttagat
tccaatttaTGAAGAGCTGGAAACATGCAACGCTGATAACGCCTAACGAC
CTTCATCAATGGGGAGAGTCCTCTCATATCCAAGGGTTGATCAAATTCCT
ATCAAAAATATCGTATACATCAAAACCAAAAATGGACAAAGTGACTATTT
CGCAAGTAAGGTTTTCTCTTTGAATAGTATTTActatcttttataagaat
atcagggtgaaaattggcaaagtcgtaagaataccctaagaatNGTGCGT
ACAGCAGCTTGAAACACGTATATGTCGGTATGTTGACGGATGAAAGGGAA
CTTCTTCTGATGAAGGTCAAGGAGTTCAAATATCGGTTGAAGAAACCTGT
TCTTCAAAGGTAAATTGCAGTTCTTTTATAAGTCTTCCTGTCTCTCCGTT
TAAATCTTGGAAAAAAGGCTTGTTCAAAGCAAGTTATCTTTTCAGACCCA
TTTTTGGAGTTTATTTAATGCTCGTCGAACCTTTGTTTAGATTCCGATTG
ATGAAGAGCTGGAAACATGCAACGCTGATAACGCCTAACGACCTTCATCA
ATGGGGACAGTCCTCTCATATCCAAGGGTTGATCAAATTCCTATCAAAAA
TATCGTATACATCAAAACCAAAAATGGACAAAGTGACTATTTCGCAAGTA
AGGTTTTCTCTTTGAATAGTATTTActatcttttataagaatatcagggt
gaaaattggcaaaatcgtaagaataccctaagaatgcCCTCCAGGGTTTT
CATAgattttgataagcaaaatagTCGTTTTCTACAACTGTTTTTTTTCG
TATGACTTAAATTACGTTTTTCCAATTAgtgatttcatttcttttttcga
GAAGCCATTGTTAAAGTAATTTTGTTATCTCTATTTCTTCAGGCCTGTGA
CATTCGCAATTTCCTAATGATCAGCATAACAATAATCAATAGCGCAAGGG
CTTCCAATCTGATCAACATTTCCTTACAAGACATCACCAAAGCAATCCCG
ACAACGCCCAACGATGGTTTCTGTGGGTTCGAATTTTCTTCGTCCAAGTA
CAAAACGTGTTTAATCTACGGAGACAAAGTGATGTGGGTTAACCAGGAAC
TCTACGAATTCATCACTGGTTACATCACTTTCATCAGGCCCTTGATCGCT
CCCAAAGATTCAACATTGTTATTTACGAGTTCTTCAAAGAAGTCAAAGAT
ACGGGAAGAAGGAGATGAAGAGAAAGACCCGGGACAGATGGAACACGCGA
TGATTTCGTCAGCATTCACAAGATCGTTCCAAAAAGCTGATGTATTTGGT
TCCACGGACAACAACAACAGGGTTTCTCCGTCACGCCTCCGCTGCGCCGC
CTGCACGGAGCTTGTTGGTGTTGATGGCGAAAACAGCGACGATGTGGCCT
TGCATTTCATAAAACACAGGTATAAATTCAGTTTCCGTTTGCAATACTTG
CCTCTGTCTGTTCTTTTTATCAACCATCTCTGTCCGAGAGAATATGTCTG
ATTTGGCAGGTTTAGATTTTTTAGTCAGTTTGTCATTCATGCAACGTTTG
CTTTTACAGACCATCCACATCGCGGAAGTATTATACCGCTTATTGGGAAA
ACAGAGAGGCACTTCGTATTTCAATGAAATGCTATTCTAAGTTTCTTCCA
AACGAAACGACGGCACGCATAGTGGCTGAACGAGATCGCATGCTCTCCAA
ACAAAAGCCACCGACGAGAAAAGACATGCAAacatggtttacaaaaatgg
cCAAGCTGTTGCAGAGCTCGACCGGGGAGAAGTTTACGGACGAAGGCCTT
GTCCAATGCTTCAATGATTTGGACGACGACGACGTTCATTGTGAGTTTAT
GTTTAAACCCATTAAATTAATTAATATGAATTTACATGAACTGTTTTACA
TCTGGAACTGAACAAAATAATGTGTGCTAGTCTGAATTACAATTCGGGAT
ATAGTACAGTCTGTGTTGATATCAATTTGTAATTCTCTATTTAATGTGTA
ATTTGTGTCatgtttgtttcaaatttttagttgaCAAGTCTCCGGATGTT
CCATCAACAGCACAAAGTTCCATCAAAGTACCAGGACCTTTTCATCGTGG
CTTGAAAGGAACTTCTACTTCAACTTCTACTCCAAAAAGAAAGGCACCAG
AAACTGGTAAGGTACCTTTTGTATCAAATTACcattgaattttattattt
ataccTGGCATTGGTGTCCGAGAATCCACCCAAAATGCACATCAATATAT
GTCTGACTggtctttcttttttaaagtgCTCATACTACATAAAAGGCTCT
CATTAAACTTATTAATTCTTTTCTGCTCATTCAGTACCTGCTAACCCTGA
CGAATTGACAAAAAACGCTAACATCAACGTTCCAAGTTCATCGAAAAAGG
CACCAGAAACTGGTAAGTTACCTATTGTATGAAATTACCatgaaatttca
ttatttttacccGGCATAGGTGTCCGAGAATCCACCCAAAATACACATCA
ATCTATGTCTGACTGGTCTTTTTTTAAAGTGCTCATACTACATAAAAGGC
TCTCATTAAACTTATCTATTTTTTTCTTGCTCATTCAGTACCTAAAAAAC
TCATACAATTTGTTTGCACCAATTATCAACTGTTTTTGAAATCTATATAA
CTACCTTTTCAGATGTTAGTGAAGTTTACCCACTATTAGGTCTAAGATGG
AATATGGTCTTAGGTAGAATAAGAAGGGgttggatttttttcaaaagcta
aTCGCCAGGGGTTGGATTAAAAATGTCCCGTGTAGAAAAATTGACCGGAG
GAAGTTTTGCAAATATTCTTTCGAAAATATAATCGACTACTTAGTCATTA
AAGGACGAGATATTTAATGAGATgtcttttttattattaaacGCGAAAAA
AAGAATATACAAAGCTATCTGCCTTATGAgcagatttttgatttttgttt
ataCTCTCATTGCCAATCAGTTTgctgatatttttcaagttgacgataat
ATGAAATacttgaatttcattttttccttaTGTTTAGAAGTCAGCAAATT
TTGATGGTTTGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072536-exon-scaffold_8-1491911889:31648..32025 | TCONS_00072536-exon-scaffold_8-1491911889:31648..32025 | Clytia hemisphaerica | exon |
| TCONS_00072536-exon-scaffold_8-1510915933:31648..32025 | TCONS_00072536-exon-scaffold_8-1510915933:31648..32025 | Clytia hemisphaerica | exon |
| TCONS_00072536-exon-scaffold_8-1575043694:31648..32025 | TCONS_00072536-exon-scaffold_8-1575043694:31648..32025 | Clytia hemisphaerica | exon |
| TCONS_00072536-exon-scaffold_8-1491911889:37282..38961 | TCONS_00072536-exon-scaffold_8-1491911889:37282..38961 | Clytia hemisphaerica | exon |
| TCONS_00072536-exon-scaffold_8-1510915933:37282..38961 | TCONS_00072536-exon-scaffold_8-1510915933:37282..38961 | Clytia hemisphaerica | exon |
| TCONS_00072536-exon-scaffold_8-1575043694:37282..38961 | TCONS_00072536-exon-scaffold_8-1575043694:37282..38961 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:31648..38961 + |
Blast
The following BLAST results are available for this feature:
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