TCONS_00072535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072535
Unique NameTCONS_00072535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072535 ID=TCONS_00072535|Name=TCONS_00072535|organism=Clytia hemisphaerica|type=transcript|length=293bp
CTTGTGTTCTTTCTAATCTTACACTCAGTTGTGTTTCCTGAAGAGTCAGT
GCGGTTCTTTTTACACTCAGACTTACTTTATAACCTCATCACCCGTTTGT
GAGGACAATTGAtgcatttttgacatttttgataCTTATATTTTGTTCCA
ATCTTTCAGTttctttataaaatatttttatttttatttttcgattttta
aaactgTACATATTTTTAGTTTACTTTAACGAAAAAAGCAActacatttt
tacatttttaagaAAGGAGGTTCCTTTTTTTAGGGACGATTGT
Run BLAST on NCBI

transcript from alignment at scaffold_79:56665..56957

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072535 ID=TCONS_00072535|Name=TCONS_00072535|organism=Clytia hemisphaerica|type=transcript|length=293bp|location=Sequence derived from alignment at scaffold_79:56665..56957 (Clytia hemisphaerica)
ACAATCGTCCCTAAAAAAAGGAACCTCCTTtcttaaaaatgtaaaaatgt
agTTGCTTTTTTCGTTAAAGTAAACTAAAAATATGTAcagttttaaaaat
cgaaaaataaaaataaaaatattttataaagaaACTGAAAGATTGGAACA
AAATATAAGtatcaaaaatgtcaaaaatgcaTCAATTGTCCTCACAAACG
GGTGATGAGGTTATAAAGTAAGTCTGAGTGTAAAAAGAACCGCACTGACT
CTTCAGGAAACACAACTGAGTGTAAGATTAGAAAGAACACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045014XLOC_045014Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072535-exon-scaffold_79-1491911889:56665..56957TCONS_00072535-exon-scaffold_79-1491911889:56665..56957Clytia hemisphaericaexon
TCONS_00072535-exon-scaffold_79-1510915933:56665..56957TCONS_00072535-exon-scaffold_79-1510915933:56665..56957Clytia hemisphaericaexon
TCONS_00072535-exon-scaffold_79-1575043694:56665..56957TCONS_00072535-exon-scaffold_79-1575043694:56665..56957Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_79supercontigscaffold_79:56665..56957 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.97518	1.79499	1.62419	1.52054	2.48399	2.19773	2.55981	1.40226	0.560126	2.61763	0.239117	0	0	1.29606	0	0.468426	2.03574	1.78733	1.44849	0.438962	0.452121	0.403507	0.577417	0	0.467393	1.4286
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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