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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072528 ID=TCONS_00072528|Name=TCONS_00072528|organism=Clytia hemisphaerica|type=transcript|length=2608bpRun BLAST on NCBI protein sequence of TCONS_00072528-protein >TCONS_00072528-protein ID=TCONS_00072528-protein|Name=TCONS_00072528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=660bp MNIFALSRNAFKNTIYTSIIKQTSFSTRTTFSSLANQNQCRLCGSKLNTGRun BLAST on NCBI transcript from alignment at scaffold_79:29355..56319- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072528 ID=TCONS_00072528|Name=TCONS_00072528|organism=Clytia hemisphaerica|type=transcript|length=26965bp|location=Sequence derived from alignment at scaffold_79:29355..56319- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_79:29355..56319- >TCONS_00072528 ID=TCONS_00072528|Name=TCONS_00072528|organism=Clytia hemisphaerica|type=CDS|length=23796bp|location=Sequence derived from alignment at scaffold_79:29355..56319- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072528 vs. Swiss-Prot (Human)
Match: ABCBA (ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2) HSP 1 Score: 624.394 bits (1609), Expect = 0.000e+0 Identity = 311/579 (53.71%), Postives = 433/579 (74.78%), Query Frame = 3
Query: 249 RLLSLAHPERWRIGGAVGLLLFSSAVSMSVPFFIGKLMDIIFSDPQSNEEMLKRLKEMCFLLGFVFAAGAVANTGRIYMMQTSGQRIVQRLRSNAFRSVISQEVAFFDKEKSGELINRLATDTSLVSRAITDNISDGLRATSQAIGGVSLMVYTSPKLAGISLVVVPPIVLFAVLYGRYVRKITKNVQDKLAESSSVAEEKFANIRTVRAFGQESKEMNLYNAVVTDIYDLARKEAIARSLFYGYNGFTGNMIAMMVLYSGGCMMIDSQITVGDLTSFMLYTVYVGVSIAGLGSFYTELMRGLGASSRLWQLVDKKPTIPLTGGSDILRVIADNSIDFKTIDFYYPSRPDVQILDEFNMKVKSGDICAIVGESGSGKTTIGSLLLRYYDVNKGGIDVGGHDIRSFDPTSLRQYIGTVSQEPALFSMTIGENISYGA--THDVXXXXXXXXXXXXNAYKFISDFPDGFDTLVGERGQMLSGGXXXXXXXXXXXXKNPKILLLDEATSALDAESEHLVQDALQKLMHGRTTIIIAHRLSTIKSANQIAVLQKGRIAEIGSYYDLLTKEDGLFKQLVDRQNF 1979
+LL LA+PER R+ AVG L SS +SMS PFF+GK++D+I+++P + L +C L VF GA AN R+Y+MQTSGQRIV RLR++ F S++ QEVAFFDK ++GELINRL++DT+L+ R++T+N+SDGLRA +QA G+S+M + SP LA L VVPP+ + AV+YGRY+RK+TK QD LA+++ +AEE+ N+RTVRAFG+E E+ Y + V + LARKEA AR+ F+G G +GN+I + VLY GG +M + +TVG+L+SF++Y +VG+SI GL SFY+ELM+GLGA RLW+L++++P +P G + +++FK + F YP+RP+V I +F++ + SG + A+VG SGSGK+T+ SLLLR YD G I + GHDIR +P LR IGTVSQEP LFS +I ENI+YGA VT ++I A+ ANA FI +FP GF+T+VGE+G +LSGGQ+QRIAIARA++KNPKILLLDEATSALDAE+E+LVQ+AL +LM GRT ++IAHRLSTIK+AN +AVL +G+I E G + +LL+K +G++++L+++Q+F
Sbjct: 159 KLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYS--DNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSF 735 The following BLAST results are available for this feature:
BLAST of TCONS_00072528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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