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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072526 ID=TCONS_00072526|Name=TCONS_00072526|organism=Clytia hemisphaerica|type=transcript|length=2419bp
aaaattaaaaacatcagaACCTGCTCGAAACGTGGTTTCCAAAATAAATG
ACGTGAAAACCGTCCCAAATGAGAAGATGAAAGAAAAATTGGTTCCGTTT
GATTTCGATGACCAAgattgtgacgtcatcattgaAGTCAAAGACAAAGA
AGTCTATTTACCATTTACTTTCTTGAAAATGGCttcgaaagaaaatgttt
tacgGCCGTTTACTGGTGGGAGATTGTACCTTGATGTGTCTTCAAAAAGT
TTGGTTGAAGCATTGTCTTTTTACGTCCCAAAAATAAGCAAGGGTGATAC
CGTTGATTAACAACGATGTATTTCTGAAAGTTGGCTAAAACACTTCGGTC
TTATCGCTAATCACGATTTTCTAGTCTTGAGCAACGACATGCGATATGAA
CTTTTAAAGAACACAGTTATACGTCAATTGGTGACTTATGCCAAACATGT
TTACGAGAGAAAGTTTTTCCGTGAAACTGTAGTTGGAATGGAGATTCAAA
TGATTTTCAACTTTCTTGATTTGGAAGTATACGAAAATCGGATGGTTGAC
CTTGCACCTaagaaaaaccctatttttatgccgaaaaacaattatttgac
TTCTTTGGAAAAGTTTGTTGATTTGGAGTCGATATCATGCAATAAAGAGT
CTGCTGATTGCGTCACGCTAGTCGTTGAAGAGAGAGAAATTCACGTCAAT
TCTTTCCTCTTAACCAACAATTCTCCTGTTTTCAAAGCAATGTTGAGCTC
AAATTCATTCAAAGAAGGTCAGAGCAAAAGGATTGAGTTACCAGGCAAGA
ATTTCAACCAAATCATTTATCTTCTGCAGCATTTATATTCGTCGAAACAT
ATCGGAAATATTCATCGTGTTCGTGATCTATCACTGCTTTGCCGGGAGTA
CCAAATCGATTGGTTgactgaaaaaatcaaaacttttatcATCGAAGAAG
GGTCAAAGAATACGGCTGACGAAATCCTTCAATATCTCACACTTTCAGAG
GAAGCGAACTTTGGACTTCCATTGTACGAAACTTTGGTGAATCAGTTACA
TGACTCGTTTCAAACCATTCAACtgtgtccaaatttcatgtcttTGAGTC
GTACTATGCAAATCGTGATCGCTCGAAAACGTTTATGGTTCttacttgaa
aattttggctcTTCCCTGAAGAACCTCTGCCTGAACAGAGTGGCTTATGG
CTTCCTCTCTATTTTCAAAGAACAACCGGTCTTCAACTTTGAGTACAATG
AGATAGAACAATCTTACTTAAGGCGATGTCATAAAGATggaaaatcaaat
gaaaatagTTAATCAAAACCAAAATATTCAGTTTGATGCTGAGTTCAAAA
TTAACTGCCGATCGGGTTTAATCGACTATGTATTTATGGATTTATGATAC
CCTTTTATTTCTTAACATCTATTCGTCTAGGTTTTTAAGAGCAGTTTTTG
ATGCCACTCCACGACTCAATTCAGGAGGGTGTATTTGAAAAGTTGTGGAA
AACTTCTCAGAGACTTTGAAACAATATATGgtcattttgttgttgttttt
tggacctaccccggtgggaaGTAATATTTCCTAATATTATCATAAAATGA
ATGAGACATTTTCTTGATCGCtccaaattttatatttttaagagcTAATC
GTTTGCGGTAGAGGGGACCAATTTTAATGACTCGGTTAGCTACCCTTAGC
GTAATATTTACATTTCTCTCTATACCTTAACAGCCCTTTTTACGTTGGTC
CTAATTTAGCATCGGCCATTGTTACGCCAAAGATGAATTTTACAATTTAA
TTCCGACTCCTTACGCCAGCGACGAAAAAACTACGCCGATAAGGGTCTTA
CGCAAgcgtaataagggccgataaggtatgaaTTTGAACTTTCGCTATAG
GACAAACGTGAGAGGGACGAACTTTTTCCAATGTTGTCGAggaatttttt
ctgaaagcggCAAAGAAAGAGACTTGGTTCTAATATAATGTTTTTGGTGA
AAGGTTTTACTTTTGCTAATCACCGCAAATTTTCAATATGTCGATGACAT
ATGAAAGAAGCAGTTCCCTTGGAAACGTGAAAAATAGCCGACTTGAAATT
TCCATGCCAATCGAACCATGGagtaaaaagaagaaataatttGATTGGGA
ATGACCTATTTTATAGCGAAGTAGTTAACGATAAAGATATTGAAAAAAGT
CCTTCTCGCTATTCCGATTAACCTACTGACTGAATAAATGCGAGAATTAA
TCTTGATAACAAATCTCGAGAATAAAAAGAATGAATTCGATACGGAGTCT
TCTGAATTTAAAAGAAGCTCGAAAACGTTAGTCAATGAATTGAATAATGC
TCTGTTCGTTTGATATCCTGGTTGAGATTGGTATGGCGATCGGATTAAGC
TTGTACAAGGCCTTGTTAT Run BLAST on NCBI transcript from alignment at scaffold_79:18778..26142- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072526 ID=TCONS_00072526|Name=TCONS_00072526|organism=Clytia hemisphaerica|type=transcript|length=7365bp|location=Sequence derived from alignment at scaffold_79:18778..26142- (Clytia hemisphaerica)
AAAATTAAAAACATCAGAACCTGCTCGAAACGTGGTTTCCAAAATAAATG
ACGTGAAAACCGTCCCAAATGAGAAGATGAAAGAAAAATTGGTTCCGTTT
GATTTCGATGACCAAGATTGTGACGTCATCATTGAAGTCAAAGACAAAGA
AGTCTATTTACCATTTACTTTCTTGAAAATGGCTTCGAAAGAAAATGTTT
TACGGCCGTTTACTGGTGGGAGATTGTACCTTGATGTGTCTTCAAAAAGT
TTGGTTGAAGCATTGTCTTTTTACGTCCCAAAAATAAGCAAGGGTGATAC
CGTTGATTGTAAGTGACTTTATCTTGGCAATTTTCGTTTCTATGAAAGAC
GGAGGGCATTTGATCGTGGGTGTATGATGATAAAATTTTGTAAACATGTG
ACTCATAAAATTTTATTAAAAGTCAAAAAGTTTCGGAGTGTCAAAAGAAA
TTTTCTGTGAGCTATTAGCAAAAAAGCGCAGGGTGGTGGAAAACAACCCC
CTGATAAATACGGTTAAAGCTTCACTTTTTCTTGCTTGACAAAGGTTGAA
GATTCCACTCTAACTCCTTCGGGGCTTCAAACTCAAACTTCAAGCAGCTT
TTAGTCCGGGAGCCAAACCCAAAAAATGGCATTTTGCTTAACCCAAGATT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTCCTAGTTTTGGAAATGGTCGGTCCCCAAAGCTAACTCCTGG
TCAATTTTTCATACTGGGCCCGAGTTTAGGGGGTACTTTTTACCCTTTGT
AAGGACTTGTTAAGGAAAATGCCATTCCAGGGACGATATAATTTACTGTA
TCTAGTCAATCGGTTGACCAATTGCTTTGAAACTTTGCAAAAAGTTTCAA
GGTAGGCTGATGATTATTTTCGCAAAAGAATTTTTGTGAAAAATTATTTT
TATAGGTTTGCCTGGGGAAAAAAGGGGGAAATTTGGGTATTTTAACTAAA
CTTTGACCCTTTTTAAGTCTGGGACCTACCCAAACAACTTTTAATGAGGC
ACAAACCTAGGTGTTATGACAGACTTTGATGCAATACATCAGAAAAATTT
CAAACAGACAGTATTTAGTATTATTTCAGGGCTGCAGGGGGTAAAATTGC
CCATTTTTATGGGTTTTTACCTTATTTGAGCAATTTTCACCACTAATCTT
GGTTAAAAAATCATCAAAAAAAGTTTTAACTTGATTTTCGTGTAATATAT
CCTGAAAGATTACAATGCTGACTTAAAACTAACGAAACCAGGGTGCAAAT
GGACAAACCAGGGGGTAAAAATGCCCATTTTAGGCGATTTTATCGTTTTT
GGACCTATTTCACCCATAAAGCGGTTTTATGGTGTACCAATTTTATTTCT
GACCACTGAAACAAGGATCATTTTGTAGTAGGAGCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TAACAATGACACAGCACTTTTATTTCTACCCAAGTTAACAATATTTTACA
AATTATTAGGCTCCAAATAACTATTCTACTTAAAAACCAGTACAGGGATC
ATTTTTTTGTGTAGGTTGTCAACAAAAGTACTAAGAAATGACTGAAGGGT
ATATAACTGGTTTCCATCTCAAAATTTCATGAATTTGAGGCTACCATACA
ATAAAAACATCCAAATTCAGGCAACAACTACCAAGAAGTGGTGTATTTAC
CCCCTGATTTGCCAACAGTGACCCTGATTACAGACAATGAAAACCACAAA
TAACTTTCCCATTGCTCCTACTACAAAATGATCCTTGTTTCAGTGGTCAG
AAATAAAATTGGTACACCATAAAACCGCTTTATGCCCTTTATGGGTGAAA
TAGGTCCAAAAACGATAAAAATCACCTAAAATGGGCATTTTTACCCCCTG
GTTTGTCCATTTGCACCCTGGTTTTGTTAGTTTAAGTCAGCATTGTAATC
TTTCAGGATATATTACACGAAAATCAAGTTAAAACTATTTTTGATGACGT
TTTAACCAAGATTAGTGGTGAAAATTGCTCAAATAAGGTAAAAACCCATA
AAAATGGGCAATTTTACCCCCTGCAGCCCTGAAATAATACTAAATACTGT
CTGCTTGAAATTTTTCTGATGTATTGCATCAAAGTCTATCATAACACCTA
GTTTGTGCCTCATTAAAAGTTGTTTGGGTAGGTCCCAGACTTAAAAAGGG
TCAAAATTTAGTTGAAATACCCAAATTTCCCCCTTTTTCCCCCAGACAAA
CCCATAAGAATAATTTTTCACAAAAATTTTTTGCCGAAAATAATCATCAG
CCTACCTTGAAACTTTTTGCAAAGTTTCAAAGCAATTGTTGGTCAACTGA
TTGACTAGATACAGCAAATTATATCATTCCTGGAATGGCATTTTCCTTAA
CAAATACTTACAAAGGGTAAAAAGTACCCCCTAAACTCGGGCCCAGTATA
AAAAATTGACCAGGAGTTAGCTTTGGGGACCGACCATTTCCAAAACTAGG
ATAGTTGAGGATTCCAAAAATGTATAGTTTATCCTGTAGAATCTTGGGTT
AAGCAAAAGTGCTTATTTAAGGAGATATAGGATTTGGCTCCCGGACTATT
TCAGAACTATTCTCGAAAAAAGCTTTGTAGATTTTTGAAAATTGCAGGTA
AGTTAGAGCAAGGAATTCCTCTTTTTCTAAAATATTATGATCCTGAATGA
AAGACTTTTTTAGATATTATTTCAATTGTTTTTACTGGGCCAAAAATTTG
ATGCAGGAGAAGGATACTAAGAGGGTCTTCTTTCTAACGACATAAGTAAG
TTTTGTAGATAGTACAAATTTTCGGGGGGGGGGTTCCTAGGAAAAAAGTT
ACCACAGAGTATTTACTCACTGGGAAACAAGTACTGCGGGTGTACTTTTT
TCCGGGGAATACNTGGGGGGGGGGGGGGTTCCTAGGAAAAAAGTTACCAC
AGAGTATTTACATTTACTCACTGGGAAACAAGTACTGCGGCTGTACTTTT
TTCCGGGGAATACTTAATTTTTGTTGACTGGGGGCCAATTATGACTTTTT
GATAGACTTGACGGCGATGATAAATGTAATATAGCTTCGACAACTTCGAC
ACTGGATCCAGTTAAATTGAAAACTTTTTTTTCCGGCCAACTTTCCACAC
ATCATGAGCTAAACAACTAATCTCAAACTATTTGATATTTCAGTTACAAA
TCTTGAGGAGGCTGTCAGGGTGGCTAAATTTCTAAATTTAAAAAGACTTC
AAGATTACATTGAAAAGGTCTGCTTGAGAAAAGCTTTTTACCATCCACGA
GTTCTTGACGAAAAAGGCATTAACGCTTTGAGAATCGCTCAAACCTACGA
CATGTTTTTGTTCTTAGAACAACGATGTATTTCTGAAAGTTGGCTAAAAC
ACTTCGGTCTTATCGCTAATCACGATTTTCTAGTCTTGAGCAACGACATG
CGATATGAACTTTTAAAGAACACAGTTATACGTCAATTGGTGACTTATGC
CAAACATGTTTACGAGAGAAAGTTTTTCCGTGAAACTGTAGTTGGAATGG
AGATTCAAATGATTTTCAACTTTCTTGATTTGGAAGTATACGAAAATCGG
ATGGTTGACCTTGCACCTAAGAAAAACCCTATTTTTATGCCGAAAAACAA
TTATTTGACTTCTTTGGAAAAGTTTGTTGATTTGGAGTCGATATCATGCA
ATAAAGAGTCTGCTGATTGCGTCACGCTAGTCGTTGAAGAGAGAGAAATT
CACGTCAATTCTTTCCTCTTAACCAACAATTCTCCTGTTTTCAAAGCAAT
GTTGAGCTCAAATTCATTCAAAGAAGGTCAGAGCAAAAGGATTGAGTTAC
CAGGCAAGAATTTCAACCAAATCATTTATCTTCTACAGCATTTATATTCG
TCGAAACATATTGGAAATATTTATCGTAAGTATTTTCAAATCTAATGGGA
TAACAATTATTTCATTGAGCCGACACCATTCCTTTTCATCGTTCGATAAG
AAAGTGGTTATATGTACACACTTTTTTTATAAGAATTGTGTATTTTGGAT
GAGGGTCAAGTATTCTTAAGNCTTGACGAAAAAGGCATTAACGCTTTGAG
AATCGCTCAAACCTACGACATGTTTTTGTTCTTAGAACAACGATGTATTT
CTGAAAGTTGGCTAAAACACTTCGGTCTTATCGCTAATCACGATTTTCTA
GTCTTGAGCAACGACATGCGATATGAACTTTTAAAGAACACAGTTATACG
TCAATTGGTGACTTATGCCAAACATGTTTACGAGAGAAAGTTTTTCCGTG
AAACTGTAGTTGGAATGGAGATTCAAATGATTTTCAACTTTCTTGATTTG
GAAGTATACGAAAATCGGATGGTTGACCTTGCACCTAAGAAAAACCCTAT
TTTTATGCCGAAAAACAATTATTTGACTTCTTTGGAAAAGTTTGTTGATT
TGGAGTCGATATCATGCAATAAAGAGTCTGCTGATTGCGTCACGCTAGTC
GTTGAAGAGAGAGAAATTCACGTCAATTCTTTCCTCTTAACCAACAATTC
TCCTGTTTTCAAAGCAATGTTGAGCTCAAATTCATTCAAAGAAGGTCAGA
GCAAAAGGATTGAGTTACCAGGCAAGAATTTCAACCAAATCATTTATCTT
CTGCAGCATTTATATTCGTCGAAACATATCGGAAATATTCATCGTAAGTA
TTTTCAAATCTAATGGGATAACAATGATTTCATTGAGCCGACACCATTCC
TTTTCATCGTTCGATAAGAAAGTGGTTATATGTACAAACTTTTTTAATAA
GAATAGTGTACTTTGGATGAGGGTGAAGTATTCTTAAAAAGAAACTGCCA
AAATTGAAAGTGAAATATTCTTAACGTATCCTTACTTTTTTAGACTTGAC
TTTTATACAAACATGAGAAATGATCAATTTCAGAGTTTGTGGCTTTTGAG
TGCACATTTGGAACAAAAATTATATTTCTGCCTCAAATTTTTAGTTTAAG
TATAAAACAAAAGAAAGCAGATTTTTTTGTTAACCAAATACAAAATGGCC
GTTTTCTTATCAAATTCTGTGAAACTCACCCTAGAGGGTATTCTTAGGGT
ATTCTTACGATTTGGCCAATTTTCACCCTGATATTCTTATAGAAGATATT
CTGAAATAAAAAGCGTCTTTTAAGAAGAGGGGGAGGAGGGTTTTCTTTAA
ATTGAAACCAAAATTTATTTTTTTGCTAAACGAAATCTAATCATTATATG
TTTCTTTTGAAGGTGTTCGTGATCTATCACTGCTTTGCCGGGAGTACCAA
ATCGATTGGTTGACTGAAAAAATCAAAACTTTTATCATCGAAGAAGGGTC
AAAGAATACGGCTGACGAAATCCTTCAATATCTCACACTTTCAGAGGAAG
CGAACTTTGGACTTCCATTGTACGAAACTTTGGTGAATCAGTTACATGAC
TCGTTTCAAACCATTCAACTGTGTCCAAATTTCATGTCTTTGAGTCGTAC
TATGCAAATCGTGATCGCTCGAAAACGTTTATGGTTCTTACTTGAAAATT
TTGGCTCTTCCCTGAAGAACCTCTGCCTGAACAGAGTGGCTTATGGCTTC
CTCTCTATTTTCAAAGAACAACCGGTCTTCAACTTTGAGTACAATGAGAT
AGAACAATCTTACTTAAGGCGATGTCATAAAGATGGAAAATCAAATGAAA
ATAGTTAATCAAAACCAAAATATTCAGTTTGATGCTGAGTTCAAAATTAA
CTGCCGATCGGGTTTAATCGACTATGTATTTATGGATTTATGATACCCTT
TTATTTCTTAACATCTATTCGTCTAGGTTTTTAAGAGCAGTTTTTGATGC
CACTCCACGACTCAATTCAGGAGGGTGTATTTGAAAAGTTGTGGAAAACT
TCTCAGAGACTTTGAAACAATATATGGTCATTTTGTTGTTGTTTTTTGGA
CCTACCCCGGTGGGAAGTAATATTTCCTAATATTATCATAAAATGAATGA
GACATTTTCTTGATCGCTCCAAATTTTATATTTTTAAGAGCTAATCGTTT
GCGGTAGAGGGGACCAATTTTAATGACTCGGTTAGCTACCCTTAGCGTAA
TATTTACATTTCTCTCTATACCTTAACAGCCCTTTTTACGTTGGTCCTAA
TTTAGCATCGGCCATTGTTACGCCAAAGATGAATTTTACAATTTAATTCC
GACTCCTTACGCCAGCGACGAAAAAACTACGCCGATAAGGGTCTTACGCA
AGCGTAATAAGGGCCGATAAGGTATGAATTTGAACTTTCGCTATAGGACA
AACGTGAGAGGGACGAACTTTTTCCAATGTTGTCGAGGAATTTTTTCTGA
AAGCGGCAAAGAAAGAGACTTGGTTCTAATATAATGTTTTTGGTGAAAGG
TTTTACTTTTGCTAATCACCGCAAATTTTCAATATGTCGATGACATATGA
AAGAAGCAGTTCCCTTGGAAACGTGAAAAATAGCCGACTTGAAATTTCCA
TGCCAATCGAACCATGGAGTAAAAAGAAGAAATAATTTGATTGGGAATGA
CCTATTTTATAGCGAAGTAGTTAACGATAAAGATATTGAAAAAAGTCCTT
CTCGCTATTCCGATTAACCTACTGACTGAATAAATGCGAGAATTAATCTT
GATAACAAATCTCGAGAATAAAAAGAATGAATTCGATACGGAGTCTTCTG
AATTTAAAAGAAGCTCGAAAACGTTAGTCAATGAATTGAATAATGCTCTG
TTCGTTTGATATCCTGGTTGAGATTGGTATGGCGATCGGATTAAGCTTGT
ACAAGGCCTTGTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072526-exon-scaffold_79-1575043694:25835..26142 | TCONS_00072526-exon-scaffold_79-1575043694:25835..26142 | Clytia hemisphaerica | exon |
| TCONS_00072526-exon-scaffold_79-1575043694:20900..21457 | TCONS_00072526-exon-scaffold_79-1575043694:20900..21457 | Clytia hemisphaerica | exon |
| TCONS_00072526-exon-scaffold_79-1575043694:18778..20330 | TCONS_00072526-exon-scaffold_79-1575043694:18778..20330 | Clytia hemisphaerica | exon |
| TCONS_00072526-exon-scaffold_79-1510915933:25835..26142 | TCONS_00072526-exon-scaffold_79-1510915933:25835..26142 | Clytia hemisphaerica | exon |
| TCONS_00072526-exon-scaffold_79-1510915933:20900..21457 | TCONS_00072526-exon-scaffold_79-1510915933:20900..21457 | Clytia hemisphaerica | exon |
| TCONS_00072526-exon-scaffold_79-1510915933:18778..20330 | TCONS_00072526-exon-scaffold_79-1510915933:18778..20330 | Clytia hemisphaerica | exon |
| TCONS_00072526-exon-scaffold_79-1491911889:25835..26142 | TCONS_00072526-exon-scaffold_79-1491911889:25835..26142 | Clytia hemisphaerica | exon |
| TCONS_00072526-exon-scaffold_79-1491911889:20900..21457 | TCONS_00072526-exon-scaffold_79-1491911889:20900..21457 | Clytia hemisphaerica | exon |
| TCONS_00072526-exon-scaffold_79-1491911889:18778..20330 | TCONS_00072526-exon-scaffold_79-1491911889:18778..20330 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_79 | supercontig | scaffold_79:18778..26142 - |
Blast
The following BLAST results are available for this feature:
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