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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072525 ID=TCONS_00072525|Name=TCONS_00072525|organism=Clytia hemisphaerica|type=transcript|length=2543bp
tgaaaaagtaaaaaggtgtaggataaaaaatcaaaaccttcCAATCTACG
AAAATACCTTCAACTCATCAGGAGAGAAAAATTGCGCCCTAAGTAAAATG
AAGAATGGTTTGATCAATCAACGATAACCGACAGCGTTTTTTCGTTACAA
TGGATGTTATCCAATCATTTCTACGCTCAGACAAGCCGATCCAATACATT
CGATATTTGGAAAATGAGGTCGACCCTACATGTCCTGAATTCAAGGAATA
TGCGAAAGTTTTGGTCGAAACTTTTGATCCTGTCTTATATGATAATCTTC
ATGAAGGACGTGCTACGGAAATGGGTCACTTCTTCCTGAAAACTGCCAAT
CCTGAATTATCGCTAGTATTTATAAAGAGAGTGTTATCAGCAGAAAAATG
GTGCTTGGATCAAGATGGTCAAATGACACATGTAAATCGAAAATTTATTG
AACTTTTTGCGGAATTGATCAAGTCTATCCCATGGGATGATATCAAAGAA
ACACTAGACTTTACTCTTGAACACCTTGACTTTTCGCTGATTCCAGGCTG
GTTAGAAGTTTATAAACATACTCAGATCTCTTATATTGCACACAAGGTTA
TCGAATCCAGCTTGCTGACCCCAGACAAAAACCCAGGCCAAAAGTGCGTT
AGTCTTAGTACGATTGATTCTGAGCTATATGGATATCGGAGGGTTTGGAC
ACAACTGATCTATGTTGTTTTTGGTTCGAAGCACCTATCTGAATGCTGGT
TAGAAAAATTATCAGAATGTCGAAACATTACAAATGATATTGATTTGATG
TCATTGTTATTCACAAGAGAGCGACTTCCTGATGAAAATAAAACTCTCAG
ATCTCGCATTTGGAATTATTTCATTGAATGTATCAAATACATAAAGGATC
TGGGGCGAGTGGATCGCCATGGTAGCAGGTATAACAGTGTAGGTCGAAAA
CATGGCTACTCCGTATTAATAAAGGATCAAATTCGACCTTTCATGAAAGA
TTTCAATGAATTTAAAGAggatttttctgttttgttcaAACATCTTCTTT
CCAGTGATAATTCTGTCATCGTCAGCAGAATCTTGATCGCTTTCTCCAAA
GATTGCTTCTCGAAGCCTCAGAGTGAAACTGAAGGTTTCAAGATTATCTT
CAATATGTACATGGATCATTTGTGGAGTGTTAAGTTAAATGATTCGCATG
TTGAAGAGTTAGCAAACATTGCTCAAGCCCTGGTACGTAATAAAGAACAC
AACCCAACCAGCCCGCACAACAAACCCAACCTGGCCAGATTCCACAAACT
ATTAAAAACCTTGGAAAAGCCTTCCTTGCTTTACAAACTAGCATTTCAAc
tgtttcgattttttgaagACGAAGACCTGGATGATTTGGATTTCACGGAT
TCTATTGGTCACATTCTACAGTTGCTGGTTCAATCGTTTGCCAATGGATT
TATCGTTGAAATGAAAGGGTTAGCTTCGTTTATCGTTTTCTTACTCGAGg
agaaaaaattccaacctATTTTGACGGAAATGTTGTCCCACAAGAGAATT
ATTCCCCACTTAAAGGAATGTTCCAAGGACTTGGCATACTTGTTATTGGA
GAAGCCACAGAAAACGGAAAACTTTAAAAAGGTGCTTTCTATTATTTTAA
CTGGTGTTGGTGGGTGGTTTCAGCAGAAAGAATGCGTAGTATATGGTGGT
CCACTGAGCACATCCAACCTGATTCACCACCTCATGAAATTGCTTTCTTC
GGATCATTATTTTCATGACAGTCAAATTTTGCTTTTGGATCAATTTCGGG
TTGAGGGTCATGATAATTTGTTAGACTGCAGAAGAGTAGTGAGTTTAAAA
GGACTGATTCGCCAGTTCAAGGATAATATCAACGTGTTACGAGTTCGTGT
CTTAAATCTAAGATCGTTAAAAGAAAGTGGTGTTCCAAAGCTGTCATGGA
AGCAACCTAGAGCACATCTTCCAGAAGAGCCCGAAATTGAAGAATTCCTA
CGAAGTGAAGAAATAACTTTCGTTTATCCGGCCTTTCAAAATAAAGAGGA
GGCTCGAGAATGGATCAAAAATTATGCCGGTGTTAGAAATACGTACAGTT
TCACAGCTGTTGCTAGACCATTTGCTAATGATGGGTCTTATGAGGTTGTC
TTACAAAAAGGAagggatatttttgaaaaaagtaagaacaaGTTTTTTGa
cttgatggatgaacttgagGGATTGGAAACGAGATTAAAAGCGAGTCACG
TGACATCAGCTCATTCTGTGAATGGataattcaaaaaaaagaatgacCCG
AACTGATTTTGAATGTCTTATATATTGTTTATTTCATTCCAAtttgattt
acttttgttttttccAGTTCTTGagattcttttgtttctttatatgtgta
atacacccctgtgtcacagacccggtggacccccaccccggtggaaaaat
aggccaaaaaatcctccccggtggaaaaaatatcctataatttcaacccc
actgcgaaattgctctatgattttatctccattgaaaactgaa Run BLAST on NCBI protein sequence of TCONS_00072525-protein >TCONS_00072525-protein ID=TCONS_00072525-protein|Name=TCONS_00072525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=709bp
MDVIQSFLRSDKPIQYIRYLENEVDPTCPEFKEYAKVLVETFDPVLYDNL
HEGRATEMGHFFLKTANPELSLVFIKRVLSAEKWCLDQDGQMTHVNRKFI
ELFAELIKSIPWDDIKETLDFTLEHLDFSLIPGWLEVYKHTQISYIAHKV
IESSLLTPDKNPGQKCVSLSTIDSELYGYRRVWTQLIYVVFGSKHLSECW
LEKLSECRNITNDIDLMSLLFTRERLPDENKTLRSRIWNYFIECIKYIKD
LGRVDRHGSRYNSVGRKHGYSVLIKDQIRPFMKDFNEFKEDFSVLFKHLL
SSDNSVIVSRILIAFSKDCFSKPQSETEGFKIIFNMYMDHLWSVKLNDSH
VEELANIAQALVRNKEHNPTSPHNKPNLARFHKLLKTLEKPSLLYKLAFQ
LFRFFEDEDLDDLDFTDSIGHILQLLVQSFANGFIVEMKGLASFIVFLLE
EKKFQPILTEMLSHKRIIPHLKECSKDLAYLLLEKPQKTENFKKVLSIIL
TGVGGWFQQKECVVYGGPLSTSNLIHHLMKLLSSDHYFHDSQILLLDQFR
VEGHDNLLDCRRVVSLKGLIRQFKDNINVLRVRVLNLRSLKESGVPKLSW
KQPRAHLPEEPEIEEFLRSEEITFVYPAFQNKEEAREWIKNYAGVRNTYS
FTAVARPFANDGSYEVVLQKGRDIFEKSKNKFFDLMDELEGLETRLKASH
VTSAHSVNG Run BLAST on NCBI transcript from alignment at scaffold_79:15536..18331- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072525 ID=TCONS_00072525|Name=TCONS_00072525|organism=Clytia hemisphaerica|type=transcript|length=2796bp|location=Sequence derived from alignment at scaffold_79:15536..18331- (Clytia hemisphaerica)
TGAAAAAGTAAAAAGGTGTAGGATAAAAAATCAAAACCTTCCAATCTACG
AAAATACCTTCAACTCATCAGGAGAGAAAAATTGCGCCCTAAGGTAAGGG
AAATACTTTTTAATCTCTTTTTAAATCCTTACATGAATTTTTTTCTGAAC
TAGCATGCAAGACATTAGACATTAAAGACGTGTAGAAAATAAGCAGAAAG
TAATGGAGGAGACAAATTTTAGTTTATACAAAGTGATATTATATCCGTTA
TAGTTGTTGTATTATTACTTAACACCAAAATTACTGCATTAAATGGGTTA
TAAACGACTCCAGTCTGGCAAATATGTTTACTTTCTTATTATTCAGTAAA
ATGAAGAATGGTTTGATCAATCAACGATAACCGACAGCGTTTTTTCGTTA
CAATGGATGTTATCCAATCATTTCTACGCTCAGACAAGCCGATCCAATAC
ATTCGATATTTGGAAAATGAGGTCGACCCTACATGTCCTGAATTCAAGGA
ATATGCGAAAGTTTTGGTCGAAACTTTTGATCCTGTCTTATATGATAATC
TTCATGAAGGACGTGCTACGGAAATGGGTCACTTCTTCCTGAAAACTGCC
AATCCTGAATTATCGCTAGTATTTATAAAGAGAGTGTTATCAGCAGAAAA
ATGGTGCTTGGATCAAGATGGTCAAATGACACATGTAAATCGAAAATTTA
TTGAACTTTTTGCGGAATTGATCAAGTCTATCCCATGGGATGATATCAAA
GAAACACTAGACTTTACTCTTGAACACCTTGACTTTTCGCTGATTCCAGG
CTGGTTAGAAGTTTATAAACATACTCAGATCTCTTATATTGCACACAAGG
TTATCGAATCCAGCTTGCTGACCCCAGACAAAAACCCAGGCCAAAAGTGC
GTTAGTCTTAGTACGATTGATTCTGAGCTATATGGATATCGGAGGGTTTG
GACACAACTGATCTATGTTGTTTTTGGTTCGAAGCACCTATCTGAATGCT
GGTTAGAAAAATTATCAGAATGTCGAAACATTACAAATGATATTGATTTG
ATGTCATTGTTATTCACAAGAGAGCGACTTCCTGATGAAAATAAAACTCT
CAGATCTCGCATTTGGAATTATTTCATTGAATGTATCAAATACATAAAGG
ATCTGGGGCGAGTGGATCGCCATGGTAGCAGGTATAACAGTGTAGGTCGA
AAACATGGCTACTCCGTATTAATAAAGGATCAAATTCGACCTTTCATGAA
AGATTTCAATGAATTTAAAGAGGATTTTTCTGTTTTGTTCAAACATCTTC
TTTCCAGTGATAATTCTGTCATCGTCAGCAGAATCTTGATCGCTTTCTCC
AAAGATTGCTTCTCGAAGCCTCAGAGTGAAACTGAAGGTTTCAAGATTAT
CTTCAATATGTACATGGATCATTTGTGGAGTGTTAAGTTAAATGATTCGC
ATGTTGAAGAGTTAGCAAACATTGCTCAAGCCCTGGTACGTAATAAAGAA
CACAACCCAACCAGCCCGCACAACAAACCCAACCTGGCCAGATTCCACAA
ACTATTAAAAACCTTGGAAAAGCCTTCCTTGCTTTACAAACTAGCATTTC
AACTGTTTCGATTTTTTGAAGACGAAGACCTGGATGATTTGGATTTCACG
GATTCTATTGGTCACATTCTACAGTTGCTGGTTCAATCGTTTGCCAATGG
ATTTATCGTTGAAATGAAAGGGTTAGCTTCGTTTATCGTTTTCTTACTCG
AGGAGAAAAAATTCCAACCTATTTTGACGGAAATGTTGTCCCACAAGAGA
ATTATTCCCCACTTAAAGGAATGTTCCAAGGACTTGGCATACTTGTTATT
GGAGAAGCCACAGAAAACGGAAAACTTTAAAAAGGTGCTTTCTATTATTT
TAACTGGTGTTGGTGGGTGGTTTCAGCAGAAAGAATGCGTAGTATATGGT
GGTCCACTGAGCACATCCAACCTGATTCACCACCTCATGAAATTGCTTTC
TTCGGATCATTATTTTCATGACAGTCAAATTTTGCTTTTGGATCAATTTC
GGGTTGAGGGTCATGATAATTTGTTAGACTGCAGAAGAGTAGTGAGTTTA
AAAGGACTGATTCGCCAGTTCAAGGATAATATCAACGTGTTACGAGTTCG
TGTCTTAAATCTAAGATCGTTAAAAGAAAGTGGTGTTCCAAAGCTGTCAT
GGAAGCAACCTAGAGCACATCTTCCAGAAGAGCCCGAAATTGAAGAATTC
CTACGAAGTGAAGAAATAACTTTCGTTTATCCGGCCTTTCAAAATAAAGA
GGAGGCTCGAGAATGGATCAAAAATTATGCCGGTGTTAGAAATACGTACA
GTTTCACAGCTGTTGCTAGACCATTTGCTAATGATGGGTCTTATGAGGTT
GTCTTACAAAAAGGAAGGGATATTTTTGAAAAAAGTAAGAACAAGTTTTT
TGACTTGATGGATGAACTTGAGGGATTGGAAACGAGATTAAAAGCGAGTC
ACGTGACATCAGCTCATTCTGTGAATGGATAATTCAAAAAAAAGAATGAC
CCGAACTGATTTTGAATGTCTTATATATTGTTTATTTCATTCCAATTTGA
TTTACTTTTGTTTTTTCCAGTTCTTGAGATTCTTTTGTTTCTTTATATGT
GTAATACACCCCTGTGTCACAGACCCGGTGGACCCCCACCCCGGTGGAAA
AATAGGCCAAAAAATCCTCCCCGGTGGAAAAAATATCCTATAATTTCAAC
CCCACTGCGAAATTGCTCTATGATTTTATCTCCATTGAAAACTGAA Coding sequence (CDS) from alignment at scaffold_79:15536..18331- >TCONS_00072525 ID=TCONS_00072525|Name=TCONS_00072525|organism=Clytia hemisphaerica|type=CDS|length=2130bp|location=Sequence derived from alignment at scaffold_79:15536..18331- (Clytia hemisphaerica)
ATGGATGTTATCCAATCATTTCTACGCTCAGACAAGCCGATCCAATACAT
TCGATATTTGGAAAATGAGGTCGACCCTACATGTCCTGAATTCAAGGAAT
ATGCGAAAGTTTTGGTCGAAACTTTTGATCCTGTCTTATATGATAATCTT
CATGAAGGACGTGCTACGGAAATGGGTCACTTCTTCCTGAAAACTGCCAA
TCCTGAATTATCGCTAGTATTTATAAAGAGAGTGTTATCAGCAGAAAAAT
GGTGCTTGGATCAAGATGGTCAAATGACACATGTAAATCGAAAATTTATT
GAACTTTTTGCGGAATTGATCAAGTCTATCCCATGGGATGATATCAAAGA
AACACTAGACTTTACTCTTGAACACCTTGACTTTTCGCTGATTCCAGGCT
GGTTAGAAGTTTATAAACATACTCAGATCTCTTATATTGCACACAAGGTT
ATCGAATCCAGCTTGCTGACCCCAGACAAAAACCCAGGCCAAAAGTGCGT
TAGTCTTAGTACGATTGATTCTGAGCTATATGGATATCGGAGGGTTTGGA
CACAACTGATCTATGTTGTTTTTGGTTCGAAGCACCTATCTGAATGCTGG
TTAGAAAAATTATCAGAATGTCGAAACATTACAAATGATATTGATTTGAT
GTCATTGTTATTCACAAGAGAGCGACTTCCTGATGAAAATAAAACTCTCA
GATCTCGCATTTGGAATTATTTCATTGAATGTATCAAATACATAAAGGAT
CTGGGGCGAGTGGATCGCCATGGTAGCAGGTATAACAGTGTAGGTCGAAA
ACATGGCTACTCCGTATTAATAAAGGATCAAATTCGACCTTTCATGAAAG
ATTTCAATGAATTTAAAGAGGATTTTTCTGTTTTGTTCAAACATCTTCTT
TCCAGTGATAATTCTGTCATCGTCAGCAGAATCTTGATCGCTTTCTCCAA
AGATTGCTTCTCGAAGCCTCAGAGTGAAACTGAAGGTTTCAAGATTATCT
TCAATATGTACATGGATCATTTGTGGAGTGTTAAGTTAAATGATTCGCAT
GTTGAAGAGTTAGCAAACATTGCTCAAGCCCTGGTACGTAATAAAGAACA
CAACCCAACCAGCCCGCACAACAAACCCAACCTGGCCAGATTCCACAAAC
TATTAAAAACCTTGGAAAAGCCTTCCTTGCTTTACAAACTAGCATTTCAA
CTGTTTCGATTTTTTGAAGACGAAGACCTGGATGATTTGGATTTCACGGA
TTCTATTGGTCACATTCTACAGTTGCTGGTTCAATCGTTTGCCAATGGAT
TTATCGTTGAAATGAAAGGGTTAGCTTCGTTTATCGTTTTCTTACTCGAG
GAGAAAAAATTCCAACCTATTTTGACGGAAATGTTGTCCCACAAGAGAAT
TATTCCCCACTTAAAGGAATGTTCCAAGGACTTGGCATACTTGTTATTGG
AGAAGCCACAGAAAACGGAAAACTTTAAAAAGGTGCTTTCTATTATTTTA
ACTGGTGTTGGTGGGTGGTTTCAGCAGAAAGAATGCGTAGTATATGGTGG
TCCACTGAGCACATCCAACCTGATTCACCACCTCATGAAATTGCTTTCTT
CGGATCATTATTTTCATGACAGTCAAATTTTGCTTTTGGATCAATTTCGG
GTTGAGGGTCATGATAATTTGTTAGACTGCAGAAGAGTAGTGAGTTTAAA
AGGACTGATTCGCCAGTTCAAGGATAATATCAACGTGTTACGAGTTCGTG
TCTTAAATCTAAGATCGTTAAAAGAAAGTGGTGTTCCAAAGCTGTCATGG
AAGCAACCTAGAGCACATCTTCCAGAAGAGCCCGAAATTGAAGAATTCCT
ACGAAGTGAAGAAATAACTTTCGTTTATCCGGCCTTTCAAAATAAAGAGG
AGGCTCGAGAATGGATCAAAAATTATGCCGGTGTTAGAAATACGTACAGT
TTCACAGCTGTTGCTAGACCATTTGCTAATGATGGGTCTTATGAGGTTGT
CTTACAAAAAGGAAGGGATATTTTTGAAAAAAGTAAGAACAAGTTTTTTG
ACTTGATGGATGAACTTGAGGGATTGGAAACGAGATTAAAAGCGAGTCAC
GTGACATCAGCTCATTCTGTGAATGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072525-exon-scaffold_79-1575043694:18239..18331 | TCONS_00072525-exon-scaffold_79-1575043694:18239..18331 | Clytia hemisphaerica | exon |
| TCONS_00072525-exon-scaffold_79-1575043694:15536..17985 | TCONS_00072525-exon-scaffold_79-1575043694:15536..17985 | Clytia hemisphaerica | exon |
| TCONS_00072525-exon-scaffold_79-1510915933:18239..18331 | TCONS_00072525-exon-scaffold_79-1510915933:18239..18331 | Clytia hemisphaerica | exon |
| TCONS_00072525-exon-scaffold_79-1510915933:15536..17985 | TCONS_00072525-exon-scaffold_79-1510915933:15536..17985 | Clytia hemisphaerica | exon |
| TCONS_00072525-exon-scaffold_79-1491911889:18239..18331 | TCONS_00072525-exon-scaffold_79-1491911889:18239..18331 | Clytia hemisphaerica | exon |
| TCONS_00072525-exon-scaffold_79-1491911889:15536..17985 | TCONS_00072525-exon-scaffold_79-1491911889:15536..17985 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_79 | supercontig | scaffold_79:15536..18331 - |
Blast
The following BLAST results are available for this feature:
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