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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072524 ID=TCONS_00072524|Name=TCONS_00072524|organism=Clytia hemisphaerica|type=transcript|length=473bp
AAGAAGACGAAGAAGAACAAGATGAAGAAAATATCGAACAACAAAGTGat
gCTTACAGACCAAAAGTGAGAATCACTAAAGTGTTCAAAGGAAAAGGACT
CttcaaaaacaagaaagttAGCTGTGGAAGCTCCCTTGCTAACCTCGGAT
GTAAATCATCAAAGAAATGCATCAGAAGAAAGAGATACTACAAAAAACGA
GTTTGCGTCAGATCTCTCATCACCACAGTTTGCCGACAACGTATCACCGC
AACATGCAAAGTATGCAGCCGATTCCGACTTCGAAAATGTTATCTCTTCG
GAAAGAAATACCTCAGATGCCGAACATTCAAGAGAGTCTACACCAGATGC
AGAAAAACCTCAAGCTCGAAAATCCGAACCAAGACCACTCGCAAAGTCGT
CAATCACCCATACAAGAAATACTAAATATCAAACGCATACTGGACACGCT
TTTAGAAAAGAGCGCCATCTTTT Run BLAST on NCBI protein sequence of TCONS_00072524-protein >TCONS_00072524-protein ID=TCONS_00072524-protein|Name=TCONS_00072524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
EDEEEQDEENIEQQSDAYRPKVRITKVFKGKGLFKNKKVSCGSSLANLGC
KSSKKCIRRKRYYKKRVCVRSLITTVCRQRITATCKVCSRFRLRKCYLFG
KKYLRCRTFKRVYTRCRKTSSSKIRTKTTRKVVNHPYKKY Run BLAST on NCBI transcript from alignment at scaffold_79:45440..50407+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072524 ID=TCONS_00072524|Name=TCONS_00072524|organism=Clytia hemisphaerica|type=transcript|length=4968bp|location=Sequence derived from alignment at scaffold_79:45440..50407+ (Clytia hemisphaerica)
AAGAAGACGAAGAAGAACAAGATGAAGAAAATATCGAACAACAAAGTGGT
ACGTATTCAACAGAAATGCTAAATGTGAAATTCTCTCTCGAAAGAAGCGT
TGCAATCACGGATGAATATCTAGAATCTAAGAATCTNTGCAAGAAATAAC
CGatcgaaaattttctttatattcTAGGCGAAGAAGAGGAGGCAAAAGCC
TTGGATGAAGTCGAACAAGAAGACGCTCCAGAAGCCTCCCCACAACAAGA
AGACGAGCCAATGACCAGTGACGAAGAAGAGAGTGACGAAGAAACAGATG
ACGAAGAAGAGAGTGACGAAGAGGGAGAGGAGACTCATGAAGAAGAAGAG
CAGGATGAACCACAAGAACAAGAAGACGAAGAAGAACAAGATGAAGAAAA
TGTCGAAGAACAAAGTGGTACGTATTCAACAGAAATGCTAAATGTGAAAT
TCTCTCTCGAAAGAAGCGTTGCAATCACGGATGAATATCTAGAATCTGAG
AATCTAAAAATCAAGCTAAAGACATTGTTTCTTTGATCAATTATGAGAAA
ATTGATTCCAAAGGAGATGACATCATTCACAATCTTTCCTTCCTataact
ttttcttctttttttcagatgCTTACAGACCAAAAGTGAGAATCACTAAA
GTGTTCAAAGGAAAAGGACTCttcaaaaacaagaaagttAGCTGTGCAAG
CTCCCTTGTTAACCTCGGATGTAAATCATCAAAGAAATGCATCAGAAGAA
GGAGATACTACAAAAAACGAGTTTGCGTCAGATCTCTCATCACCACAGTT
TGCCGACAACGTATCACCGTAACATGCAAAGTATGCAGCCGATTCCGACT
CCGAAAATGTTATCTCTTCGGAAAGAAATACCTCAGATGCCGAACATCCA
AGAGAGTCTACAACAAATGCAGAAAAACCTCCAGCTCGAAAATCCAAACC
AAGACCACTCGCAAAGTCGTCAAACACCCATACAAGAAATACTAAATATC
AAACGCATGCTGGACACGCCTTTAGAAAAGAGCACCATCTTTGAGGggtg
attttcattttattaattaggctttttatgaaactttttctgtttttcaa
ataaacattgcaaatcaAAAATAAACTACTGATTCTCTTTGTAATACTAA
TCAGCATTTAATTGAAACCATCCAATGTACTGATAGAATATACACTGTTG
ACTTTTTGCAAGCTCGCTCCGTAACGTGCCCAAGATTATGACACTCAGAT
GAGGTAGTAGAGCTTTGAAAGGTCTTTACACAGACATCAAAACATTTACA
AAGctacagtaaaacctccaattaacggtcactctaaaaggcggacacct
cttaTTAGCCGACAGTGCTTTCCCCCCGGTAATTTCCTAAtcaaatcctt
ataaaaaagttttcaaaaggcGAACACTCAATTAGTGGACACTAACCCTA
TTGCAAGATGgcgtccgctaattggaggttccactgtacaccttttttct
aaaattattctCAAATGTTTAATTATACCGGAGCAGACACAAAAGGGCCT
GTCTGTCGATCAAAAAAAAGAATCTTGATTCTAGTTCTACCTCAAACACT
TTTAATGGTTTTAAATCGATTCTTCACAGATTTTAAACACCTTTGTATCT
CTCCCTTTTTCCACGAACAATTTCTTGGGGTTTTCTTGAGTCCTTCTTCA
TAAATGAAAGGGCACTCTGTCAACAGTGACTAAACTTAAAGCCTGCTATA
CTAGGGTCAAATTGCATATGTTTTAATAATAAGATAAAGAAATCACGGAC
GAAAAGTTTCGAATGCCTTCGTTAAAGGTTCTTTAGCACTTTGGACAAGT
TCCTTTTTCGATAAACTCGACGTACAGAATTTAGCGTTAAAGACAGGTGA
AAAGAACTTCAATAAAATGGTCATTGCCATTAATGAACCAAAGGAAATCC
ACTATGGACATTGTTGTGAACTGCACTAAGGAATGACTCCCTGCTATAAT
AAACGAAAGATTAATTGTTTTTGGTAGATACTGACTCTATGAATGCCTTT
TTTCGTCGAAAATAAGGCCCTTAAAGATGATATCTCACTCTTCGAaattc
taagattttttaattagattatTCCGACCGACAGGGTGGTTGGCCTAACA
TAAACAATAGTGAACATGCCATGGTGTCGCATTATTTTGCATTTAGTTAG
CATCGCGAAAAAGTGTCAATGAAAAAGATGAACTTCATATTGCAAAAATC
AACAGTTGAGAAAATTGGTTCCGAGCTTGAAAAGACCGAAACACGGTGGT
CTCTGTGTCAAAATGTCCCTAAAAACTAAAGTACATGTGTACACAAATAA
CCCTTCTCCAAACTAACCTTCTCTAAACAACTCTTTTGGTACTCGTGTAT
GTCTGAGAATTTAATAACAACCCCTCCGAATACCATACCTCTCAAAAGTT
GCATAACAACCTAATCCAATTAGGCAAAAGGCTGTTATCAAACTCAAACT
TATAAAGGGCTAGAGAGaggtcaatttaaaaaaaagaagacaacaTGGCA
GTATATCAAAAACCCTAAAATTCTATACAGTAAGTAGTATTGATTGACAG
GAGATAAATGAAAAACTTAAACCATTGAAAACTGTCCACGGGTAACAAGA
GAGATGACTATCAACTTCCGCCTCGTTTATATGCAGAGTTTGACGAAGGC
AATTAAAAAAGCGGTCTCGTTATAAAACCAATAAATTCTAGCattgtttt
ttaagaaattgcaAGTCATCCTGAAAAAAGAGTGCGAGGCTCGGTAACAA
TGTTATCTTAACAAGGggaaagtttgaaaagaaagactAATCAAGAAAGC
ATGTCAAACTCGGATGGGGGTACTAGGCTAGAAATATTTGCCAAAATTCT
GGGCGATCAATCTCAAAATTggatcaacattttcaaaaaacgtgaccctt
tgagagggaaattttcaattatagtgattttgggaccctttaaGAGACTA
ACCTATGAATGTGTATCCCTTTAATGGACTTTTCAGgtatgaaaaaaact
tcattttacTTGCACGTGAATTTCGTAAAAATAATTGACTTGACTGCATA
CTTAGCCCACTTGTTGACCTTCTCACGCCATCTCAGTCACGTGCGTGGCT
GCCGTTGCAATGAGAAGCTAGTGTCTTCCCTAGTGATATCTTTCCATCGT
TTCGCCGGTCTACCTCTCCTCCTTATGCCCTAGAACtcacttttcaaaca
ttttcttaaaaggttctCCTCTGGGAATCTCACAACATGGCCGAACTATG
ACAAGCACCTTTTCTTAATGACGTGGGCAGTCgttgtttgaagttttttt
ctATTCAGAAATTGaatcaatgataaaaaattGACACACATCCTCAAATT
TATGAGCAAAGCTTATCAACCTGATAATGGTTAATGAGAAATAGCGATAA
CAGCAAAATGGAGGATTCATTGATTCAGCCTTAATCTGAGAAAAGGCTgc
caaaagttttttaaaagtctTCGTGGCACACccttttcaaagcaaaaaaa
gcTGAACGTGTCAAGTTTGATTGATTAATAATATGTAAAACCATCATTAT
CATCATTCGTGCTTCAAAAAAATACTGCATGTGAAGCAAATTAATTAAGT
AAAACCAAAACGACCATAATTAATAGCCGATAAAGTGTGGCTGAAAGTTT
CGGAGTAATTATCTTCCTCTCTCACTTCCTGGTCTGCAACAGTATAAAAG
AGCtgcaacatttaaaaaaagacattctcAAATTGAACTCGAGgataaaa
caacaacaacaaacagcaAAATGAAGATTTGGAAAGCTTTGTTACTCGTC
TCCTTCTTGGTCTACGCAGTTCATTGTAAGTTCAATTATGCTCAACACCT
TTTCTTATTCATAAGAGTCttataattttcattcttttgcTGGACTTCAG
ATGCTCAACATCTTTTCTACACCTTTATTCATCATGAGTCTTTTAATTTG
GGAGTCTTGTAGACTTGCTTGCCATCAGCTTTTGCTGGACTTCAGAACAG
AAAGAAGCAAAAAGATTGCCAGAGAATAAACAAtccacttttttctttta
attctaGGCGAAGAAGAGGAGACAAAAGCCTTGGATGAAGTCGAACAAGA
AGACGCTCCAGAAGCCTCCCCACACCAACAAGAAGACGAGCCAATGACCA
GTGACGAAGAAACGAATGACGAAGAAATGAACGACGAAGAAGAGAGTGAC
GAAGAGGGAGAGGAGACTCATGAAGAAGAAGAGCAGGATGAACCACAAGA
GCAAGAAGACGAAGAAGAACAAGATGAAGAAAATATCGAACAACAAAGTG
GTACGTATTCAACAGAAATGCTAAATGTGAAATTCTCTCTCGAAAGAAGC
GTTGCAATCACGGATGAATATCTAGAATCTAAGAATCAAGCTAAAGACAT
TGTTTCTTTGAATAATTATGAGAAAATTGATTCCAAAGGAGATGACATCA
TTCACAATCTTTCCTTCCTataactttttcttctttttttcagatgCTTA
CAGACCAAAAGTGAGAATCACTAAAGTGTTCAAAGGAAAAGGACTCttca
aaaacaagaaagttAGCTGTGGAAGCTCCCTTGCTAACCTCGGATGTAAA
TCATCAAAGAAATGCATCAGAAGAAAGAGATACTACAAAAAACGAGTTTG
CGTCAGATCTCTCATCACCACAGTTTGCCGACAACGTATCACCGCAACAT
GCAAAGTATGCAGCCGATTCCGACTTCGAAAATGTTATCTCTTCGGAAAG
AAATACCTCAGATGCCGAACATTCAAGAGAGTCTACACCAGATGCAGAAA
AACCTCAAGCTCGAAAATCCGAACCAAGACCACTCGCAAAGTCGTCAATC
ACCCATACAAGAAATACTAAATATCAAACGCATACTGGACACGCTTTTAG
AAAAGAGCGCCATCTTTT Coding sequence (CDS) from alignment at scaffold_79:45440..50407+ >TCONS_00072524 ID=TCONS_00072524|Name=TCONS_00072524|organism=Clytia hemisphaerica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_79:45440..50407+ (Clytia hemisphaerica)
GAAGACGAAGAAGAACAAGATGAAGAAAATATCGAACAACAAAGTGatgC
TTACAGACCAAAAGTGAGAATCACTAAAGTGTTCAAAGGAAAAGGACTCt
tcaaaaacaagaaagttAGCTGTGGAAGCTCCCTTGCTAACCTCGGATGT
AAATCATCAAAGAAATGCATCAGAAGAAAGAGATACTACAAAAAACGAGT
TTGCGTCAGATCTCTCATCACCACAGTTTGCCGACAACGTATCACCGCAA
CATGCAAAGTATGCAGCCGATTCCGACTTCGAAAATGTTATCTCTTCGGA
AAGAAATACCTCAGATGCCGAACATTCAAGAGAGTCTACACCAGATGCAG
AAAAACCTCAAGCTCGAAAATCCGAACCAAGACCACTCGCAAAGTCGTCA
ATCACCCATACAAGAAATACTAAGAAGACGAAGAAGAACAAGATGAAGAA
AATATCGAACAACAAAGTGatgCTTACAGACCAAAAGTGAGAATCACTAA
AGTGTTCAAAGGAAAAGGACTCttcaaaaacaagaaagttAGCTGTGGAA
GCTCCCTTGCTAACCTCGGATGTAAATCATCAAAGAAATGCATCAGAAGA
AAGAGATACTACAAAAAACGAGTTTGCGTCAGATCTCTCATCACCACAGT
TTGCCGACAACGTATCACCGCAACATGCAAAGTATGCAGCCGATTCCGAC
TTCGAAAATGTTATCTCTTCGGAAAGAAATACCTCAGATGCCGAACATTC
AAGAGAGTCTACACCAGATGCAGAAAAACCTCAAGCTCGAAAATCCGAAC
CAAGACCACTCGCAAAGTCGTCAATCACCCATACAAGAAATACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072524-exon-scaffold_79-1491911889:45440..45487 | TCONS_00072524-exon-scaffold_79-1491911889:45440..45487 | Clytia hemisphaerica | exon |
| TCONS_00072524-exon-scaffold_79-1510915933:45440..45487 | TCONS_00072524-exon-scaffold_79-1510915933:45440..45487 | Clytia hemisphaerica | exon |
| TCONS_00072524-exon-scaffold_79-1575043694:45440..45487 | TCONS_00072524-exon-scaffold_79-1575043694:45440..45487 | Clytia hemisphaerica | exon |
| TCONS_00072524-exon-scaffold_79-1491911889:49983..50407 | TCONS_00072524-exon-scaffold_79-1491911889:49983..50407 | Clytia hemisphaerica | exon |
| TCONS_00072524-exon-scaffold_79-1510915933:49983..50407 | TCONS_00072524-exon-scaffold_79-1510915933:49983..50407 | Clytia hemisphaerica | exon |
| TCONS_00072524-exon-scaffold_79-1575043694:49983..50407 | TCONS_00072524-exon-scaffold_79-1575043694:49983..50407 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_79 | supercontig | scaffold_79:45440..50407 + |
Blast
The following BLAST results are available for this feature:
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