TCONS_00072522 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072522
Unique NameTCONS_00072522
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072522 ID=TCONS_00072522|Name=TCONS_00072522|organism=Clytia hemisphaerica|type=transcript|length=649bp
GTAATGTTGGTTTAATCGATTGCACAGTGTTGGGTCAAGCTATTTCGACT
TTTCCATCCACTTATAAATTTCCTGATGGCGTCAAGgcTGTTCTTCGTGA
AAATGAAACTGTCTTTGGGATATACAACACTAACGATCATTGGAATCTAT
TGCTTATATTTCCAAAACAAAAGCAACTTTGGTTGGCTAACCCACTTGGT
GAAGGAACAATTGAACAACAAAATATTGTCAGGACATGGGAATCGATAAT
GGCTTTGAACTTCAAAGAATCCACTCCTTGGACAATATATTCGCAGCAAC
ATGCAATTCAAGAGGATGCTGTCTCGTGTGGTGTTTTCTGTCTGAAGTTT
TTAGAATCATTCCTCCAGAGTAGGACATTACCGTCAAATTTTGAGTTAAA
AGACGTATTTGCGTACCGTCAAAGAATTGGGTCGCAACTTCTCCGCAGTG
GAGGTTATGGAACTTGGACCAAACGGATATGTAGGATATGTGGTAGAAAT
GATCCACCAAGATGTAATTTTTCAAGTGTTCCCAAACGCACGAAATGGAT
TGAATGTGAAAACTGCAAGCCAAAAAGATGGTTCCACCTCTTATGTCTTG
GATCGGACGAATCATCCAAGGATATGTCCTTCGATTGTGATAAGGTGAT
Run BLAST on NCBI

protein sequence of TCONS_00072522-protein

>TCONS_00072522-protein ID=TCONS_00072522-protein|Name=TCONS_00072522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
NVGLIDCTVLGQAISTFPSTYKFPDGVKAVLRENETVFGIYNTNDHWNLL
LIFPKQKQLWLANPLGEGTIEQQNIVRTWESIMALNFKESTPWTIYSQQH
AIQEDAVSCGVFCLKFLESFLQSRTLPSNFELKDVFAYRQRIGSQLLRSG
GYGTWTKRICRICGRNDPPRCNFSSVPKRTKWIECENCKPKRWFHLLCLG
SDESSKDMSFDCDKV
Run BLAST on NCBI

transcript from alignment at scaffold_79:22..2866+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072522 ID=TCONS_00072522|Name=TCONS_00072522|organism=Clytia hemisphaerica|type=transcript|length=2845bp|location=Sequence derived from alignment at scaffold_79:22..2866+ (Clytia hemisphaerica)
GTAATGTTGGTTTAATCGATTGCACAGTGTTGGGTCAAGCTATTTCGACT TTTCCATCCACTTATAAATTTCCTGATGGCGTCAAGGTACGTTTGACTCT TGAAAATAATTCATCATCCAAGGCAACTTTTAGCCCAAGAGCTATAGAGT AGTCCAGTACCTAGCTAATCTGGAATTTATAAATTCAGTGTAGTATTTTA ATAAAGGAGATGTATCAGATTCCCTTTAATCTTctcaatgaatttttttt ataaggaatgtGTCAAAAGAATGCAAAAGACATATTCTAATAagtaattt tcatcaaaattttcaggcTGTTCTTCGTGAAAATGAAACTGTCTTTGGGA TATACAACACTAACGATCATTGGAATCTATTGGtaagaatgaaatttttc attctATGGTGATGAAATGCTTGAGTTTAAAAATGCTAACAATTTGTTTc caataaaaaaatgatttcgattttcgatttttgataatgaaatgtttttg aaaatctctATCTTTCTTTATCTTTGTAGCTTATATTTCCAAAACAAAAG CAACTTTGGTTGGCTAACCCACTTGGTGAAGGAACAATTGAACAACAAAA TATTGTCAGGACATGGGAGTaggttttgtttataaatattaGACAGTTTC TCAGTTAGTATTTTATGGTTTGTGGTATTTAACAAGCTGTTCTGTCTTTC GTAAGAGACTTTCTCTGATTATTGCCTACCTAAAAATCTTAAACATGCCT TTTTTCCTGTAAATATCATTTGCAAGTTCACTATCTTGTTACATTGTTTA TAGGCCTCAAAATGGAGAACGTGTTGACCATGAGAGTTGAGTTATGTTAA CTTAGTCTGTTTCATTCTAAGAGAGATGGTGTATTCACTGAGCTTTATAA AAATCCGTGCTGAAAATTTGTACCCAGCAAGCAAGTACTACTAAGCACAA GAGCGtttgaagattgaaaatttctcattttttcctAGTGAGTAATAAAG AATGACTTTTTTTTAGATCGATAATGGCTTTGAACTTCAAAGAATCCACT CCTTGGACAATATATTCGCAGCAACATGCAATTCAAGAGGATGCTGTCTC GTGTGGTGTTTTCTGTCTGAAGGTAATTTGCTTGAGTGTTTGCATTTTTG TGCAAAGCCACCTAGCCAGCTCGACCTGGTTAAACAAATGTCCATTTGTC GACAACACCACCCCTTTTTTATCTGAGATAGTACAACTTACCATTTGGTA TACTTTAATTAAGTTGTAGTTAGTGGaccaaaattattttcaaaatgtct aGATGTATAGTTTCTTCTTCAAAATTATCAAGTTATCATCAAGCTAACTA AAAtatgtctcaaaagtatgtgaaCATCTTAGTTTTATGATTTATCAGCA CCTATTCATGCTATATTAGAAAGTTATAATACACCGTTGgaaacatattt tcaaaaagactaatctaaagaaaatttttttttgaaaaattgaaagatga aaaagaataaaatcaaGATTCTTCGTTTAAATTATTCTCCATATTCTATT ATTATtctgaaaatatctttccaacggtgtataactttcTAGCATAGCAT AAATGGGTCCcgagaaaatgctcaaaaaactAAAGTatccacatactttt gagacagacttttttTCAATACACCACCTTTCTTGCTTGAGTCCTCATAG GGACTTTCTTCATGATAATCTCGAAAGggcggggggtactagggttggcg gttgaggggtatgtgcggacgagACCTCCAAAAACCAAACCTTAGAGTCC AAATTTTAGAGAAGAAGTCACCCTTAGATAGAATTTTACTATTTACtctc gaaattaaaaaaaaattaaaaaaatgttgaatttcCCAACCCTTATagga attgatttgaaatttctgatttttgtaacccttagagaggtCAGcgcata cccagcacccatttttgcctaagtacccccactCCGTGATGTTAATTTAT CTTTCCAGTTTTTAGAATCATTCCTCCAGAGTAGGACATTACCGTCAAAT TTTGAGTTAAAAGACGTATTTGCGTACCGTCAAAGAATTGGGTCGCAACT TCTCCGCAGTGGAGGTATGATTTTAGGCTCTTTTTTTCCAAACAGTGCTT CTATCCACCATTTTCAAGCTAACTTATATTCACACACAGAGTtttattaa aactttttattaaaaCTCTGAAGGGTCTTTTAACCGTTTTTTGTTTATCG GGTACACTGACATTACATGATATGGGTCAGCTCGTCCACTAACACAAAAA TGTTTTAGAGGGAAGGTGTTACGTTTTTCATTActgttgttttgatgttt cttacCTAGTTTGTTCGGTCGATTCTAATAGGTTATGGAACTTGGACCAA ACGGATATGTAGGATATGTGGTAGAAATGATCCACCAAGATGTAATTTTT CAAGTGTTCCCAAACGCACGAAATGGGTATGTTTATAACTTTTCACATTT CTGTAACAGCTCGAACATCCATTATCCACGACATTCTTCATtgttcaaaa aaatgtcagataTCTTTTAAGGGAGGTCGAAGTCAAAAAATATCTCTTAG ATCGATTCATCTATCAGTTTGAAATTCCGGCTCATACCAAATGGTATGGG TGTTATAACTCCTTTTTAAAATACACTGTCGTGTGTGATTTAAATCTTCT AGATGAGATATCTAAGGtgattatttttaaacaatcacTTTCAGATTGAA TGTGAAAACTGCAAGCCAAAAAGATGGTTCCACCTCTTATGTCTTGGATC GGACGAATCATCCAAGGATATGTCCTTCGATTGTGATAAGGTGAT

Coding sequence (CDS) from alignment at scaffold_79:22..2866+

>TCONS_00072522 ID=TCONS_00072522|Name=TCONS_00072522|organism=Clytia hemisphaerica|type=CDS|length=4515bp|location=Sequence derived from alignment at scaffold_79:22..2866+ (Clytia hemisphaerica)
AATGTTGGTTTAATCGATTGCACAGTGTTGGGTCAAGCTATTTCGACTTT
TCCATCCACTTATAAATTTCCTGATGGCGTCAAGgcTGTTCTTCGTGAAA
ATGAAACTGTCTTTGGGATATACAACACTAACGATCATTGGAATCTATTG
CTTATATTTCCAAAACAAAAGCAACTTTGGTTGGCTAACCCACTTGGTGA
AGGAACAATTGAACAACAAAATATTGTCAGGACATGGGAATCGATAATGG
CTTTGAACTTCAAAGAATCCACTCCTTGGACAATATATTCGCAGCAACAT
GCAATTCAAGAGGATGCTGTCTCGTGTGGTGTTTTCTGTCTGAAGTTTTT
AGAATCATTCCTCCAGAGTAGGACATTACCGTCAAATTTTGAGTTAAAAG
ACGTATTTGCGTACCGTCAAAGAATTGGGTCGCAACTTCTCCGCAGTGGA
GGTTATGGAACTTGGACCAAACGGATATGTAGGATATGTGGTAGAAATGA
TCCACCAAGATGTAATTTTTCAAGTGTTCCCAAACGCACGAAATGGATTG
AATGTGAAAACTGCAAGCCAAAAAGATGGTTCCACCTCTTATGTCTTGGA
TCGGACGAATCATCCAAGGATATGTCCTTCGATTGTGATAAGGTGAATGT
TGGTTTAATCGATTGCACAGTGTTGGGTCAAGCTATTTCGACTTTTCCAT
CCACTTATAAATTTCCTGATGGCGTCAAGgcTGTTCTTCGTGAAAATGAA
ACTGTCTTTGGGATATACAACACTAACGATCATTGGAATCTATTGCTTAT
ATTTCCAAAACAAAAGCAACTTTGGTTGGCTAACCCACTTGGTGAAGGAA
CAATTGAACAACAAAATATTGTCAGGACATGGGAATCGATAATGGCTTTG
AACTTCAAAGAATCCACTCCTTGGACAATATATTCGCAGCAACATGCAAT
TCAAGAGGATGCTGTCTCGTGTGGTGTTTTCTGTCTGAAGTTTTTAGAAT
CATTCCTCCAGAGTAGGACATTACCGTCAAATTTTGAGTTAAAAGACGTA
TTTGCGTACCGTCAAAGAATTGGGTCGCAACTTCTCCGCAGTGGAGGTTA
TGGAACTTGGACCAAACGGATATGTAGGATATGTGGTAGAAATGATCCAC
CAAGATGTAATTTTTCAAGTGTTCCCAAACGCACGAAATGGATTGAATGT
GAAAACTGCAAGCCAAAAAGATGGTTCCACCTCTTATGTCTTGGATCGGA
CGAATCATCCAAGGATATGTCCTTCGATTGTGATAAGGTGAATGTTGGTT
TAATCGATTGCACAGTGTTGGGTCAAGCTATTTCGACTTTTCCATCCACT
TATAAATTTCCTGATGGCGTCAAGgcTGTTCTTCGTGAAAATGAAACTGT
CTTTGGGATATACAACACTAACGATCATTGGAATCTATTGCTTATATTTC
CAAAACAAAAGCAACTTTGGTTGGCTAACCCACTTGGTGAAGGAACAATT
GAACAACAAAATATTGTCAGGACATGGGAATCGATAATGGCTTTGAACTT
CAAAGAATCCACTCCTTGGACAATATATTCGCAGCAACATGCAATTCAAG
AGGATGCTGTCTCGTGTGGTGTTTTCTGTCTGAAGTTTTTAGAATCATTC
CTCCAGAGTAGGACATTACCGTCAAATTTTGAGTTAAAAGACGTATTTGC
GTACCGTCAAAGAATTGGGTCGCAACTTCTCCGCAGTGGAGGTTATGGAA
CTTGGACCAAACGGATATGTAGGATATGTGGTAGAAATGATCCACCAAGA
TGTAATTTTTCAAGTGTTCCCAAACGCACGAAATGGATTGAATGTGAAAA
CTGCAAGCCAAAAAGATGGTTCCACCTCTTATGTCTTGGATCGGACGAAT
CATCCAAGGATATGTCCTTCGATTGTGATAAGGTGAATGTTGGTTTAATC
GATTGCACAGTGTTGGGTCAAGCTATTTCGACTTTTCCATCCACTTATAA
ATTTCCTGATGGCGTCAAGgcTGTTCTTCGTGAAAATGAAACTGTCTTTG
GGATATACAACACTAACGATCATTGGAATCTATTGCTTATATTTCCAAAA
CAAAAGCAACTTTGGTTGGCTAACCCACTTGGTGAAGGAACAATTGAACA
ACAAAATATTGTCAGGACATGGGAATCGATAATGGCTTTGAACTTCAAAG
AATCCACTCCTTGGACAATATATTCGCAGCAACATGCAATTCAAGAGGAT
GCTGTCTCGTGTGGTGTTTTCTGTCTGAAGTTTTTAGAATCATTCCTCCA
GAGTAGGACATTACCGTCAAATTTTGAGTTAAAAGACGTATTTGCGTACC
GTCAAAGAATTGGGTCGCAACTTCTCCGCAGTGGAGGTTATGGAACTTGG
ACCAAACGGATATGTAGGATATGTGGTAGAAATGATCCACCAAGATGTAA
TTTTTCAAGTGTTCCCAAACGCACGAAATGGATTGAATGTGAAAACTGCA
AGCCAAAAAGATGGTTCCACCTCTTATGTCTTGGATCGGACGAATCATCC
AAGGATATGTCCTTCGATTGTGATAAGGTGAATGTTGGTTTAATCGATTG
CACAGTGTTGGGTCAAGCTATTTCGACTTTTCCATCCACTTATAAATTTC
CTGATGGCGTCAAGgcTGTTCTTCGTGAAAATGAAACTGTCTTTGGGATA
TACAACACTAACGATCATTGGAATCTATTGCTTATATTTCCAAAACAAAA
GCAACTTTGGTTGGCTAACCCACTTGGTGAAGGAACAATTGAACAACAAA
ATATTGTCAGGACATGGGAATCGATAATGGCTTTGAACTTCAAAGAATCC
ACTCCTTGGACAATATATTCGCAGCAACATGCAATTCAAGAGGATGCTGT
CTCGTGTGGTGTTTTCTGTCTGAAGTTTTTAGAATCATTCCTCCAGAGTA
GGACATTACCGTCAAATTTTGAGTTAAAAGACGTATTTGCGTACCGTCAA
AGAATTGGGTCGCAACTTCTCCGCAGTGGAGGTTATGGAACTTGGACCAA
ACGGATATGTAGGATATGTGGTAGAAATGATCCACCAAGATGTAATTTTT
CAAGTGTTCCCAAACGCACGAAATGGATTGAATGTGAAAACTGCAAGCCA
AAAAGATGGTTCCACCTCTTATGTCTTGGATCGGACGAATCATCCAAGGA
TATGTCCTTCGATTGTGATAAGGTGAATGTTGGTTTAATCGATTGCACAG
TGTTGGGTCAAGCTATTTCGACTTTTCCATCCACTTATAAATTTCCTGAT
GGCGTCAAGgcTGTTCTTCGTGAAAATGAAACTGTCTTTGGGATATACAA
CACTAACGATCATTGGAATCTATTGCTTATATTTCCAAAACAAAAGCAAC
TTTGGTTGGCTAACCCACTTGGTGAAGGAACAATTGAACAACAAAATATT
GTCAGGACATGGGAATCGATAATGGCTTTGAACTTCAAAGAATCCACTCC
TTGGACAATATATTCGCAGCAACATGCAATTCAAGAGGATGCTGTCTCGT
GTGGTGTTTTCTGTCTGAAGTTTTTAGAATCATTCCTCCAGAGTAGGACA
TTACCGTCAAATTTTGAGTTAAAAGACGTATTTGCGTACCGTCAAAGAAT
TGGGTCGCAACTTCTCCGCAGTGGAGGTTATGGAACTTGGACCAAACGGA
TATGTAGGATATGTGGTAGAAATGATCCACCAAGATGTAATTTTTCAAGT
GTTCCCAAACGCACGAAATGGATTGAATGTGAAAACTGCAAGCCAAAAAG
ATGGTTCCACCTCTTATGTCTTGGATCGGACGAATCATCCAAGGATATGT
CCTTCGATTGTGATAAGGTGAATGTTGGTTTAATCGATTGCACAGTGTTG
GGTCAAGCTATTTCGACTTTTCCATCCACTTATAAATTTCCTGATGGCGT
CAAGgcTGTTCTTCGTGAAAATGAAACTGTCTTTGGGATATACAACACTA
ACGATCATTGGAATCTATTGCTTATATTTCCAAAACAAAAGCAACTTTGG
TTGGCTAACCCACTTGGTGAAGGAACAATTGAACAACAAAATATTGTCAG
GACATGGGAATCGATAATGGCTTTGAACTTCAAAGAATCCACTCCTTGGA
CAATATATTCGCAGCAACATGCAATTCAAGAGGATGCTGTCTCGTGTGGT
GTTTTCTGTCTGAAGTTTTTAGAATCATTCCTCCAGAGTAGGACATTACC
GTCAAATTTTGAGTTAAAAGACGTATTTGCGTACCGTCAAAGAATTGGGT
CGCAACTTCTCCGCAGTGGAGGTTATGGAACTTGGACCAAACGGATATGT
AGGATATGTGGTAGAAATGATCCACCAAGATGTAATTTTTCAAGTGTTCC
CAAACGCACGAAATGGATTGAATGTGAAAACTGCAAGCCAAAAAGATGGT
TCCACCTCTTATGTCTTGGATCGGACGAATCATCCAAGGATATGTCCTTC
GATTGTGATAAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045004XLOC_045004Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072522-proteinTCONS_00072522-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072522-exon-scaffold_79-1491911889:22..107TCONS_00072522-exon-scaffold_79-1491911889:22..107Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1510915933:22..107TCONS_00072522-exon-scaffold_79-1510915933:22..107Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1575043694:22..107TCONS_00072522-exon-scaffold_79-1575043694:22..107Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1491911889:338..403TCONS_00072522-exon-scaffold_79-1491911889:338..403Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1510915933:338..403TCONS_00072522-exon-scaffold_79-1510915933:338..403Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1575043694:338..403TCONS_00072522-exon-scaffold_79-1575043694:338..403Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1491911889:551..639TCONS_00072522-exon-scaffold_79-1491911889:551..639Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1510915933:551..639TCONS_00072522-exon-scaffold_79-1510915933:551..639Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1575043694:551..639TCONS_00072522-exon-scaffold_79-1575043694:551..639Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1491911889:1038..1143TCONS_00072522-exon-scaffold_79-1491911889:1038..1143Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1510915933:1038..1143TCONS_00072522-exon-scaffold_79-1510915933:1038..1143Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1575043694:1038..1143TCONS_00072522-exon-scaffold_79-1575043694:1038..1143Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1491911889:2030..2135TCONS_00072522-exon-scaffold_79-1491911889:2030..2135Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1510915933:2030..2135TCONS_00072522-exon-scaffold_79-1510915933:2030..2135Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1575043694:2030..2135TCONS_00072522-exon-scaffold_79-1575043694:2030..2135Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1491911889:2403..2497TCONS_00072522-exon-scaffold_79-1491911889:2403..2497Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1510915933:2403..2497TCONS_00072522-exon-scaffold_79-1510915933:2403..2497Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1575043694:2403..2497TCONS_00072522-exon-scaffold_79-1575043694:2403..2497Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1491911889:2766..2866TCONS_00072522-exon-scaffold_79-1491911889:2766..2866Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1510915933:2766..2866TCONS_00072522-exon-scaffold_79-1510915933:2766..2866Clytia hemisphaericaexon
TCONS_00072522-exon-scaffold_79-1575043694:2766..2866TCONS_00072522-exon-scaffold_79-1575043694:2766..2866Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_79supercontigscaffold_79:22..2866 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.631094 0.63423 0 0.0893177 1.02274 0.585736 1.04001 1.06347 0.427848 0.21493 0.309705 0.660561 0.502538 1.2505 1.06633 0.606157 1.99231 1.50105 1.17979 0.325205 0.437378 0.53293 0.383712 0.380401 0.810042 0.764938 0.36057 0.230954 0.0894944 0.0911806
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003653Peptidase_C48_C
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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